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Volumn 12, Issue SUPPL. 4, 2011, Pages

Deploying mutation impact text-mining software with the SADI Semantic Web Services framework

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATIC DISCOVERY; BIOLOGICAL ENTITIES; INTEGRATION PROBLEMS; MULTIPLE CONTEXTS; MULTIPLE USE-CASES; SCIENTIFIC DOCUMENTS; SEMANTIC DATABASE; SEMANTIC DESCRIPTIONS;

EID: 79959991706     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-S4-S6     Document Type: Article
Times cited : (16)

References (32)
  • 1
    • 34547844156 scopus 로고    scopus 로고
    • Manual annotation is not sufficient for curating genomic databases
    • 10.1093/bioinformatics/btm229, 2516305, 17646325
    • Baumgartner WA, Cohen KB, Fox L, Acquaah-Mensah G, Hunter L. Manual annotation is not sufficient for curating genomic databases. Bioinformatics 2007, 23:i41-i48. 10.1093/bioinformatics/btm229, 2516305, 17646325.
    • (2007) Bioinformatics , vol.23
    • Baumgartner, W.A.1    Cohen, K.B.2    Fox, L.3    Acquaah-Mensah, G.4    Hunter, L.5
  • 2
    • 78649772291 scopus 로고    scopus 로고
    • Algorithms and semantic infrastructure for mutation impact extraction and grounding
    • 10.1186/1471-2164-11-S4-S24, 3005927, 21143808
    • Laurilla J, Naderi N, Witte R, Riazanov A, Kouznetsov A, Baker CJO. Algorithms and semantic infrastructure for mutation impact extraction and grounding. BMC Genomics 2010, 11(Suppl 4):S24. 10.1186/1471-2164-11-S4-S24, 3005927, 21143808.
    • (2010) BMC Genomics , vol.11 , Issue.SUPPL. 4
    • Laurilla, J.1    Naderi, N.2    Witte, R.3    Riazanov, A.4    Kouznetsov, A.5    Baker, C.J.O.6
  • 4
    • 0034730181 scopus 로고    scopus 로고
    • The importance of reactant positioning in enzyme catalysis: a hybrid quantum mechanics/molecular mechanics study of a haloalkane dehalogenase
    • 27632, 10963662
    • Lau EY, Kahn K, Bash P, Bruice T. The importance of reactant positioning in enzyme catalysis: a hybrid quantum mechanics/molecular mechanics study of a haloalkane dehalogenase. Proc. Natl. Acad. Sci. USA 2000, 97(18):9937-42. 27632, 10963662.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , Issue.18 , pp. 9937-9942
    • Lau, E.Y.1    Kahn, K.2    Bash, P.3    Bruice, T.4
  • 6
    • 84871726751 scopus 로고    scopus 로고
    • Mutation Impact Ontology
    • Mutation Impact Ontology. , http://unbsj.biordf.net/ontologies/mutation-impact-ontology.owl
  • 7
    • 35349006936 scopus 로고    scopus 로고
    • Enhanced semantic access to the protein engineering literature using ontologies populated by text mining
    • Witte R, Kappler T, Baker CJO. Enhanced semantic access to the protein engineering literature using ontologies populated by text mining. Int J Bioinform Res Appl 2007, 3(3).
    • (2007) Int J Bioinform Res Appl , vol.3 , Issue.3
    • Witte, R.1    Kappler, T.2    Baker, C.J.O.3
  • 9
    • 15744362188 scopus 로고    scopus 로고
    • SPARQL Query Language for RDF, W3C Recommendation 15 January 2008
    • SPARQL Query Language for RDF, W3C Recommendation 15 January 2008. , http://www.w3.org/TR/rdf-sparql-query/
  • 10
    • 84871762970 scopus 로고    scopus 로고
    • Mutation Impact RDF triplestore SPARQL endpoint
    • Mutation Impact RDF triplestore SPARQL endpoint. , http:// unbsj.biordf.net/ openrdf-workbench/repositories/new-mut ation-impact-db/query. Authentication data: user.=trustedguest, password=semanticsworks
  • 11
    • 77949643689 scopus 로고    scopus 로고
    • SADI Semantic Web Services - 'cause you can't always GET what you want!
    • Wilkinson MD, Vandervalk B, McCarthy L. SADI Semantic Web Services - 'cause you can't always GET what you want!. AP-SCC 2009, 13-18.
    • (2009) AP-SCC , pp. 13-18
    • Wilkinson, M.D.1    Vandervalk, B.2    McCarthy, L.3
