Functional interaction of the circadian clock and UV RESISTANCE LOCUS 8-controlled UV-B signaling pathways in Arabidopsis thaliana

Plant Journal

Volumn 67, Issue 1, 2011, Pages 37-48

  Fehér, Balázs ^a   Kozma Bognár, Lászlõ ^a   Kevei, Éva ^a,e   Hajdu, Anita ^a   Binkert, Melanie ^b,f   Davis, Seth Jon ^c   Schäfer, Eberhard ^b   Ulm, Roman ^b   Nagy, Ferenc ^a,b,d  

^a INSTITUTE OF EXPERIMENTAL MEDICINE   (Hungary)

^b UNIVERSITY OF FREIBURG   (Germany)

^c MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH   (Germany)

^d UNIVERSITY OF EDINBURGH   (United Kingdom)

^e UNIVERSITY OF COLOGNE   (Germany)

^f UNIVERSITY OF GENEVA   (Switzerland)

Author keywords

circadian clock; circadian gating; entrainment; gene expression; ultraviolet B light; UV B tolerance

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; CIRCADIAN CLOCK; CIRCADIAN GATING; EARLY-FLOWERING; FUNCTIONAL INTERACTION; GENE INDUCTION; LOW-INTENSITY; MUTUAL INTERACTION; PHYSIOLOGICAL PROCESS; SAVING RESOURCES; SIGNALING PATHWAYS; TEMPORAL RESTRICTIONS; TRANSCRIPTIONAL ACTIVATIONS; ULTRAVIOLET-B LIGHT; UV RESISTANCE; UV-B TOLERANCE; UVB RADIATION; VISIBLE LIGHT;

GENE EXPRESSION;

CLOCKS;

ARABIDOPSIS PROTEIN; BASIC LEUCINE ZIPPER TRANSCRIPTION FACTOR; CARRIER PROTEIN; CCA1 PROTEIN, ARABIDOPSIS; CONSTITUTIVE PHOTOMORPHOGENIC 1 PROTEIN, ARABIDOPSIS; EARLY FLOWERING 4 PROTEIN, ARABIDOPSIS; ELF3 PROTEIN, ARABIDOPSIS; HY5 PROTEIN, ARABIDOPSIS; HYH PROTEIN, ARABIDOPSIS; NONHISTONE PROTEIN; NUCLEAR PROTEIN; TRANSCRIPTION FACTOR; UVR8 PROTEIN, ARABIDOPSIS;

ARABIDOPSIS; ARTICLE; CIRCADIAN RHYTHM; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MUTATION; PHOTOPERIODICITY; PHYSIOLOGICAL STRESS; PHYSIOLOGY; RADIATION EXPOSURE; SIGNAL TRANSDUCTION; TIME; TRANSCRIPTION INITIATION; ULTRAVIOLET RADIATION;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTORS; CARRIER PROTEINS; CHROMOSOMAL PROTEINS, NON-HISTONE; CIRCADIAN CLOCKS; CIRCADIAN RHYTHM; GENE EXPRESSION REGULATION, PLANT; MUTATION; NUCLEAR PROTEINS; PHOTOPERIOD; SIGNAL TRANSDUCTION; STRESS, PHYSIOLOGICAL; TIME FACTORS; TRANSCRIPTION FACTORS; TRANSCRIPTIONAL ACTIVATION; ULTRAVIOLET RAYS;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 79959747572     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2011.04573.x     Document Type: Article

References (53)

