Label-free electrochemical detection of the specific oligonucleotide sequence of dengue virus type I on pencil graphite electrodes

Sensors

Volumn 11, Issue 6, 2011, Pages 5616-5629

  Souza, Elaine ^a   Nascimento, Gustavo ^a   Santana, Nataly ^a   Ferreira, Danielly ^a   Lima, Manoel ^a   Natividade, Edna ^a   Martins, Danyelly ^a   José, Lima Filho ^a  

^a FEDERAL UNIVERSITY OF PERNAMBUCO   (Brazil)

Author keywords

Dengue virus; Guanine oxidation; Nucleic acid biosensor

Indexed keywords

GRAPHITE; GUANINE; NUCLEIC ACID; OLIGONUCLEOTIDE; VIRUS DNA;

ADSORPTION; ARTICLE; BIOLOGY; CHEMISTRY; DENGUE VIRUS; DNA PROBE; ELECTROCHEMISTRY; ELECTRODE; GENETIC PROCEDURES; GENETICS; HUMAN; METHODOLOGY; NUCLEIC ACID HYBRIDIZATION; PH; TIME;

ADSORPTION; BIOSENSING TECHNIQUES; COMPUTATIONAL BIOLOGY; DENGUE VIRUS; DNA PROBES; DNA, VIRAL; ELECTROCHEMISTRY; ELECTRODES; GRAPHITE; GUANINE; HUMANS; HYDROGEN-ION CONCENTRATION; NUCLEIC ACID HYBRIDIZATION; NUCLEIC ACIDS; OLIGONUCLEOTIDES; TIME FACTORS;

EID: 79959854471     PISSN: 14248220     EISSN: None     Source Type: Journal    
DOI: 10.3390/s110605616     Document Type: Article

References (40)

