Herbicide degradation and copper complexation by bacterial mixed cultures from a vineyard stormwater basin

Journal of Soils and Sediments

Volumn 11, Issue 5, 2011, Pages 860-873

  Bois, Paul ^a   Huguenot, David ^a   Norini, Marie Paule ^a   Haque, Muhammad Farhan Ul ^b   Vuilleumier, Stéphane ^b   Lebeau, Thierry ^a  

^a UNIVERSITÉ DE HAUTE ALSACE   (France)

^b UNIVERSITÉ DE STRASBOURG   (France)

Author keywords

Bioremediation; Copper; Diuron; Glyphosate; Ribosomal 16S rRNA gene; Siderophores

Indexed keywords

ADAPTATION; AGRICULTURAL RUNOFF; BACTERIUM; BIODEGRADATION; BIOREMEDIATION; COMMUNITY DYNAMICS; COMPLEXATION; CONSTRUCTED WETLAND; COPPER; ELECTROKINESIS; HERBICIDE; METABOLITE; MICROBIAL COMMUNITY; POLLUTANT REMOVAL; POLYMERASE CHAIN REACTION; RHIZOSPHERE; SIDEROPHORE; STORMWATER; TRANSFORMATION; VINEYARD;

FRANCE;

ARTHROBACTER; ARTHROBACTER SP.; BACTERIA (MICROORGANISMS); BREVUNDIMONAS; DELFTIA ACIDOVORANS; PSEUDOMONAS PUTIDA;

EID: 79959792389     PISSN: 14390108     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11368-011-0354-3     Document Type: Article

References (73)