1. Alabadi, D., Oyama, T., Yanovsky, M.J., Harmon, F.G., Mas, P., and, Kay, S.A., (2001) Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock. Science, 293, 880-883. (Pubitemid 32743980)
2. Boyko, A., Molinier, J., Chatter, W., Laroche, A., and, Kovalchuk, I., (2010) Acute but not chronic exposure to abiotic stress results in transient reduction of expression levels of the transgene driven by the 35S promoter. N. Biotechnol. 27, 70-77.
3. Brown, B.A., and, Jenkins, G.I., (2008) UV-B signaling pathways with different fluence-rate response profiles are distinguished in mature Arabidopsis leaf tissue by requirement for UVR8, HY5, and HYH. Plant Physiol. 146, 576-588. (Pubitemid 351230786)
4. Brown, B.A., Cloix, C., Jiang, G.H., Kaiserli, E., Herzyk, P., Kliebenstein, D.J., and, Jenkins, G.I., (2005) A UV-B-specific signaling component orchestrates plant UV protection. Proc. Natl Acad. Sci. USA, 102, 18225-18230. (Pubitemid 41798529)
5. Clough, S.J., and, Bent, A.F., (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743.
6. Covington, M.F., Panda, S., Liu, X.L., Strayer, C.A., Wagner, D.R., and, Kay, S.A., (2001) ELF3 modulates resetting of the circadian clock in Arabidopsis. Plant Cell, 13, 1305-1315. (Pubitemid 32592905)
7. Covington, M.F., Maloof, J.N., Straume, M., Kay, S.A., and, Harmer, S.L., (2008) Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development. Genome Biol. 9, R130.
8. David, K.M., Armbruster, U., Tama, N., and, Putterill, J., (2006) Arabidopsis GIGANTEA protein is post-transcriptionally regulated by light and dark. FEBS Lett. 580, 1193-1197. (Pubitemid 43221978)
9. Devlin, P.F., and, Kay, S.A., (2000) Cryptochromes are required for phytochrome signaling to the circadian clock but not for rhythmicity. Plant Cell, 12, 2499-2510.
10. Devlin, P.F., and, Kay, S.A., (2001) Circadian photoperception. Annu. Rev. Physiol. 63, 677-694. (Pubitemid 32304334)
11. Dievart, A., and, Clark, S.E., (2003) Using mutant alleles to determine the structure and function of leucine-rich repeat receptor-like kinases. Curr. Opin. Plant Biol. 6, 507-516. (Pubitemid 37195754)
12. Dodd, A.N., Salathia, N., Hall, A., Kevei, E., Toth, R., Nagy, F., Hibberd, J.M., Millar, A.J., and, Webb, A.A., (2005) Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage. Science, 309, 630-633. (Pubitemid 41033650)
13. Doyle, M.R., Davis, S.J., Bastow, R.M., McWatters, H.G., Kozma-Bognar, L., Nagy, F., Millar, A.J., and, Amasino, R.M., (2002) The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana. Nature, 419, 74-77. (Pubitemid 34987872)
14. Edwards, K.D., Anderson, P.E., Hall, A., Salathia, N.S., Locke, J.C., Lynn, J.R., Straume, M., Smith, J.Q., and, Millar, A.J., (2006) FLOWERING LOCUS C mediates natural variation in the high-temperature response of the Arabidopsis circadian clock. Plant Cell, 18, 639-650. (Pubitemid 43956167)
15. Endo, M., Mochizuki, N., Suzuki, T., and, Nagatani, A., (2007) CRYPTOCHROME2 in vascular bundles regulates flowering in Arabidopsis. Plant Cell, 19, 84-93. (Pubitemid 46852703)
16. Farré, E.M., and, Kay, S.A., (2007) PRR7 protein levels are regulated by light and the circadian clock in Arabidopsis. Plant J. 52, 548-560. (Pubitemid 47628570)
17. Farre, E.M., Harmer, S.L., Harmon, F.G., Yanovsky, M.J., and, Kay, S.A., (2005) Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock. Curr. Biol. 15, 47-54. (Pubitemid 40084701)
18. Favory, J.J., Stec, A., Gruber, H., et al. (2009) Interaction of COP1 and UVR8 regulates UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis. EMBO J. 28, 591-601.
19. Harmer, S.L., (2009) The circadian system in higher plants. Annu. Rev. Plant Biol. 60, 357-377.