  • 12
    • 78650823775 scopus 로고    scopus 로고
    • SADI, SHARE, and the in silico scientific method
    • 10.1186/1471-2105-11-S12-S7, 3040533, 21210986
    • Wilkinson M, McCarthy L, Vandervalk B, Withers D, Kawas E, Samadian S. SADI, SHARE, and the in silico scientific method. BMC Bioinformatics 2010, 11(Suppl 12):S7. 10.1186/1471-2105-11-S12-S7, 3040533, 21210986.
    • (2010) BMC Bioinformatics , vol.11 , Issue.SUPPL. 12
    • Wilkinson, M.1    McCarthy, L.2    Vandervalk, B.3    Withers, D.4    Kawas, E.5    Samadian, S.6
  • 14
    • 84888279971 scopus 로고    scopus 로고
    • SADI service computing the body mass index
    • SADI service computing the body mass index. , http://sadiframework.org/ examples/calculateBMI
  • 15
    • 78649852459 scopus 로고    scopus 로고
    • OWL 2 Web Ontology Language Manchester Syntax
    • OWL 2 Web Ontology Language Manchester Syntax. , http://www.w3.org/TR/owl2-manchester-syntax/
  • 16
    • 84888280405 scopus 로고    scopus 로고
    • Notation 3
    • Notation 3. , http://www.w3.org/DesignIssues/Notation3
  • 17
    • 84888279302 scopus 로고    scopus 로고
    • Web interface for SHARE
    • Web interface for SHARE. , http:// biordf.net/cardioSHARE/
  • 18
    • 84888283820 scopus 로고    scopus 로고
    • Full versions of the SPARQL queries presented in this paper
    • Full versions of the SPARQL queries presented in this paper. , http://unbsj.biordf.net/mutation-impact/AIMM2010-BMC-Bioinformatics-supplementary-materials.html
  • 19
    • 84888276762 scopus 로고    scopus 로고
    • Central SADI registry
    • Central SADI registry. , http://sadiframework.org/registry/ services/
  • 20
    • 32544446344 scopus 로고    scopus 로고
    • FOAF Vocabulary Specification
    • FOAF Vocabulary Specification. , http://xmlns.com/foaf/spec/
  • 21
    • 84874758516 scopus 로고    scopus 로고
    • Semanticscience Integrated Ontology (project Web page)
    • Semanticscience Integrated Ontology (project Web page). , http://semanticscience.org
  • 24
    • 69549108299 scopus 로고    scopus 로고
    • From SNPs to pathways: integration of functional effect of sequence variations on models of cell signalling pathways
    • 2646702, 19126227
    • Bauer-Mehren A, Furlong LI, Rautschka M, Sanz F. From SNPs to pathways: integration of functional effect of sequence variations on models of cell signalling pathways. BMC Bioinformatics 2009, 10(S-8):6. 2646702, 19126227.
    • (2009) BMC Bioinformatics , vol.10 , Issue.8 , pp. 6
    • Bauer-Mehren, A.1    Furlong, L.I.2    Rautschka, M.3    Sanz, F.4
  • 25
    • 84888284514 scopus 로고    scopus 로고
    • SADI services based on the Mutation Impact pipeline and DB
    • SADI services based on the Mutation Impact pipeline and DB. , http://unbsj.biordf.net/mutation-impact
  • 27
    • 84888277166 scopus 로고    scopus 로고
    • Jmol Molecul Structure Viewer
    • Jmol Molecul Structure Viewer. , http://jmol.sourceforge.net/
  • 29
    • 0037935183 scopus 로고    scopus 로고
    • BioMOBY: An open source biological web services proposal
    • 10.1093/bib/3.4.331, 12511062
    • Wilkinson MD, Links M. BioMOBY: An open source biological web services proposal. Briefings in Bioinformatics 2002, 3(4):331-341. 10.1093/bib/3.4.331, 12511062.
    • (2002) Briefings in Bioinformatics , vol.3 , Issue.4 , pp. 331-341
    • Wilkinson, M.D.1    Links, M.2
  • 30
    • 0345359315 scopus 로고    scopus 로고
    • MyGrid: personalised bioinformatics on the information grid
    • Stevens RD, Robinson AJ, Goble CA. myGrid: personalised bioinformatics on the information grid. Bioinformatics 2003, 19(Suppl. 1):i302-i304.
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL. 1
    • Stevens, R.D.1    Robinson, A.J.2    Goble, C.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.