1. Aubertot JN, Barbier JM, Carpentier A, Gril JJ, Guichard L, Lucas P, Savary S, Savini I, Voltz, M (2005) Pesticides, agriculture et environnement. Réduire l'utilisation des pesticides et en limiter les impacts environnementaux. Rapport d'expertise scientifique collective. INRA et CEMAGREF, Paris.
2. Banas D, Marin B, Skraber S, Chopin EIB, Zanella A (2010) Copper mobilisation affected by weather conditions in a stormwater detention system receiving runoff waters from vineyard soils (Champagne, France). Environ Pollut 158: 476-482.
3. Batisson I, Pesce S, Besse-Hoggan P, Sancelme M, Bohatier J (2007) Isolation and characterization of diuron-degrading bacteria from lotic surface water. Microb Ecol 54: 761-770.
4. Bazot S, Lebeau T (2008). Simultaneous mineralization of glyphosate and diuron by a consortium of three bacteria as free- and/or immobilized-cells formulations. Appl Microbiol Biotechnol 77: 1351-1358.
5. Bazot S, Bois P, Joyeux C, Lebeau T (2007) Mineralization of diuron [3-(3, 4-dichlorophenyl)-1, 1-dimethylurea] by co-immobilized Arthrobacter sp. and Delftia acidovorans. Biotechnol Lett 29: 749-754.
6. Bouldin JL, Farris JL, Moore MT, Smith S Jr, Cooper CM (2006) Hydroponic uptake of atrazine and lambda-cyhalotrin in Juncus effusus and Ludwigia peploides. Chemosphere 65: 1049-1057.
7. Bragato C, Brix H, Malagoli M (2006) Accumulation of nutrients and heavy metals in Phragmites australis (Cav.) Trin. ex Steudel and Bolboschoenus maritimus (L.) Palla in a constructed wetland of the Venice lagoon watershed. Environ Pollut 144: 967-975.
8. Braid M, Daniels LM, Kitts CL (2003) Removal of PCR inhibitors from soil DNA by chemical flocculation. J Microbiol Meth 52: 389-393.
9. Braud A, Hoegy F, Jezequel K, Lebeau T, Schalk IJ (2009) New insights into the metal specificity of the Pseudomonas aeruginosa pyoverdine-iron uptake pathway. Environ Microbiol 11: 1079-1091.
10. Calheiros CSC, Duque AF, Moura A, Henriques IS, Correia A, Rangel AOSS, Castro PML (2009) Changes in the bacterial community structure in two-stage constructed wetlands with different plants for industrial wastewater treatment. Bioresour Technol 100: 3228-3235.
11. Cardinale M, Brusetti L, Quatrini P, Borin S, Puglia AM, Rizzi A, Zanardini E, Sorlini C, Corselli C, Daffonchio D (2004) Comparison of different primer sets for use in automated ribosomal intergenic spacer analysis of complex bacterial communities. Appl Environ Microbiol 70: 6147-6156.
12. Carter A (2000) How pesticides get into water-and proposed reduction measures. Pestic Outlook 11: 149-156.
13. Cullington JE, Walker A (1999) Rapid biodegradation of diuron and other phenylurea herbicides by a soil bacterium. Soil Biol Biochem 31: 677-686.
14. Dejonghe W, Berteloot E, Goris J, Boon N, Crul K, Maertens S, Höfte M, De Vos P, Verstraete W, Top EM (2003) Synergistic degradation of linuron by a bacterial consortium and isolation of a single linuron-degrading Variovorax strain. Appl Environ Microbiol 69: 1532-1541.
15. Dessai DVG, Nayak GN, Basavaiah N (2009) Grain size, geochemistry, magnetic susceptibility: proxies in identifying sources and factors controlling distribution of metals in a tropical estuary, India. Estuar Coast Shelf Sci 85: 307-318.
16. Dick RE, Quinn JP (1995) Glyphosate-degrading isolates from environmental samples: occurrence and pathways of degradation. Appl Microbiol Biotechnol 43: 545-550.
17. El-Deeb BA, Soltan SM, Ali AM, Ali KA (2000) Detoxification of the herbicide diuron by Pseudomonas sp. Folia Microbiol 45: 211-216.
18. El-Fantroussi S (2000) Enrichment and molecular characterization of a bacterial culture that degrades methoxy-methyl urea herbicides and their aniline derivatives. Appl Environ Microbiol 66: 5110-5115.
19. El-Fantroussi S, Verschuere L, Verstraete W, Top EM (1999) Effect of phenylurea herbicides on soil microbial communities estimated by analysis of 16SrRNA gene fingerprints and community-level physiological profiles. Appl Environ Microbiol 65: 982-988.
20. Ellis PA, Camper ND (1982) Aerobic degradation of diuron by aquatic microorganisms. J Environ Sci Health B 17: 277-289.
21. Felske A, Akkermans ADL, De Vos WM (1998) Quantification of 16S rRNA in complex bacterial communities by multiple competitive reverse transcription-PCR in temperature gradient gel electrophoresis fingerprints. Appl Environ Microbiol 64: 4581-4587.
22. Field JA, Reed RL, Sawyer TE, Griffith SM, Wigington PJ (2003) Diuron occurrence and distribution in soil and surface and ground water associated with grass seed production. J Environ Qual 32: 171-179.
23. Grégoire C, Elsaesser D, Huguenot D, Lange J, Lebeau T, Merli A, Mosé R, Passeport E, Payraudeau S, Schutz T, Schulz R, Tapia-Padilla G, Tournebize J, Trevisan M, Wanko A (2009) Mitigation of agricultural nonpoint-source pesticide pollution in artificial wetland ecosystems. Environ Chem Lett 7: 205-231.
