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Volumn 39, Issue SUPPL. 2, 2011, Pages

R3D-BLAST: A search tool for similar RNA 3D substructures

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE; RNA;

EID: 79960015080     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr379     Document Type: Article
Times cited : (12)

References (12)
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  • 4
    • 77951796655 scopus 로고    scopus 로고
    • RNA FRABASE 2.0: An advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures
    • Popenda, M., Szachniuk, M., Blazewicz, M., Wasik, S., Burke, E.K., Blazewicz, J. and Adamiak, R.W. (2010) RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures. BMC Bioinformatics, 11, 231.
    • (2010) BMC Bioinformatics , vol.11 , pp. 231
    • Popenda, M.1    Szachniuk, M.2    Blazewicz, M.3    Wasik, S.4    Burke, E.K.5    Blazewicz, J.6    Adamiak, R.W.7
  • 6
    • 77954288981 scopus 로고    scopus 로고
    • IPARTS: An improved tool of pairwise alignment of RNA tertiary structures
    • Wang, C.W., Chen, K.T. and Lu, C.L. (2010) iPARTS: an improved tool of pairwise alignment of RNA tertiary structures. Nucleic Acids Res., 38, W340-W347.
    • (2010) Nucleic Acids Res. , vol.38
    • Wang, C.W.1    Chen, K.T.2    Lu, C.L.3
  • 7
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • DOI 10.1093/nar/25.17.3389
    • Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402. (Pubitemid 27359211)
    • (1997) Nucleic Acids Research , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 8
    • 0344012516 scopus 로고    scopus 로고
    • RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space
    • DOI 10.1093/nar/gkg682
    • Duarte, C.M., Wadley, L.M. and Pyle, A.M. (2003) RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space. Nucleic Acids Res., 31, 4755-4761. (Pubitemid 37441838)
    • (2003) Nucleic Acids Research , vol.31 , Issue.16 , pp. 4755-4761
    • Duarte, C.M.1    Wadley, L.M.2    Pyle, A.M.3
  • 9
    • 36448954303 scopus 로고    scopus 로고
    • FR3D: Finding local and composite recurrent structural motifs in RNA 3D structures
    • DOI 10.1007/s00285-007-0110-x, RNA: Advances in algorithms and mathematics related to the structural biology of RNA
    • Sarver, M., Zirbel, C.L., Stombaugh, J., Mokdad, A. and Leontis, N.B. (2008) FR3D: finding local and composite recurrent structural motifs in RNA 3D structures. J. Math. Biol., 56, 215-252. (Pubitemid 350172192)
    • (2008) Journal of Mathematical Biology , vol.56 , Issue.1-2 , pp. 215-252
    • Sarver, M.1    Zirbel, C.L.2    Stombaugh, J.3    Mokdad, A.4    Leontis, N.B.5
  • 10
    • 0025259313 scopus 로고
    • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
    • Karlin, S. and Altschul, S.F. (1990) Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl Acad. Sci. USA, 87, 2264-2268.
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    • Karlin, S.1    Altschul, S.F.2
  • 11
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    • The estimation of statistical parameters for local alignment score distributions
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  • 12
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    • Comprehensive evaluation of protein structure alignment methods: Scoring by geometric measures
    • DOI 10.1016/j.jmb.2004.12.032
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    • Kolodny, R.1    Koehl, P.2    Levitt, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.