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Volumn 77, Issue 4, 2003, Pages 295-309

Cryptic species in cyanobacterial systematics: A case study of Phormidium retzii (Oscillatoriales) using RAPD molecular markers and 16S rDNA sequence data

Author keywords

Cryptic species; Cyanobacteria; Phormidium retzii; Phylogeny; RAPD; rDNA

Indexed keywords

CRYPSIS; CYANOBACTERIUM; DNA; GENETIC MARKER; GENETIC VARIATION; PHYLOGENY;

EID: 0345598047     PISSN: 03043770     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquabot.2003.08.005     Document Type: Article
Times cited : (74)

References (59)
  • 1
    • 0000026049 scopus 로고
    • Modern approach to the classification system of the cyanophytes. 3. Oscillatoriales
    • Anagnostidis, K., Komárek, J., 1988. Modern approach to the classification system of the cyanophytes. 3. Oscillatoriales. Arch. für Hydrobiol. Suppl. 80, 327-472.
    • (1988) Arch. für Hydrobiol. Suppl. , vol.80 , pp. 327-472
    • Anagnostidis, K.1    Komárek, J.2
  • 2
    • 0344579871 scopus 로고
    • Applied Biosystems, Foster City, CA
    • Applied Biosystems, 1992. SeqEd ver. 1.0.3. Applied Biosystems, Foster City, CA.
    • (1992) SeqEd Ver. 1.0.3
  • 3
    • 0032891849 scopus 로고    scopus 로고
    • Genetic, morphological, and toxicological variation among globally distributed strains of Nodularia (Cyanobacteria)
    • Bolch, C.J.S., Orr, P.T., Jones, G.J., Blackburn, S.I., 1999. Genetic, morphological, and toxicological variation among globally distributed strains of Nodularia (Cyanobacteria). J. Phycol. 35, 339-355.
    • (1999) J. Phycol. , vol.35 , pp. 339-355
    • Bolch, C.J.S.1    Orr, P.T.2    Jones, G.J.3    Blackburn, S.I.4
  • 4
    • 0036926698 scopus 로고    scopus 로고
    • Phylogeny and genetic variance in terrestrial Microcoleus (Cyanophyceae) species based on sequence analysis of the 16S rRNA gene and associated 16S-23S ITS region
    • Boyer, S.L., Johansen, J.R., Flechtner, V.R., Howard, G.L., 2002. Phylogeny and genetic variance in terrestrial Microcoleus (Cyanophyceae) species based on sequence analysis of the 16S rRNA gene and associated 16S-23S ITS region. J. Phycol. 38, 1222-1235.
    • (2002) J. Phycol. , vol.38 , pp. 1222-1235
    • Boyer, S.L.1    Johansen, J.R.2    Flechtner, V.R.3    Howard, G.L.4
  • 6
    • 36448932155 scopus 로고    scopus 로고
    • Cyanophyceae from lotic ecosystems of São Paulo State, southeastern Brazil
    • Branco, L.H.Z., Necchi Jr., O., Branco, C.C.Z., 1999. Cyanophyceae from lotic ecosystems of São Paulo State, southeastern Brazil. Arch. für Hydrobiol. Suppl. 129, 63-87.
    • (1999) Arch. für Hydrobiol. Suppl. , vol.129 , pp. 63-87
    • Branco, L.H.Z.1    Necchi Jr., O.2    Branco, C.C.Z.3
  • 7
    • 84989617497 scopus 로고
    • Species usage, concept and evolution in the cyanobacteria (blue-green algae)
    • Castenholz, R.W., 1992. Species usage, concept and evolution in the cyanobacteria (blue-green algae). J. Phycol. 28, 737-745.
