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Volumn 12, Issue , 2011, Pages

Gene set analysis for longitudinal gene expression data

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL FUNCTIONS; CORRELATION STRUCTURE; EXPERIMENTAL CONDITIONS; GENE EXPRESSION PROFILES; LIMITING DISTRIBUTIONS; NATIONAL CENTER FOR BIOTECHNOLOGY INFORMATIONS; NON-PARAMETRIC STATISTICS; NONPARAMETRIC APPROACHES;

EID: 79959703148     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-273     Document Type: Article
Times cited : (10)

References (29)
  • 1
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • 10.1073/pnas.091062498, 33173, 11309499
    • Tusher VG, Tibshirani R, Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 2001, 98(9):5116-21. 10.1073/pnas.091062498, 33173, 11309499.
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.9 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 2
    • 0043247592 scopus 로고    scopus 로고
    • DNA array analysis of interleukin-2-regulated immediate/early genes
    • 10.1186/1476-9433-1-2, 149405, 12459040
    • Beadling C, Smith KA. DNA array analysis of interleukin-2-regulated immediate/early genes. Med Immunol 2002, 1:2. 10.1186/1476-9433-1-2, 149405, 12459040.
    • (2002) Med Immunol , vol.1 , pp. 2
    • Beadling, C.1    Smith, K.A.2
  • 4
    • 6944244084 scopus 로고    scopus 로고
    • A module map showing conditional activity of expression modules in cancer
    • 10.1038/ng1434, 15448693
    • Segal E, Friedman N, Koller D, Regev A. A module map showing conditional activity of expression modules in cancer. Nat Genet 2004, 36(10):1090-8. 10.1038/ng1434, 15448693.
    • (2004) Nat Genet , vol.36 , Issue.10 , pp. 1090-1098
    • Segal, E.1    Friedman, N.2    Koller, D.3    Regev, A.4
  • 6
    • 18744389489 scopus 로고    scopus 로고
    • Significance analysis of functional categories in gene expression studies: a structured permutation approach
    • 10.1093/bioinformatics/bti260, 15647293
    • Barry WT, Nobel AB, Wright FA. Significance analysis of functional categories in gene expression studies: a structured permutation approach. Bioinformatics 2005, 21(9):1943-9. 10.1093/bioinformatics/bti260, 15647293.
    • (2005) Bioinformatics , vol.21 , Issue.9 , pp. 1943-1949
    • Barry, W.T.1    Nobel, A.B.2    Wright, F.A.3
  • 9
    • 24644519314 scopus 로고    scopus 로고
    • Significance analysis of time course microarray experiments
    • 10.1073/pnas.0504609102, 1201697, 16141318
    • Storey JD, XIao W, Leek JT, Tompkins RG, Davis RW. Significance analysis of time course microarray experiments. Proc Natl Acad Sci USA 2005, 102(36):12837-12842. 10.1073/pnas.0504609102, 1201697, 16141318.
    • (2005) Proc Natl Acad Sci USA , vol.102 , Issue.36 , pp. 12837-12842
    • Storey, J.D.1    XIao, W.2    Leek, J.T.3    Tompkins, R.G.4    Davis, R.W.5
  • 10
    • 0141850391 scopus 로고    scopus 로고
    • Statistical significance analysis of longitudinal gene expression data
    • 10.1093/bioinformatics/btg206, 12967958
    • Guo X, Qi H, Verfaillie CM, Pan W. Statistical significance analysis of longitudinal gene expression data. Bioinformatics 2003, 19(13):1628-1635. 10.1093/bioinformatics/btg206, 12967958.
    • (2003) Bioinformatics , vol.19 , Issue.13 , pp. 1628-1635
    • Guo, X.1    Qi, H.2    Verfaillie, C.M.3    Pan, W.4
  • 11
    • 0037433769 scopus 로고    scopus 로고
    • Statistical tests for identifying differentially expressed genes in time-course microarray experiments
    • 10.1093/bioinformatics/btg068, 12691981
    • Park T, Yi SG, Lee S, Lee SY, Yoo DH, Ahn JI, Lee YS. Statistical tests for identifying differentially expressed genes in time-course microarray experiments. Bioinformatics 2003, 19(6):694-703. 10.1093/bioinformatics/btg068, 12691981.
    • (2003) Bioinformatics , vol.19 , Issue.6 , pp. 694-703
    • Park, T.1    Yi, S.G.2    Lee, S.3    Lee, S.Y.4    Yoo, D.H.5    Ahn, J.I.6    Lee, Y.S.7
  • 12
    • 33750414249 scopus 로고    scopus 로고
    • A multivariate empirical bayes statistic for replicated microarray time course data
    • Tai Y, Speed T. A multivariate empirical bayes statistic for replicated microarray time course data. Ann Statist 2006, 34:2387-2412.
    • (2006) Ann Statist , vol.34 , pp. 2387-2412
    • Tai, Y.1    Speed, T.2
  • 13
    • 35548991027 scopus 로고    scopus 로고