24. Grégoire C, Payraudeau S, Domange N (2010) Use and fate of 17 pesticides applied on a vineyard catchment. Int J Environ Anal Chem 90: 406-420.
25. Hernando MD, Ejerhoon M, Fernández-Alba AR, Chisti Y (2003) Combined toxicity effects of MTBE and pesticides measured with Vibrio fischeri and Daphnia magna bioassays. Water Res 37: 4091-4098.
26. Heuer H, Hartung K, Wieland G, Kramer I, Smalla K (1999) Polynucleotide probes that target a hypervariable region of 16S-RNA genes to identify bacterial isolates corresponding to bands of community fingerprints. Appl Environ Microbiol 65: 1045-1049.
27. Huang J, Su Z, Xu Y (2005) The evolution of microbial phosphonate degradative pathways. J Mol Evol 61: 682-690.
28. Huguenot D, Bois P, Jézéquel K, Cornu JY, Lebeau T (2010) Selection of low cost materials for the sorption of copper and herbicides as single or mixed compounds in matrices of increasing complexity. J Hazard Mater 182: 18-26.
29. IFEN (2007) Les pesticides dans les eaux-données 2005. Les dossiers IFEN 9.
30. Kawai S, Uno B, Tomita M (1991) Determination of glyphosate and its major metabolite aminomethylphosphonic acid by high-performance liquid-chromatography after derivatization with para-toluenesulfonyl chloride. J Chromatogr 540: 411-415.
31. Kjelleberg S, Hermansson M (1984) Starvation-induced effects on bacterial surface characteristics. Appl Environ Microbiol 48: 497-503.
32. Kotsou M, Mari I, Lasaridi K, Chatzipavlidis I, Balis C, Kyriacou A (2004) The effect of olive oil mill wastewater (OMW) on soil microbial communities and suppressiveness against Rhizoctonia solani. Appl Soil Ecol 26: 113-121.
33. Kunito T, Saeki K, Oyaizu H, Matsumoto S (1999) Influences of copper forms on the toxicity to microorganisms in soils. Ecotoxicol Environ Saf 44: 174-181.
34. Lebeau T, Bagot D, Jezequel K, Fabre B (2002) Cadmium biosorption by free and immobilised microorganisms cultivated in a liquid soil extract medium: effect of Cd, pH and techniques of culture. Sci Total Environ 291: 73-83.
35. Lebeau T, Braud A, Jézéquel K (2008) Performance of bioaugmentation-assisted phytoextraction applied to metal contaminated soils: a review. Environ Pollut 153: 497-522.
36. Le Bissonnais Y, Gascuel-Odoux C (2000) L'érosion hydrique des sols cultivés en milieu tempéré.Sol: interface fragile, (Stengel P & Gelin S, eds.), pp. 222. Coédition INRA et Nathan, Paris.
37. Liebens J (2001) Heavy metal contamination of sediments in stormwater management systems: the effect of land use, particle size, and age. Environ Geol 41: 341-351.
38. Marugg JD, van Spanje M, Hoekstra WP, Schippers B, Weisbeek PJ (1985) Isolation and analysis of genes involved in siderophore biosynthesis in plant-growth-stimulating Pseudomonas putida WCS358. J Bacteriol 164: 563-570.
39. Matamoros V, Jaume Puigagut J, Joan Garcia J, Bayona JM (2007) Behavior of selected priority organic pollutants in horizontal subsurface flow constructed wetlands: a preliminary screening. Chemosphere 69: 1374-1380.
40. McGrath SP, Shen ZG, Zhao FJ (1997) Heavy metal uptake and chemical changes in the rhizosphere of Thlaspi caerulescens and Thlaspi ochroleucum grown in contaminated soils. Plant Soil 188: 153-159.
41. McKinlay RG, Kasperek K (1999) Obsevations on decontamination of herbicide-polluted water by marsh plant systems. Water Res 33: 505-511.
42. Mitchell C, Brodie J, White I (2005) Sediments, nutrients and pesticide residues in event flow conditions in streams of the Mackay Whitsunday Region, Australia. Mar Pollut Bull 1: 23-36.
43. Nacamulli C, Bevivino A, Dalmastri C, Tabacchioni S, Chiarini L (1997) Perturbation of maize rhizosphere microflora following seed bacterization with Burkholderia cepacia MCI 7. FEMS Microbiol Ecol 23: 183-193.
44. Obojska A, Lejczak B, Kubrak M (1999) Degradation of phosphonates by streptomycete isolates. Appl Microbiol Biotech 51: 872-876.
45. Peruzzo PJ, Porta AA, Roncoa AE (2008) Levels of glyphosate in surface waters, sediments and soils associated with direct sowing soybean cultivation in north pampasic region of Argentina. Environ Pollut 156: 61-66.
46. Rajkumar M, Ae N, Prasad MNV, Freitas H (2010) H Potential of siderophore-producing bacteria for improving heavy metal phytoextraction. Trends Biotechnol 28: 142-149.
47. Ribolzi O, Valles V, Gomez L, Voltz M (2002) Speciation and origin of particulate copper in runoff water from a Mediterranean vineyard catchment. Environ Pollut 117: 261-271.