    • (1992) J. Phycol. , vol.28 , pp. 737-745
    • Castenholz, R.W.1
  • 9
    • 0000102730 scopus 로고
    • Oxygenic photosynthetic bacteria. Group 1. Cyanobacteria
    • Staley, J.T., Bryant, M.P., Pfenning, N., Holt, J.H. (Eds.), Williams and Wilkins, Baltimore
    • Castenholz, R.W., Waterbury, J.B., 1989. Oxygenic photosynthetic bacteria. Group 1. Cyanobacteria. In: Staley, J.T., Bryant, M.P., Pfenning, N., Holt, J.H. (Eds.), Bergey's Manual of Systematic Bacteriology, vol. 3. Oxygenic Photosynthetic Bacteria. Williams and Wilkins, Baltimore, pp. 1710-1728.
    • (1989) Bergey's Manual of Systematic Bacteriology, Vol. 3. Oxygenic Photosynthetic Bacteria , vol.3 , pp. 1710-1728
    • Castenholz, R.W.1    Waterbury, J.B.2
  • 10
    • 0028173732 scopus 로고
    • The effects of rare but promiscuous genetic exchange on evolutionary divergence in prokaryotes
    • Cohan, F.M., 1994. The effects of rare but promiscuous genetic exchange on evolutionary divergence in prokaryotes. Am. Nat. 143, 965-986.
    • (1994) Am. Nat. , vol.143 , pp. 965-986
    • Cohan, F.M.1
  • 11
    • 0035527404 scopus 로고    scopus 로고
    • Bacterial species and speciation
    • Cohan, F.M., 2001. Bacterial species and speciation. Syst. Biol. 50, 513-524.
    • (2001) Syst. Biol. , vol.50 , pp. 513-524
    • Cohan, F.M.1
  • 12
    • 0004190347 scopus 로고
    • Indian Council of Agricultural Research, New Delhi
    • Desikachary, T.V., 1959. Cyanophyta. Indian Council of Agricultural Research, New Delhi.
    • (1959) Cyanophyta
    • Desikachary, T.V.1
  • 13
    • 0242310474 scopus 로고
    • Academy of Natural Sciences of Philadelphia, Philadelphia, PA
    • Drouet, F., 1968. Revision of the Oscillatoriaceae. Academy of Natural Sciences of Philadelphia, Philadelphia, PA.
    • (1968) Revision of the Oscillatoriaceae
    • Drouet, F.1
  • 15
    • 0036321215 scopus 로고    scopus 로고
    • Spirirestis rafaelensis gen. et sp. nov. (Cyanophyceae), a new cyanobacterial genus from arid soils
    • Flechtner, V.R., Boyer, S.L., Johansen, J.R., DeNoble, M.L., 2002. Spirirestis rafaelensis gen. et sp. nov. (Cyanophyceae), a new cyanobacterial genus from arid soils. Nova Hedwigia 74, 1-2
    • (2002) Nova Hedwigia , vol.74 , pp. 1-2
    • Flechtner, V.R.1    Boyer, S.L.2    Johansen, J.R.3    DeNoble, M.L.4
  • 16
    • 0026585263 scopus 로고
    • How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
    • Fox, G.E., Wisotzkey, J.D., Jurtshuk Jr., P., 1992. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42, 166-170.
    • (1992) Int. J. Syst. Bacteriol. , vol.42 , pp. 166-170
    • Fox, G.E.1    Wisotzkey, J.D.2    Jurtshuk Jr., P.3
  • 17
    • 0029786916 scopus 로고    scopus 로고
    • Phenotypic and phylogenetic analyses show Microcoleus chthonoplastes to be a cosmopolitan cyanobacterium
    • Garcia-Pichel, F., Prufert-Bebout, L., Muyer, G., 1996. Phenotypic and phylogenetic analyses show Microcoleus chthonoplastes to be a cosmopolitan cyanobacterium. Appl. Environ. Microbiol. 62, 3284-3291.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 3284-3291
    • Garcia-Pichel, F.1    Prufert-Bebout, L.2    Muyer, G.3
  • 18
    • 0003365715 scopus 로고
    • Cyanophyceae
    • Rabenhorst, L. (Ed.), Akademishe Verlagsgesellschaft, Leipzig
    • Geitler, L., 1932. Cyanophyceae. In: Rabenhorst, L. (Ed.), Kryptogamen-flora von Deutschland, Österreich und der Schweiz, vol. 14. Akademishe Verlagsgesellschaft, Leipzig, pp. 1-1196.
