Phaeospirillum oryzae sp. nov., a spheroplastforming, phototrophic alphaproteobacterium from a paddy soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 7, 2011, Pages 1656-1661

  Lakshmi, K V N S ^a   Sasikala, Ch ^a   Takaichi, S ^b   Ramana, Ch V ^c  

^a JAWAHARLAL NEHRU TECHNOLOGICAL UNIVERSITY   (India)

^b NIPPON MEDICAL SCHOOL   (Japan)

^c UNIVERSITY OF HYDERABAD   (India)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIOCHLOROPHYLL A; CAROTENOID; FATTY ACID; GENOMIC DNA; LYCOPENE; PIGMENT; RHODOPIN; RHODOPIN GLUCOSIDE; RNA 16S; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL STRAIN; CHEMOTAXONOMY; DNA HYBRIDIZATION; GENE SEQUENCE; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHAEOSPIRILLUM CHANDRAMOHANII; PHAEOSPIRILLUM FULVUM; PHAEOSPIRILLUM MOLISCHIANUM; PHAEOSPIRILLUM ORYZAE; PHYLOGENY; PRIORITY JOURNAL; RHODOSPIRILLACEAE; SOIL; SPHEROPLAST; BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; INDIA; ISOLATION AND PURIFICATION; MICROBIOLOGY; NUCLEIC ACID HYBRIDIZATION; RHIZOSPHERE; RICE;

ALPHAPROTEOBACTERIA; NEGIBACTERIA; PHAEOSPIRILLUM; PHAEOSPIRILLUM FULVUM; PHAEOSPIRILLUM MOLISCHIANUM; PROTEOBACTERIA; RHODOSPIRILLACEAE;

BACTERIAL TYPING TECHNIQUES; BACTERIOCHLOROPHYLL A; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; INDIA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; ORYZA SATIVA; PHYLOGENY; RHIZOSPHERE; RHODOSPIRILLACEAE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPHEROPLASTS;

EID: 79959814033     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.025544-0     Document Type: Article

References (23)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Anil Kumar, P., Srinivas, T. N. R., Takaichi, S., Maoka, T., Sasikala, Ch. & Ramana, Ch. V. (2009). Phaeospirillum chandramohanii sp. nov., a phototrophic alphaproteobacterium with carotenoid glycosides. Int J Syst Evol Microbiol 59, 2089-2093.
3. Biebl, H. & Pfennig, N. (1981). Isolation of members of the family Rhodospirillaceae. In The Prokaryotes: a Handbook on Habitats, Isolation and Identification of Bacteria, vol. 1, pp. 267-273. Edited by M. P. Starr, H. Stolp, H. G. Trüper, A. Balows & H. G. Schlegel.New York: Springer
4. Brosius, J., Palmer, M. L., Kennedy, P. J. & Noller, H. F. (1978). Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci U S A 75, 4801-4805.
5. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
6. Hanada, S., Takaichi, S., Matsuura, K. & Nakamura, K. (2002). Roseiflexus castenholzii gen. nov., sp. nov., a thermophilic, filamentous, photosynthetic bacterium that lacks chlorosomes. Int J Syst Evol Microbiol 52, 187-193.
7. Imhoff, J. F. (2005a). Genus I. Rhodospirillum Molisch 1907, 24AL emend. Imhoff, Petri and Süling 1998, 796. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2C, pp. 1-6. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
8. nd edn, vol. 2C, pp. 32-33. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
9. Imhoff, J. F. & Pfennig, N. (2001). Thioflavicoccus mobilis gen. nov., sp. nov., a novel purple sulfur bacterium with bacteriochlorophyll b. Int J Syst Evol Microbiol 51, 105-110.
10. Imhoff, J. F., Suling, J. & Petri, R. (1998a). Reclassification of species of the spiral-shaped phototrophic purple non-sulfur bacteria of the a-Proteobacteria: description of the new genera Phaeospirillum gen. nov., Rhodovibrio gen. nov., Rhodothalassium gen. nov. and Roseospira gen. nov. as well as transfer of Rhodospirillum fulvum to Phaeospirillum fulvum comb. n v., of Rhodospirillum molischianum to Phaeospirillum molischianum comb. nov., of Rhodospirillum salinarum to Rhodovibrio salinarum comb. nov., of Rhodospirillum sodomense to Rhodovibrio sodomensis comb. nov., of Rhodospirillum salexigens to Rhodothalassium salexigens comb. nov. and of Rhodospirillum mediosalinum to Roseospira mediosalina comb. nov. Int J Syst Bacteriol 48, 793-798.
11. Imhoff, J. F., Suling, J. & Petri, R. (1998b). Phylogenetic relationships among the Chromatiaceae, their taxonomic reclassification and description of the new genera Allochromatium, Halochromatium, Isochromatium, Marichromatium, Thiococcus, Thiohalocapsa and Thermochromatium. Int J Syst Bacteriol 48, 1129-1143.
12. Lane, D. J., Pace, B., Olsen, G. J., Stahl, D. A., Sogin, M. L. & Pace, N. R. (1985). Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc Natl Acad Sci U S A 82, 6955-6959.
13. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
14. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
15. Sanger, F., Nicklen, S. & Coulson, A. R. (1977). DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A 74, 5463-5467.
16. Sasser, M. (1990). Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids. Newark, DE: MIDI Inc.
17. Schichnes, D., Nemson, J. A. & Ruzin, S. E. (2006). Fluorescent staining method for bacterial endospores. Microscope 54, 91-94.
18. Seldin, L. & Dubnau, D. (1985). Deoxyribonucleic acid homology among Bacillus polymyxa, Bacillus macerans, Bacillus azotofixans and other nitrogen-fixing Bacillus strains. Int J Syst Bacteriol 35, 151-154.
19. Takaichi, S. & Shimada, K. (1992). Characterization of carotenoids in photosynthetic bacteria. Methods Enzymol 213, 374-385.
20. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
21. Truper, H. G. & Pfennig, N. (1981). Characterization and identification of the anoxygenic phototrophic bacteria. In The Prokaryotes: a Handbook on Habitats, Isolation and Identification of Bacteria, vol. 1, pp. 298-312. Edited by M. P. Starr, H. Stolp, H. G. Trüper, A. Balows & H. G. Schlegel. New York: Springer
22. Tulasne, R., Minck, R., Kirn, A. & Krembel, J. (1960). [Delimitation of the concept of L forms of bacteria: protoplasts, spheroplasts and L forms]. Ann Inst Pasteur (Paris) 99, 859-874 (in French).
23. Voss, J. G. (1964). Lysozyme lysis of gram-negative bacteria without production of spheroplasts. J Gen Microbiol 35, 313-317.