Unmasking low-abundance peptides from human blood plasma and serum samples by a simple and robust two-step precipitation/immunoaffinity enrichment method

Electrophoresis

Volumn 32, Issue 13, 2011, Pages 1706-1714

  Halfinger, Bernhard ^a   Sarg, Bettina ^a   Amann, Arno ^a   Hammerer Lercher, Angelika ^a   Lindner, Herbert H ^a  

^a INNSBRUCK MEDICAL UNIVERSITY   (Austria)

Author keywords

Liquid liquid precipitation; NT proBNP; Protein depletion; Tandem mass spectrometry; Thermal precipitation

Indexed keywords

ANTIGEN-ANTIBODY REACTIONS; BIOMARKERS; COST EFFECTIVENESS; DIAGNOSIS; MASS SPECTROMETRY; PLASMA (HUMAN);

DEPLETION TECHNIQUE; HUMAN BLOOD PLASMAS; LIQUID-LIQUIDS; LIQUID/LIQUID PRECIPITATION; NT-PROBNP; PROTEIN DEPLETIONS; TANDEM MASS SPECTROMETRY; TANDEM-MASS SPECTROMETRY; THERMAL; THERMAL PRECIPITATION;

PEPTIDES;

ALBUMIN; AMINO TERMINAL PRO BRAIN NATRIURETIC PEPTIDE; BIOLOGICAL MARKER; IMMUNOGLOBULIN; PEPTIDES AND PROTEINS;

ARTICLE; CHEMOLUMINESCENCE; CONTROLLED STUDY; ELECTROSPRAY MASS SPECTROMETRY; HEART FAILURE; HUMAN; IMMUNOAFFINITY CHROMATOGRAPHY; LIQUID CHROMATOGRAPHY; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRECIPITATION; PROTEIN ANALYSIS; PROTEIN BLOOD LEVEL; PROTEIN DEPLETION; PROTEIN EXPRESSION; PROTEIN ISOLATION; PROTEOMICS; SERUM; TANDEM MASS SPECTROMETRY; TWO STEP LIQUID LIQUID PRECIPITATION;

EID: 79959713093     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.201100069     Document Type: Article

References (29)

1. Anderson, N. L., Clin. Chem. 2010, 56, 177-185.
2. Zolg, J. W., Langen, H., Mol. Cell. Proteomics 2004, 3, 345-354.
3. Anderson, N. L., Anderson, N. G., Mol. Cell. Proteomics 2002, 1, 845-867.
4. Plavina, T., Wakshull, E., Hancock, W. S., Hincapie, M., J. Proteome Res. 2007, 6, 662-671.
5. Nilsson, T., Mann, M., Aebersold, R., Yates, J. R., 3rd, Bairoch, A., Bergeron, J. J., Nat. Methods 2010, 7, 681-685.
6. Ahmed, N., Barker, G., Oliva, K., Garfin, D., Talmadge, K., Georgiou, H., Quinn, M., Rice, G., Proteomics 2003, 3, 1980-1987.
7. Camerini, S., Polci, M. L., Restuccia, U., Usuelli, V., Malgaroli, A., Bachi, A., J. Proteome Res. 2007, 6, 3224-3231.
8. Colantonio, D. A., Dunkinson, C., Bovenkamp, D. E., Van Eyk, J. E., Proteomics 2005, 5, 3831-3835.
9. Zellner, M., Winkler, W., Hayden, H., Diestinger, M., Eliasen, M., Gesslbauer, B., Miller, I., Chang, M., Kungl, A., Roth, E., Oehler, R., Electrophoresis 2005, 26, 2481-2489.
10. Polaskova, V., Kapur, A., Khan, A., Molloy, M. P., Baker, M. S., Electrophoresis 2010, 31, 471-482.
11. Sennels, L., Salek, M., Lomas, L., Boschetti, E., Righetti, P. G., Rappsilber, J., J. Proteome Res. 2007, 6, 4055-4062.
12. Poetz, O., Hoeppe, S., Templin, M. F., Stoll, D., Joos, T. O., Proteomics 2009, 9, 1518-1523.
13. Jmeian, Y., El Rassi, Z., Electrophoresis 2009, 30, 249-261.
14. Gerber, S. A., Rush, J., Stemman, O., Kirschner, M. W., Gygi, S. P., Proc. Natl. Acad. Sci. USA 2003, 100, 6940-6945.
15. Ahn, Y. H., Lee, J. Y., Lee, J. Y., Kim, Y. S., Ko, J. H., Yoo, J. S., J. Proteome Res. 2009, 8, 4216-4224.
16. Kuhn, E., Addona, T., Keshishian, H., Burgess, M., Mani, D. R., Lee, R. T., Sabatine, M. S., Gerszten, R. E., Carr, S. A., Clin. Chem. 2009, 55, 1108-1117.
17. Anderson, N. L., Anderson, N. G., Haines, L. R., Hardie, D. B., Olafson, R. W., Pearson, T. W., J. Proteome Res. 2004, 3, 235-244.
18. Kiyonami, R., Schoen, A., Prakash, A., Peterman, S., Zabrouskov, V., Picotti, P., Aebersold, R., Huhmer, A., Domon, B., Mol. Cell. Proteomics 2010, 10, M110 002931.
19. Williams, D., Ackloo, S., Zhu, P., Bowden, P., Evans, K. R., Addison, C. L., Lock, C., Marshall, J. G., Anal. Bioanal. Chem. 2010, 396, 1223-1247.
20. Gundry, R. L., Van Eyk, J. E., Clin. Chem. 2007, 53, 1181-1182.
21. Chen, Y. Y., Lin, S. Y., Yeh, Y. Y., Hsiao, H. H., Wu, C. Y., Chen, S. T., Wang, A. H., Electrophoresis 2005, 26, 2117-2127.
22. Hammerer-Lercher, A., Halfinger, B., Sarg, B., Mair, J., Puschendorf, B., Griesmacher, A., Guzman, N. A., Lindner, H. H., Clin. Chem. 2008, 54, 858-865.
23. Fu, Q., Garnham, C. P., Elliott, S. T., Bovenkamp, D. E., Van Eyk, J. E., Proteomics 2005, 5, 2656-2664.
24. Grunert, T., Marchetti-Deschmann, M., Miller, I., Muller, M., Allmaier, G., Electrophoresis 2008, 29, 4332-4340.
25. Gundry, R. L., Fu, Q., Jelinek, C. A., Van Eyk, J. E., Cotter, R. J., Proteomics Clin. Appl. 2007, 1, 73-88.
26. Hawkridge, A. M., Muddiman, D. C., Hebulein, D. M., Cataliotti, A., Burnett, J. C., Jr., Clin. Chem. 2008, 54, 933-934.
27. Tu, C., Rudnick, P. A., Martinez, M. Y., Cheek, K. L., Stein, S. E., Slebos, R. J., Liebler, D. C., J. Proteome Res. 2010, 9, 4982-4991.
28. Ishihama, Y., Oda, Y., Tabata, T., Sato, T., Nagasu, T., Rappsilber, J., Mann, M., Mol. Cell. Proteomics 2005, 4, 1265-1272.
29. Shuford, C. M., Hawkridge, A. M., Burnett, J. C., Jr., Muddiman, D. C., Anal. Chem. 2010, 82, 10179-10185.