    • (1932) Kryptogamen-flora von Deutschland, Österreich und der Schweiz , vol.14 , pp. 1-1196
    • Geitler, L.1
  • 19
    • 0001368373 scopus 로고
    • Etude comparative de la distribution florale dans une portion des Alpes et des
    • Jaccard, P., 1901. Etude comparative de la distribution florale dans une portion des Alpes et des. J. Bull. Soc. Vaud. Sci. Nat. 37, 547-579.
    • (1901) J. Bull. Soc. Vaud. Sci. Nat. , vol.37 , pp. 547-579
    • Jaccard, P.1
  • 20
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide substitutions
    • Kimura, M., 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide substitutions. J. Mol. Evol. 16, 111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 21
    • 0033827474 scopus 로고    scopus 로고
    • Freshwater diatom biogeography
    • Kociolek, J.P., Spaulding, S.A., 2000. Freshwater diatom biogeography. Nova Hedw. 71, 223-241.
    • (2000) Nova Hedw. , vol.71 , pp. 223-241
    • Kociolek, J.P.1    Spaulding, S.A.2
  • 22
    • 4243458578 scopus 로고
    • Do all cyanophytes have a cosmopolitan distribution? Survey of the freshwater cyanophyte flora of Cuba
    • Komárek, J., 1985. Do all cyanophytes have a cosmopolitan distribution? Survey of the freshwater cyanophyte flora of Cuba. Arch. für Hydrobiol. Suppl. 71, 359-386.
    • (1985) Arch. für Hydrobiol. Suppl. , vol.71 , pp. 359-386
    • Komárek, J.1
  • 23
    • 0004817394 scopus 로고    scopus 로고
    • Diversity of cyanoprokaryotes (Cyanobacteria) of King George Island, maritime Antarctica - A survey
    • Komárek, J., 1999. Diversity of cyanoprokaryotes (Cyanobacteria) of King George Island, maritime Antarctica - a survey. Arch. für Hydrobiol. Suppl. 129, 181-193.
    • (1999) Arch. für Hydrobiol. Suppl. , vol.129 , pp. 181-193
    • Komárek, J.1
  • 24
    • 0003356585 scopus 로고    scopus 로고
    • Cyanoprokaryota 1. Teil: Chroococcales
    • Ettl, H., Gerloff, J., Heynig, H., Mollenhauer, D. (Eds.), G. Fischer, Stuttgart
    • Komárek, J., Anagnostidis, K., 1999. Cyanoprokaryota 1. Teil: Chroococcales. In: Ettl, H., Gerloff, J., Heynig, H., Mollenhauer, D. (Eds.), Süsswasserflora von Mitteleuropa, vol. 19/1. G. Fischer, Stuttgart, pp. 1-548.
    • (1999) Süsswasserflora von Mitteleuropa , vol.19 , Issue.1 , pp. 1-548
    • Komárek, J.1    Anagnostidis, K.2
  • 28
    • 0014054519 scopus 로고
    • The detection of disease clustering and a generalized regression approach
    • Mantel, N., 1967. The detection of disease clustering and a generalized regression approach. Cancer Res. 27, 209-220.