48. Schröder P, Navarro-Aviñó JHA, Goldhirsh AG, DiGregorio S, Komives T, Langergraber G, Lenz A, Maestri E, Memon AR, Ranalli A, Sebastiani L, Smrcek S, Vanek T, Vuilleumier S, Wissing F (2007) Using phytoremediation technologies to upgrade waste water treatment in Europe. Environ Sci Pollut Res 14: 440-447.
49. Schulz R (2004) Field studies on exposure, effects, and risk mitigation of aquatic nonpoint-source insecticide pollution: a review. J Environ Qual 33: 419-448.
50. Schwyn B, Neilands JB (1987) Universal chemical assay for the detection and the determination of siderophores. Anal Biochem 160: 47-56.
51. Sleytr K, Tietz A, Langergraber G, Haberl R, Sessitsch A (2009) Diversity of abundant bacteria in subsurface vertical flow constructed wetlands. Ecol Eng 35: 1021-1025.
52. Stenström J, Svensson K, Johansson M (2001) Reversible transition between active and dormant microbial states in soil. FEMS Microbiol Ecol 36: 93-104.
53. Stottmeister U, Wiessner A, Kuschk P, Kappelmeyer U, Kastner M, Bederski O, Muller RA, Moormann H (2003) Effects of plants and microorganisms in constructed wetlands for wastewater treatment. Biotechnol Adv 22: 93-117.
54. Thioulouse J, Chessel D, Doledec S, Olivier JM (1997) ADE-4: a multivariate analysis and graphical display software. Stat Comput 7: 75-83.
55. Thompson I, van der Gast CJ, Ciric L, Singer AC (2005) Bioaugmentation for bioremediation: the challenge of strain selection: minireview. Environ Microbiol 7: 909-915.
56. Tixier C, Sancelme M, Aït-Aïssa S, Widehem P, Bonnemoy F, Cuer A, Truffaut N, Veschambre H (2002) Biotransformation of phenylurea herbicides by a soil bacterial strain, Arthrobacter sp. N2: structure, ecotoxicity and fate of diuron metabolite with soil fungi. Chemosphere 46: 519-526.
57. Travkin VM, Golovleva LA (2003) The degradation of 3, 4-dichloroaniline by Pseudomonas fluorescens strain 26-K. Microbiology 72: 240-243.
58. Tsui MTK, Chu LM (2003) Aquatic toxicity of glyphosate-based formulations: comparison between different organisms and the effects of environmental factors. Chemosphere 52: 1189-1197.
59. Turnbull GA, Cullington JE, Walker A, Morgan JAW (2001a) Identification and characterisation of a diuron-degrading bacterium. Biol Fertil Soils 33: 472-476.
60. Turnbull GA, Ousley M, Walker A, Shaw E, Morgan JAW (2001b) Degradation of substituted phenylurea herbicides by Arthrobacter globiformis strain D47 and characterization of a plasmid-associated hydrolase gene, puhA. Appl Environ Microbiol 67: 2270-2275.
61. Upchurch R, Chiu CY, Everett K, Dyszynski G, Coleman DC, Whitman WB (2008) Differences in the composition and diversity of bacterial communities from agricultural and forest soils. Soil Biol Biochem 40: 1294-1305.
62. USEPA (1996) Microwave assisted acid digestion of sediments, sludges, soils and oils, method 3051A. USEPA, Washington, DC.
63. van Elsas JD, Torsvik V, Hartmann A, Øvreås L, Jansson JK (2007) The bacteria and archaea in soil. Modern soil microbiology, 2nd edn. CRC, United States.
64. Vartapetian BB, Jackson MB (1997) Plant adaptations to anaerobic stress. Ann Bot 79: 3-20.
65. Vauterin L, Vauterin P (1992) Computer-aided objective comparison of electrophoresis patterns for grouping and identification of microorganisms. Eur Microbiol 1: 37-41.
66. Verstraete W, Wittelbolle L, Heylen K, Vanparys B, de Vos P, van de Wiele T, Boon N (2007) Microbial resource management: the road to go for environmental biotechnology. Eng Life Sci 7: 117-126.
67. Viti C, Quaranta D, De Philippis R, Corti G, Agnelli A, Cuniglio R, Giovannetti L (2008) Characterizing cultivable soil microbial communities from copper fungicide-amended olive orchard and vineyard soils. World J Microbiol Biotechnol 24: 309-318.
68. Vroumsia T, Steiman R, Seigle-Murandi F, Benoit-Guyod JL, Khadrani A (1996) Biodegradation of three substituted phenylurea herbicides (chlortoluron, diuron, and isoproturon) by soft fungi. A comparative study. Chemosphere 33: 2045-2056.
69. Vymazal J, Kröpfelová L, Svehla J, Chrastný V, Stíchová J (2009) Trace elements in Phragmites australis growing in constructed wetlands for treatment of municipal wastewater. Ecol Eng 35: 303-309.
70. Widehem P, Aït-Aïssa S, Tixier C, Sancelme M, Veschambre H, Truffaut N (2002) Isolation, characterization and diuron transformation capacities of a bacterial strain Arthrobacter sp. N2. Chemosphere 46: 527-534.
71. Wikström P, Andersson AC, Forsman M (1999) Biomonitoring complex microbial communities using random amplified polymorphic DNA and principle component analysis. FEMS Microbiol Lett 28: 131-139.
72. You IS, Bartha R (1982) Metabolism of 3, 4-dichloroaniline by Pseudomonas putida. J Agr Food Chem 30: 274-277.
73. Zhang G, Niu F, Ma X, Liu W, Dong M, Feng H, An L, Cheng G (2007) Phylogenetic diversity of bacteria isolates from the Qinghai-Tibet Plateau permafrost region. Can J Microbiol 53: 1000-1010.