1. Barrett, A.D.T.; Stanberry, L.R. Dengue. In Vaccines for Biodefense and Emerging and Neglected Diseases, 1st ed.; Vaughn, D.W., Whitehead, S.S., Durbin, A.P., Eds.; Elsevier. New York, NY, USA, 2009; pp. 288-313.
2. Araujo, J.M.; Nogueira, R.M.; Schatzmayr, H.G.; Zanotto, P.M.; Bello, G. Phylogeography and evolutionary history of dengue virus type 3. Infect. Genet. Evol. 2009, 9, 716-725.
3. Santos, H.; Tai, M.H. H.; Rocha, L.F.N.; Silva, H.H. G.; Luz, C. Dependence of Metarhizium anisopliae on high humidity for ovicidal activity on Aedes aegypti Adelair. Biol. Contr. 2009, 50, 37-42.
4. Ribeiro, K.A.; de Carvalho, C.M.; Molina, M.T.; Lima, E.P.; Lopez-Montero, E.; Reys, J.R.; de Oliveira, M.B.; Pinto, A.V.; Santana, A.E.; Goulart, M.O. Activities of naphthoquinones against Aedes aegypti (Linnaeus, 1762) (Diptera: Culicidae), vector of dengue and Biomphalaria glabrata (Say, 1818), intermediate host of Schistosoma mansoni. Acta Tropica 2009, 111, 44-50.
5. Siqueira, J.B., Jr.; Martelli, C.M.; Coelho, G.E.; Simplicio, A.C.; Hatch, D.L. Dengue and dengue hemorrhagic fever, Brazil, 1981-2002. Emerg. Infect. Dis. 2005, 11, 48-53.
6. Teixeira, M.G; Costa, M.C.; Barreto, N.F.; Barreto, M.L. Dengue: Twenty-five years since reemergence in Brazil. Caderno de Saúde Publica 2009, 25, 7-18.
7. Braga, C.; Luna, C.F.; Martelli, C.M.; de Souza, W.V.; Cordeiro, M.T.; Alexander, N.; de Albuquerque, M.F.; Junior, J.C.; Marques, E.T. Seroprevalence and risk factors for dengue infection in socio-economically distinct areas of Recife, Brazil. Acta Tropica 2010, 113, 234-240.
8. Zaytseva, N.V.; Montagna, R.A.; Baeumner, A.J. Microfluidic biosensor for the serotype-specific detection of dengue virus RNA. Anal. Chem. 2005, 77, 7520-7527.
9. Guzman, M.G.; Kouri, G. Dengue: An update. Lancet Infect. Dis. 2002, 2, 33-42.
10. Guzman, M.G.; Kouri, G. Dengue diagnosis, advances and challenges. Int. J. Infect. Dis. 2004, 8, 69-80.
11. Lee, N.Y.; Jung, Yun K.; Park, H.G. On-chip colorimetric biosensor based on polydiacetylene (PDA) embedded in photopolymerized poly(ethylene glycol) diacrylate (PEG-DA) hydrogel. Biochem. Eng. J. 2006, 29, 103-108.
12. Hejazi, M.S.; Pournaghi-Azar, M.H.; Alipour, E.; Karimi, F. Construction, electrochemically biosensing and discrimination of recombinant plasmid (pEThIL-2) on the basis of interleukine-2 DNA insert. Biosens.Bioelectron. 2008, 23, 1588-1594.
13. Karamollaoǧlu, H.A.; Oktem, M.M. QCM-based DNA biosensor for detection of genetically modified organisms (GMOs). Biochem. Eng. J. 2009, 44, 142-150.
14. Souza, E.V.M.; Nascimento, G.A.; Santana, N.A.; Bruneska, D.; Lima Filho, J.L. Development of electrochemical biosensor for virus dengue diagnostic using graphite electrode. New Biotechnol. 2009, 25, 378.
15. Meric, B.; Kerman, K.; Ozkan, D.; Kara, P.; Erensoy, S.; Akarca, U.S.; Mascini, M.; Ozsoz, M. Electrochemical DNA biosensor for the detection of TT and Hepatitis B virus from PCR amplified real samples by using methylene blue. Talanta 2002, 56, 837-846.
16. Teles, F.R.R.; Prazeres, D.M.F.; Lima-Filho, J.L. Electrochemical detection of a dengue-related oligonucleotide sequence using ferrocenium as a hybridization indicator. Sensors 2007, 7, 2510-2518.
17. Drummond, T.G.; Hill, M.G.; Barton, J.K. Electrochemical DNA sensors. Nat. Biotechnol. 2003, 21, 1192-1199.
18. Marrazza, G.; Chianella, I.; Mascini, M. Disposable DNA electrochemical biosensors for environmental monitoring. Anal. Chim. Acta 1997, 387, 297-307.
19. Ozkan, D.; Erdem, A.; Kara, P.; Kerman, K.; Meric, B.; Hassmann, J.; Ozsoz, M. Allele-specific genotype detection of factor V Leiden mutation from polymerase chain reaction amplicons based on label-free electrochemical genosensor. Anal. Chem. 2002, 74, 5931-5936.
20. Deubel, V.; Laille, M.; Hugnot, J.P.; Chungue, E.; Guesdon, J.L.; Drouet, M.T.; Bassot, S.; Chevrier, D. Identification of dengue sequences by genomic amplification: Rapid diagnosis of dengue virus serotypes in peripheral blood. J. Virol. Meth. 1990, 30, 41-54.
21. Wang, Y.; Xu, H.; Zhang J.; Li, G. Electrochemical Sensors for Clinic Analysis. Sensors 2008, 8, 2043-2081.