    • (1967) Cancer Res. , vol.27 , pp. 209-220
    • Mantel, N.1
  • 29
    • 0001904414 scopus 로고    scopus 로고
    • The phylogenetic species concept (sensu Mishler and Theriot): Monophyly, apomorphy and phylogenetic species concepts
    • Wheeler, Q.D., Meier, R. (Eds.), Columbia University Press, New York
    • Mishler, B.D., Theriot, E.C., 2000. The phylogenetic species concept (sensu Mishler and Theriot): monophyly, apomorphy and phylogenetic species concepts. In: Wheeler, Q.D., Meier, R. (Eds.), Species Concepts and Phylogenetic Theory, A Debate. Columbia University Press, New York, pp. 44-54.
    • (2000) Species Concepts and Phylogenetic Theory, A Debate , pp. 44-54
    • Mishler, B.D.1    Theriot, E.C.2
  • 30
    • 0032482462 scopus 로고    scopus 로고
    • Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes
    • Moore, L.R., Rocap, G., Chisholm, S.W., 1998. Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes. Nature 393, 464-467.
    • (1998) Nature , vol.393 , pp. 464-467
    • Moore, L.R.1    Rocap, G.2    Chisholm, S.W.3
  • 31
    • 0028976712 scopus 로고
    • Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities
    • Mullins, T., Britschgi, T.B., Krest, R.L., Giovannoni, S.J., 1995. Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities. Limnol. Oceanogr. 40, 148-158.
    • (1995) Limnol. Oceanogr. , vol.40 , pp. 148-158
    • Mullins, T.1    Britschgi, T.B.2    Krest, R.L.3    Giovannoni, S.J.4
  • 32
    • 0029050366 scopus 로고
    • Identification and phylogenetic analysis of toxigenic cyanobacteria by multiplex randomly amplified polymorphic DNA PCR
    • Neilan, B.A., 1995. Identification and phylogenetic analysis of toxigenic cyanobacteria by multiplex randomly amplified polymorphic DNA PCR. Appl. Environ. Microbiol. 61, 2286-2291.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 2286-2291
    • Neilan, B.A.1
  • 34
    • 0028863523 scopus 로고
    • An early origin of plastids within the cyanobacterial divergence is suggested by evolutionary trees based on complete 16S rDNA sequences
    • Nelissen, B., Van de Peer, Y., Wilmotte, A., De Wachter, R., 1995. An early origin of plastids within the cyanobacterial divergence is suggested by evolutionary trees based on complete 16S rDNA sequences. Mol. Biol. Evol. 12, 1166-1173.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 1166-1173
    • Nelissen, B.1    Van De Peer, Y.2    Wilmotte, A.3    De Wachter, R.4
  • 35
    • 0033981344 scopus 로고    scopus 로고
    • Cyanobacterial diversity in geographically related and distant host plants of the genus Gunnera
    • Nilsson, M., Bergman, B., Rasmussen, U., 2000. Cyanobacterial diversity in geographically related and distant host plants of the genus Gunnera. Arch. für Mikrobiol. 173, 97-102.
    • (2000) Arch. für Mikrobiol. , vol.173 , pp. 97-102
    • Nilsson, M.1    Bergman, B.2    Rasmussen, U.3
  • 36
  • 37
    • 0032993989 scopus 로고    scopus 로고
    • Phylogenetic relationships between toxic and non-toxic strains of the genus Microcystis based on 16S to 23S internal transcribed spacer sequence
    • Otsuka, S., Suda, S., Li, R., Watanabe, M., Oyaizu, H., Matsumoto, S., Watanabe, M.M., 1999. Phylogenetic relationships between toxic and non-toxic strains of the genus Microcystis based on 16S to 23S internal transcribed spacer sequence. FEMS Microbiol. Lett. 172, 15-21.
    • (1999) FEMS Microbiol. Lett. , vol.172 , pp. 15-21
    • Otsuka, S.1    Suda, S.2    Li, R.3    Watanabe, M.4    Oyaizu, H.5    Matsumoto, S.6    Watanabe, M.M.7
  • 38
    • 0029845869 scopus 로고    scopus 로고
    • Phenotypic variability of identical genotypes: The need for a combined approach in cyanobacterial taxonomy demonstrated on Merismopedia-like isolates
    • Palinska, K.A., Liesack, W., Rhiel, E., Krumbein, W.E., 1996. Phenotypic variability of identical genotypes: the need for a combined approach in cyanobacterial taxonomy demonstrated on Merismopedia-like isolates. Arch. für Mikrobiol. 166, 224-233.
