Proteomic analysis of global changes in protein expression during exposure of gamma radiation in Bacillus sp. HKG 112 isolated from saline soil

Journal of Microbiology and Biotechnology

Volumn 21, Issue 6, 2011, Pages 574-581

  Kumar, Gupta Anil ^a   Pathak, Rajiv ^a   Singh, Bharat ^a   Gautam, Hemlata ^a   Kumar, Ram ^a   Kumar, Raj ^b   Arora, Rajesh ^b   Gautam, Hemant K ^a  

^a CSIR INSTITUTE OF GENOMICS AND INTEGRATIVE BIOLOGY   (India)

^b INSTITUTE OF NUCLEAR MEDICINE AND ALLIED SCIENCES   (India)

Author keywords

16S rRNA gene sequencing; 2 D gel electrophoresis; Bacillus sp.; Gamma irradiation; LC MS MS; MALDI TOF TOF

Indexed keywords

DNA 16S; FLAGELLIN;

ARTICLE; BACILLUS; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CONTROLLED STUDY; DNA SEQUENCE; GAMMA RADIATION; GENE OVEREXPRESSION; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOLECULAR DYNAMICS; MORPHOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROKARYOTE; PROTEIN EXPRESSION; PROTEOMICS; RADIATION EXPOSURE; SOIL ANALYSIS;

BACILLUS; BACTERIAL PROTEINS; CHROMATOGRAPHY, LIQUID; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; FLAGELLIN; GAMMA RAYS; INDIA; MASS SPECTROMETRY; MEMBRANE GLYCOPROTEINS; MOLECULAR SEQUENCE DATA; PROTEOMICS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SOIL; SOIL MICROBIOLOGY; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

BACILLUS SP.; POSIBACTERIA;

EID: 79959955447     PISSN: 10177825     EISSN: 17388872     Source Type: Journal    
DOI: 10.4014/jmb.1012.12031     Document Type: Article

References (24)

1. Anderson, A. W., H. C. Nordon, R. F. Cain, G. Parrish, and D. Duggan. 1956. Studies on a radio-resistant Micrococcus: Isolation, morphology, cultural characteristics and resistance to gamma radiation. Food Technol. 10: 575-578.
2. Battista, J. R., A. M. Earl, and M. J. Park. 1999. Why is Deinococcus radiodurans so resistant to ionizing radiation? Trends Microbiol. 7: 362-365.
3. Bergey, D. H., J. G. Holt, N. R. Kreig, and P. H. A. Sneath. 1994. Bergey's Manual of Determinative Bacteriology, 9th Ed. Vol. 2. Williams and Wilkins, Baltimore.
4. Beveridge, T. J., P. H. Pouwels, M. Sara, A. Kotiranta, K. Lounatmaa, S. F. Koval, et al. 1997. Function of S-layers. FEMS Microbiol. Rev. 20: 99-149.
5. Blum, H., H. Beier, and H. J. Gross. 1987. Improved silver staining of plant proteins, RNA and DNA in polyacrylamide gels. Electrophoresis 8: 93-99.
6. Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72: 248-254.
7. Ferreira, A. C., M. F. Nobre, F. A. Rainey, M. T. Silv, R. Waite, J. Burghardt, A. P. Chung, and M. S. D. Costa. 1997. Deinococcus geothermalis sp. nov. and Deinococcus murrayi sp. nov., two extremely radiation-resistant and slightly thermophilic species from hot springs. Int. J. Syst. Bacteriol. 47: 939-947.
8. Gorg, A., W. Postel, and S. Gunther. 1988. The current state of two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis 9: 531-546.
9. Goto, K., T. Omura, Y. Hara, and Y. Sadaie. 2000. Application of the partial 16S rDNA sequence as an index for the rapid identification of species in the genus Bacillus. J. Gen. Appl. Microbiol. 46: 1-8.
10. Ito, H. 1977. Isolation of Micrococcus radiodurans occurring in radurized sawdust culture media of mushroom. Agric. Biol. Chem. 41: 35-41.
11. Ito, H., H. Watanabe, M. Takehisa, and H. Iizuka. 1983. Isolation and identification of radiation-resistant cocci belonging to the genus Deinococcus from sewage sludges and animal feeds. Agric. Biol. Chem. 47: 1239-1247.
12. Jolivet, E., E. Corre, S. L'Haridon, P. Forterre, and D. Prieur. 2004. Thermococcus marinus sp. nov. and Thermococcus radiotolerans sp. nov., two hyperthermophilic archaea from deepsea hydrothermal vents that resist ionizing radiation. Extremophiles 8: 219-227.
13. Kotiranta, A. K., H. Ito, M. P. Haapasalo, and K. Lounatma. 1999. A radiation sensitivity of Bacillus cereus with and without a crystalline surface protein layer. FEMS Microbiol Lett. 179: 275-280.
14. Matam, V. K., D. A. Jesse, J. S. Catherine, F. Amena, M. S. Valerie, Xu. Jianguo, S. N. Andrew, R. Mauricio, and T. G. Andrew. 2008. Flagellin treatment protects against chemicals, bacteria, viruses, and radiation. J. Immunol. 180: 8280-8285.
15. Minton, K. W. 1994. DNA repair in the extremely radio-resistant bacterium Deinococcus radiodurans. Mol. Microbiol. 13: 9-15.
16. Nishimura, Y., T. Ino, and H. Iizuka. 1988. Acinetobacter radioresistens sp. nov. isolated from cotton and soil. Int. J. Syst. Bacteriol. 38: 209-211.
17. Rainey, F. A., K. Ray, M. Ferreira, B. Z. Gatz, M. F. Nobre, D. Bagaley, et al. 2005. Extensive diversity of ionizing-radiationresistant bacteria recovered from Sonoran desert soil and description of nine new species of the genus Deinococcus obtained from a single soil sample. Appl. Environ. Microbiol. 71: 5225-5235.
18. Rakesh, O. D., R. Pathak, A. S. Dhaker, R. Arora, R. Kumar, R. Rajaram, and H. K. Gautam. 2011. Isolation, characterization and bioactivity of deep sea bacteria with special reference to induction of antibacterial and antioxidant metabolites following gamma irradiation. Can. J. Pure Appl. Sci. 5: 1363-1370.
19. Sambrook, J. and D. Russell. 2001. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
20. Shukla, M., R. Chaturvedi, D. Tamhane, P. Vyas, G. Archana, S. Apte, J. Bandekar, and A. Desai. 2007. Multiple-stress tolerance of ionizing radiation resistant bacterial isolates obtained from various habitats: Correlation between stresses. Curr. Microbiol. 54: 142-148.
21. Thornley, M. J. 1963. Radiation resistance among bacteria. J. Appl. Bacteriol. 26: 334-345.
22. Welch, A. B. and R. B. Maxcy. 1975. Characterization of radiationresistant vegetative bacteria in beef. Appl. Microbiol. 30: 242-250.
23. Yazdani, M., H. N. Manesh, K. Khajeh, M. R. Soudi, S. M. Asghari, and M. Sharifzadeh. 2009. Isolation and characterization of a novel λ-radiation-resistant bacterium from hot spring in Iran. J. Basic Microb. 49: 119-127.
24. Zhang, C., J. Wei, Z. Zheng, N. Ying, D. Sheng, and Y. Hua. 2005. Proteomic analysis of Deinococcus radiodurans recovering from γ-irradiation. Proteomics 5: 138-143.