22. Wang, J.; Rivas, G.; Fernandes, J.R.; Paz, J.L.L.; Jiang, M.; Waymire, R. Indicator-free electrochemical DNA hybridization biosensor. Anal. Chim. Acta 1998, 375, 197-203.
23. Sabzi, R.E.; Sehatnia, B.; Pournaghi-Azar, M.H.; Hejazi, M.S. Electrochemical detection of human papilloma vírus (HPV) target DNA using MB on pencial graphite electrode. J. Iran. Chem. Soc. 2008, 5, 476-483.
24. Dogan-Topal, B.; Uslu, B.; Ozkan, S.A. Voltammetric studies on the HIV-1 inhibitory drug Efavirenz: the interaction between dsDNA and drug using electrochemical DNA biosensor and adsorptive stripping voltammetric determination on disposable pencil graphite electrode. Biosens. Bioelectron. 2009, 24, 2358-2364.
25. Sukhorukov, G.B.; Montrel, M.M.; Petrov, A.I.; Shabarchina, L.I.; Sukhorukov, B.I.; Multilayer films containing immobilized nucleic acids. Their structure and possibilities in biosensor applications. Biosens. Bioelectron. 1996, 11, 913-922.
26. Brett, A.M.O.; Serrano, S.H.P. The electrochemical oxidation of DNA. J. Braz. Chem. Soc. 1995, 6, 97-100.
27. Palecek, E.; Fojta, M.; Tomschik, M.; Wang, J. Electrochemical biosensors for DNA hybridization and DNA damage. Biosens. Bioelectron. 1998, 13, 621-628.
28. Yardim, Y.; Keskin, E.; Levent, A.; Ozsoz, M.; Senturk, Z. Voltammetric studies on the potent carcinogen, 7,12-dimethylbenz[a]anthracene: Adsorptive stripping voltammetric determination in bulk aqueous forms and human urine samples and detection of DNA interaction on pencil graphite electrode. Talanta 2010, 80, 1347-1355.
29. Pournaghi-Azar, M.H.; Hejazi, M.S.; Alipour, E. Developing an electrochemical deoxyribonucleic acid (DNA) biosensor on the basis of human interleukine-2 gene using an electroactive label. Anal. Chim. Acta 2006, 570, 144-150.
30. Wang, J.; Cai, X.; Rivas, G.; Shiraishi, H.; Dontha, N. Nucleic-acid immobilization, recognition and detection at chronopotentiometric DNA chips. Biosens. Bioelectron. 1997, 12, 587-599.
31. Pournaghi-Azar, M.H.; Hejazi, M.S.; Alipour, E. Detection of hunan interleukine-2 gene using a label-free electrochemical DNA hybridization biosensor on the basis of non-inosine substitued probe. Electroanalysis 2007, 19, 466-472.
32. Tosar, J.P.; Kell, K.; Laíz, J. Two independent label-free detection methods in one electrochemical DNA sensor. Biosens. Bioelectron. 2009, 24, 3036-3042.
33. Baeummer, A.J.; Cohen, R.N.; Miksic, V.; Min, J. RNA biosensor for the rapid detection of viable Escherichia coli in drinking water. Biosens. Bioelectron. 2003, 18, 405-413.
34. Gumustas, M.; Ozkzn, S.A. The role of and the place of method validation in drug analysis using electroanalytical techniques. Open Anal. Chem. J. 2011, 5, 1-21.
35. Zhu, D.; Tang, Y.; Xing, D.; Chen W.R. PCR-free quantitative detection of genetically modified organism from raw materials. An electrochemiluminescence-based bio bar code method. Analytical Chemistry 2008, 80, 3566-3571.
36. Zhang, S.; Tan, Q.; Li, F.; Zhang, X. Hybridization biosensor using diaquabis[N-(2-pyridinylmethyl)benzamide-κ2N,O]-cadmium(II) dinitrate as a new electroactive indicator for detection of human hepatitis B virus DNA. Sens. Actuat. B 2007, 124, 290-296.
37. Nasirizadeh, N.; Zare, H.R.; Pournaghi-Azar, M.H.; Hejazi, M.S. Introduction of hematoxylin as an electroactive label for DNA biosensors and its employment in detection of target DNA sequence and single-base mismatch in human papilloma virus corresponding to oligonucleotide. Biosens. Bioelectron. 2011, 26, 2638-2644.
38. Pournaghi-Azar, M.H.; Ahour, F.; Hejazi, M.S. Differential pulse voltammetric detection of Hepatitis C virus 1a oligonucleotide chain by a label-free electrochemical dna hybridization biosensor using consensus sequence of Hepatitis C virus 1a probe on the pencil graphite electrode. Electroanalysis 2009, 21, 1822-1828.
39. Raoof, J.B.; Ojani, R.; Golabi, S.M.; Hamidi-Asl, E.; Hejazi, M.S. Preparation of an electrochemical PNA biosensor for detection of target DNA sequence and single nucleotide mutation on p53 tumor suppressor gene corresponding oligonucleotide. Sens. Actuat. B 2011, in press.
40. Hejazi, M.S.; Raoof, J.; Ojani, R.; Golabi, S.M.; Asl, E.H. Brilliant cresyl blue as electroactive indicator in electrochemical DNA oligonucleotide sensors. Bioelectrochemistry 2010, 78, 141-146.