    • (1996) Arch. für Mikrobiol. , vol.166 , pp. 224-233
    • Palinska, K.A.1    Liesack, W.2    Rhiel, E.3    Krumbein, W.E.4
  • 39
    • 0030870289 scopus 로고    scopus 로고
    • Discovery and classification of ecological diversity in the bacterial world: The role of DNA sequence data
    • Palys, T., Nakamura, L.K., Cohan, F.M., 1997. Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data. Int. J. Syst. Bacteriol. 47, 1145-1156.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 1145-1156
    • Palys, T.1    Nakamura, L.K.2    Cohan, F.M.3
  • 40
    • 0034073254 scopus 로고    scopus 로고
    • Protein-coding genes as molecular markers for ecologically distinct populations: The case of two Bacillus species
    • Palys, T., Berger, E., Mitrica, I., Nakamura, L.K., Cohan, F.M., 2000. Protein-coding genes as molecular markers for ecologically distinct populations: the case of two Bacillus species. Int. J. Syst. Evol. Microbiol. 50, 1021-1028.
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 1021-1028
    • Palys, T.1    Berger, E.2    Mitrica, I.3    Nakamura, L.K.4    Cohan, F.M.5
  • 41
    • 0031773680 scopus 로고    scopus 로고
    • MODEL TEST: Testing the model of DNA substitution
    • Posada, D., Crandall, K.A., 1998. MODEL TEST: testing the model of DNA substitution. Bioinformatics 14, 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 42
    • 77957029379 scopus 로고
    • Recognition and identification of cyanobacteria
    • Packer, L., Glazer, A.N. (Eds.), Academic Press, New York
    • Rippka, R.J., 1988. Recognition and identification of cyanobacteria. In: Packer, L., Glazer, A.N. (Eds.), Methods in Enzymology, vol. 167. Academic Press, New York, pp. 34-72.
    • (1988) Methods in Enzymology , vol.167 , pp. 34-72
    • Rippka, R.J.1
  • 43
    • 0018409915 scopus 로고
    • Generic assignments, strain histories, and properties of pure cultures of cyanobacteria
    • Rippka, R., Deruelles, J., Waterbury, J.B., Herdman, M., Stanier, R.Y., 1979. Generic assignments, strain histories, and properties of pure cultures of cyanobacteria. J. Gen. Microbiol. 111, 1-61.
    • (1979) J. Gen. Microbiol. , vol.111 , pp. 1-61
    • Rippka, R.1    Deruelles, J.2    Waterbury, J.B.3    Herdman, M.4    Stanier, R.Y.5
  • 45
    • 84989634749 scopus 로고
    • Gel purification of red algal genomic DNA: An inexpensive and rapid method for the isolation of polymerase chain reaction-friendly DNA
    • Saunders, G.W., 1993. Gel purification of red algal genomic DNA: an inexpensive and rapid method for the isolation of polymerase chain reaction-friendly DNA. J. Phycol. 29, 251-254.
    • (1993) J. Phycol. , vol.29 , pp. 251-254
    • Saunders, G.W.1
  • 46
    • 0033005732 scopus 로고    scopus 로고
    • Arthrospira (Spirulina) strains from four continents are resolved into only two clusters, based on amplified ribosomal DNA restriction analysis of the internally transcribed spacer
    • Scheldeman, P., Maurain, D., Bouhy, R., Scott, M., Muhling, M., Whitton, B.A., Belay, A., Wilmotte, A., 1999. Arthrospira (Spirulina) strains from four continents are resolved into only two clusters, based on amplified ribosomal DNA restriction analysis of the internally transcribed spacer. FEMS Microbiol. Lett. 172, 213-222.