20. Hicks, K.A., Albertson, T.M., and, Wagner, D.R., (2001) EARLY FLOWERING3 encodes a novel protein that regulates circadian clock function and flowering in Arabidopsis. Plant Cell, 13, 1281-1292. (Pubitemid 32592903)
21. Holm, M., Ma, L.G., Qu, L.J., and, Deng, X.W., (2002) Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in Arabidopsis. Genes Dev. 16, 1247-1259. (Pubitemid 34553105)
22. Hotta, C.T., Gardner, M.J., Hubbard, K.E., Baek, S.J., Dalchau, N., Suhita, D., Dodd, A.N., and, Webb, A.A., (2007) Modulation of environmental responses of plants by circadian clocks. Plant Cell Environ. 30, 333-349. (Pubitemid 46184434)
23. Ikeda, M., and, Ohme-Takagi, M., (2009) A novel group of transcriptional repressors in Arabidopsis. Plant Cell Physiol. 50, 970-975.
24. Inskeep, W.P., and, Bloom, P.R., (1985) Extinction coefficients of chlorophyll a and B in n,n-dimethylformamide and 80% acetone. Plant Physiol. 77, 483-485.
25. Ito, S., Matsushika, A., Yamada, H., Sato, S., Kato, T., Tabata, S., Yamashino, T., and, Mizuno, T., (2003) Characterization of the APRR9 pseudo-response regulator belonging to the APRR1/TOC1 quintet in Arabidopsis thaliana. Plant Cell Physiol. 44, 1237-1245. (Pubitemid 37519083)
26. Ito, S., Nakamichi, N., Kiba, T., Yamashino, T., and, Mizuno, T., (2007) Rhythmic and light-inducible appearance of clock-associated pseudo-response regulator protein PRR9 through programmed degradation in the dark in Arabidopsis thaliana. Plant Cell Physiol. 48, 1644-1651. (Pubitemid 350135507)
27. Jansen, M.A.K., Gaba, V., and, Greenberg, B.M., (1998) Higher plants and UV-B radiation: balancing damage, repair and acclimation (vol 3, pg 131, 1998). Trends Plant Sci. 3, 243-243.
28. Kevei, E., Gyula, P., Hall, A., et al. (2006) Forward genetic analysis of the circadian clock separates the multiple functions of ZEITLUPE. Plant Physiol. 140, 933-945. (Pubitemid 43956247)
29. Kevei, E., Gyula, P., Feher, B., et al. (2007) Arabidopsis thaliana circadian clock is regulated by the small GTPase LIP1. Curr. Biol. 17, 1456-1464. (Pubitemid 47333158)
30. Kikis, E.A., Khanna, R., and, Quail, P.H., (2005) ELF4 is a phytochrome-regulated component of a negative-feedback loop involving the central oscillator components CCA1 and LHY. Plant J. 44, 300-313.
31. Kim, J.Y., Song, H.R., Taylor, B.L., and, Carré, I.A., (2003) Light-regulated translation mediates gated induction of the Arabidopsis clock protein LHY. EMBO J. 22, 935-944. (Pubitemid 36227795)
32. Kim, W.Y., Hicks, K.A., and, Somers, D.E., (2005) Independent roles for EARLY FLOWERING 3 and ZEITLUPE in the control of circadian timing, hypocotyl length, and flowering time. Plant Physiol. 139, 1557-1569. (Pubitemid 43786854)
33. Kozma-Bognar, L., and, Kaldi, K., (2008) Synchronization of the fungal and the plant circadian clock by light. Chembiochem, 9, 2565-2573.
34. Lee, J., He, K., Stolc, V., Lee, H., Figueroa, P., Gao, Y., Tongprasit, W., Zhao, H., Lee, I., and, Deng, X.W., (2007) Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development. Plant Cell, 19, 731-749. (Pubitemid 46953224)
35. Locke, J.C., Southern, M.M., Kozma-Bognar, L., Hibberd, V., Brown, P.E., Turner, M.S., and, Millar, A.J., (2005) Extension of a genetic network model by iterative experimentation and mathematical analysis. Mol. Syst. Biol. 1, 2005.0013.
36. Locke, J.C., Kozma-Bognar, L., Gould, P.D., Feher, B., Kevei, E., Nagy, F., Turner, M.S., Hall, A., and, Millar, A.J., (2006) Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana. Mol. Syst. Biol. 2, 59.
37. Makino, S., Matsushika, A., Kojima, M., Oda, Y., and, Mizuno, T., (2001) Light response of the circadian waves of the APRR1/TOC1 quintet: when does the quintet start singing rhythmically in Arabidopsis? Plant Cell Physiol. 42, 334-339. (Pubitemid 32320203)
38. Más, P., Kim, W.Y., Somers, D.E., and, Kay, S.A., (2003) Targeted degradation of TOC1 by ZTL modulates circadian function in Arabidopsis thaliana. Nature, 426, 567-570. (Pubitemid 37522643)
39. Matsushika, A., Imamura, A., Yamashino, T., and, Mizuno, T., (2002) Aberrant expression of the light-inducible and circadian-regulated APRR9 gene belonging to the circadian-associated APRR1/TOC1 quintet results in the phenotype of early flowering in Arabidopsis thaliana. Plant Cell Physiol. 43, 833-843. (Pubitemid 35008631)
40. McNellis, T.W., von Arnim, A.G., Araki, T., Komeda, Y., Misera, S., and, Deng, X.W., (1994) Genetic and molecular analysis of an allelic series of cop1 mutants suggests functional roles for the multiple protein domains. Plant Cell, 6, 487-500.
41. Millar, A.J., and, Kay, S.A., (1996) Integration of circadian and phototransduction pathways in the network controlling CAB gene transcription in Arabidopsis. Proc. Natl Acad. Sci. USA, 93, 15491-15496. (Pubitemid 27009626)
42. Mizoguchi, T., Wright, L., Fujiwara, S., et al. (2005) Distinct roles of GIGANTEA in promoting flowering and regulating circadian rhythms in Arabidopsis. Plant Cell, 17, 2255-2270. (Pubitemid 41672945)
43. Oravecz, A., Baumann, A., Mate, Z., Brzezinska, A., Molinier, J., Oakeley, E.J., Adam, E., Schafer, E., Nagy, F., and, Ulm, R., (2006) CONSTITUTIVELY PHOTOMORPHOGENIC1 is required for the UV-B response in Arabidopsis. Plant Cell, 18, 1975-1990. (Pubitemid 44260191)
44. Somers, D.E., Devlin, P.F., and, Kay, S.A., (1998) Phytochromes and cryptochromes in the entrainment of the Arabidopsis circadian clock. Science, 282, 1488-1490. (Pubitemid 28538610)
45. Stracke, R., Favory, J.J., Gruber, H., Bartelniewoehner, L., Bartels, S., Binkert, M., Funk, M., Weisshaar, B., and, Ulm, R., (2010) The Arabidopsis bZIP transcription factor HY5 regulates expression of the PFG1/MYB12 gene in response to light and ultraviolet-B radiation. Plant Cell Environ. 33, 88-103.
46. Tepperman, J.M., Zhu, T., Chang, H.S., Wang, X., and, Quail, P.H., (2001) Multiple transcription-factor genes are early targets of phytochrome A signaling. Proc. Natl Acad. Sci. USA, 98, 9437-9442. (Pubitemid 32743935)
47. Thines, B., and, Harmon, F.G., (2010) Ambient temperature response establishes ELF3 as a required component of the core Arabidopsis circadian clock. Proc. Natl Acad. Sci. USA, 107, 3257-3262.
48. Toth, R., Kevei, E., Hall, A., Millar, A.J., Nagy, F., and, Kozma-Bognar, L., (2001) Circadian clock-regulated expression of phytochrome and cryptochrome genes in Arabidopsis. Plant Physiol. 127, 1607-1616. (Pubitemid 34050029)
49. Ulm, R., Baumann, A., Oravecz, A., Mate, Z., Adam, E., Oakeley, E.J., Schafer, E., and, Nagy, F., (2004) Genome-wide analysis of gene expression reveals function of the bZIP transcription factor HY5 in the UV-B response of Arabidopsis. Proc. Natl Acad. Sci. USA, 101, 1397-1402. (Pubitemid 38182700)
50. Wang, Z.Y., and, Tobin, E.M., (1998) Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression. Cell, 93, 1207-1217. (Pubitemid 28307425)
51. Wang, Z.Y., Kenigsbuch, D., Sun, L., Harel, E., Ong, M.S., and, Tobin, E.M., (1997) A Myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene. Plant Cell, 9, 491-507. (Pubitemid 27218748)
52. Yakir, E., Hilman, D., Hassidim, M., and, Green, R.M., (2007) CIRCADIAN CLOCK ASSOCIATED1 transcript stability and the entrainment of the circadian clock in Arabidopsis. Plant Physiol. 145, 925-932. (Pubitemid 350127629)
53. Yu, J.W., Rubio, V., Lee, N.Y., et al. (2008) COP1 and ELF3 control circadian function and photoperiodic flowering by regulating GI stability. Mol. Cell, 32, 617-630.