    • (1999) FEMS Microbiol. Lett. , vol.172 , pp. 213-222
    • Scheldeman, P.1    Maurain, D.2    Bouhy, R.3    Scott, M.4    Muhling, M.5    Whitton, B.A.6    Belay, A.7    Wilmotte, A.8
  • 47
    • 0027046832 scopus 로고
    • Biogeography of stream macroalgae in North America
    • Sheath, R.G., Cole, K.M., 1992. Biogeography of stream macroalgae in North America. J. Phycol. 28, 448-460.
    • (1992) J. Phycol. , vol.28 , pp. 448-460
    • Sheath, R.G.1    Cole, K.M.2
  • 49
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt, E., Goebel, B.M., 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44, 486-849.
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 486-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 50
    • 0015076683 scopus 로고
    • Purification and properties of multi-cellular blue-green algae (order Chlorococcales)
    • Stanier, R.Y., Kunisawa, R., Mandel, M., Cohen-Bazire, G., 1971. Purification and properties of multi-cellular blue-green algae (order Chlorococcales). Bacteriol. Rev. 35, 171-205.
    • (1971) Bacteriol. Rev. , vol.35 , pp. 171-205
    • Stanier, R.Y.1    Kunisawa, R.2    Mandel, M.3    Cohen-Bazire, G.4
  • 54
    • 0031889272 scopus 로고    scopus 로고
    • Rapid diversification of marine picophytoplankton with dissimilar light-harvesting structures inferred from sequences of Prochlorococcus and Synechococcus (Cyanobacteria)
    • Urbach, E., Scanlan, D.L., Distel, D.L., Waterbury, J.B., Chrisholm, S.W., 1998. Rapid diversification of marine picophytoplankton with dissimilar light-harvesting structures inferred from sequences of Prochlorococcus and Synechococcus (Cyanobacteria). J. Mol. Evol. 46, 188-201.
    • (1998) J. Mol. Evol. , vol.46 , pp. 188-201
    • Urbach, E.1    Scanlan, D.L.2    Distel, D.L.3    Waterbury, J.B.4    Chrisholm, S.W.5
  • 56
    • 0025633560 scopus 로고
    • Fingerprinting genomes using PCR with arbitrary primers
    • Welsh, M., McClelland, J., 1990. Fingerprinting genomes using PCR with arbitrary primers. Nucl. Acids Res. 18, 7213-7218.
    • (1990) Nucl. Acids Res. , vol.18 , pp. 7213-7218
    • Welsh, M.1    McClelland, J.2
  • 57
    • 0001946852 scopus 로고    scopus 로고
    • The phylogenetic species concept (sensu Wheeler and Platnick)
    • Wheeler, Q.D., Meier, R. (Eds.), Columbia University Press, New York
    • Wheeler, Q.D., Platnick, N.I., 2000. The phylogenetic species concept (sensu Wheeler and Platnick). In: Wheeler, Q.D., Meier, R. (Eds.), Species Concepts and Phylogenetic Theory, A Debate. Columbia University Press, New York, pp. 55-69.
    • (2000) Species Concepts and Phylogenetic Theory, a Debate , pp. 55-69
    • Wheeler, Q.D.1    Platnick, N.I.2
  • 59
    • 0002096419 scopus 로고
    • Diversity, ecology, and taxonomy of the cyanobacteria
    • Mann, N.H., Carr, N.G. (Eds.), Plenum Press, New York
    • Whitton, B.A., 1992. Diversity, ecology, and taxonomy of the cyanobacteria. In: Mann, N.H., Carr, N.G. (Eds.), Photosynthetic Prokaryotes. Plenum Press, New York, pp. 1-51.
    • (1992) Photosynthetic Prokaryotes , pp. 1-51
    • Whitton, B.A.1


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