    • Testing the significance of cell-cycle patterns in time-course microarray data using nonparametric quadratic inference functions
    • Tsai GF, Qu A. Testing the significance of cell-cycle patterns in time-course microarray data using nonparametric quadratic inference functions. Comput Stat Data Anal 2008, 52(3):1387-1398.
    • (2008) Comput Stat Data Anal , vol.52 , Issue.3 , pp. 1387-1398
    • Tsai, G.F.1    Qu, A.2
  • 14
    • 0034927555 scopus 로고    scopus 로고
    • Analysis of variance for gene expression microarray data
    • 10.1089/10665270050514954, 11382364
    • Kerr MK, Martin M, Churchill GA. Analysis of variance for gene expression microarray data. J Comput Biol 2000, 7(6):819-37. 10.1089/10665270050514954, 11382364.
    • (2000) J Comput Biol , vol.7 , Issue.6 , pp. 819-837
    • Kerr, M.K.1    Martin, M.2    Churchill, G.A.3
  • 15
    • 2942542735 scopus 로고    scopus 로고
    • Three-parameter lognormal distribution ubiquitously found in cDNA microarray data and its application to parametric data treatment
    • 10.1186/1471-2105-5-5, 333424, 14718068
    • Konishi T. Three-parameter lognormal distribution ubiquitously found in cDNA microarray data and its application to parametric data treatment. BMC Bioinformatics 2004, 5:5. 10.1186/1471-2105-5-5, 333424, 14718068.
    • (2004) BMC Bioinformatics , vol.5 , pp. 5
    • Konishi, T.1
  • 16
    • 63549122405 scopus 로고    scopus 로고
    • Multivariate analysis of variance test for gene set analysis
    • [Tsai, Chen-An Chen, James J Research Support, Non-U.S. Gov't England Bioinformatics (Oxford, England) Bioinformatics. 2009 Apr 1;25(7):897-903. Epub 2009 Mar 2.], 10.1093/bioinformatics/btp098, 19254923
    • Tsai CA, Chen JJ. Multivariate analysis of variance test for gene set analysis. Bioinformatics 2009, 25(7):897-903. [Tsai, Chen-An Chen, James J Research Support, Non-U.S. Gov't England Bioinformatics (Oxford, England) Bioinformatics. 2009 Apr 1;25(7):897-903. Epub 2009 Mar 2.], 10.1093/bioinformatics/btp098, 19254923.
    • (2009) Bioinformatics , vol.25 , Issue.7 , pp. 897-903
    • Tsai, C.A.1    Chen, J.J.2
  • 18
    • 1542506097 scopus 로고    scopus 로고
    • Estimating equations for association structures
    • discussion 875-7,879-80, 10.1002/sim.1650, 15027075
    • Yan J, Fine J. Estimating equations for association structures. Stat Med 2004, 23(6):859-74. discussion 875-7,879-80, 10.1002/sim.1650, 15027075.
    • (2004) Stat Med , vol.23 , Issue.6 , pp. 859-874
    • Yan, J.1    Fine, J.2
  • 19
    • 0027406827 scopus 로고
    • Isolation of interleukin 2-induced immediate-early genes
    • 10.1073/pnas.90.7.2719, 46167, 7681987
    • Beadling C, Johnson KW, Smith KA. Isolation of interleukin 2-induced immediate-early genes. Proc Natl Acad Sci USA 1993, 90(7):2719-23. 10.1073/pnas.90.7.2719, 46167, 7681987.
    • (1993) Proc Natl Acad Sci USA , vol.90 , Issue.7 , pp. 2719-2723
    • Beadling, C.1    Johnson, K.W.2    Smith, K.A.3
  • 22
    • 33745827054 scopus 로고    scopus 로고
    • A role for STAT5A/B in protection of peripheral T-lymphocytes from postactivation apoptosis: insights from gene expression profiling
    • 10.1016/j.cyto.2006.04.003, 16757175
    • Gatzka M, Piekorz R, Moriggl R, Rawlings J, Ihle JN. A role for STAT5A/B in protection of peripheral T-lymphocytes from postactivation apoptosis: insights from gene expression profiling. Cytokine 2006, 34(3-4):143-54. 10.1016/j.cyto.2006.04.003, 16757175.
    • (2006) Cytokine , vol.34 , Issue.3-4 , pp. 143-154
    • Gatzka, M.1    Piekorz, R.2    Moriggl, R.3    Rawlings, J.4    Ihle, J.N.5
  • 24
    • 38049022596 scopus 로고    scopus 로고
    • Identification of expression patterns of IL-2-responsive genes in the murine T cell line CTLL-2
    • 10.1089/jir.2006.0169, 18184039
    • Zhang Z, Martino A, Faulon JL. Identification of expression patterns of IL-2-responsive genes in the murine T cell line CTLL-2. J Interferon Cytokine Res 2007, 27(12):991-5. 10.1089/jir.2006.0169, 18184039.
    • (2007) J Interferon Cytokine Res , vol.27 , Issue.12 , pp. 991-995
    • Zhang, Z.1    Martino, A.2    Faulon, J.L.3
  • 25
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • 10.1093/bioinformatics/19.2.185, 12538238
    • Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003, 19(2):185-93. 10.1093/bioinformatics/19.2.185, 12538238.
    • (2003) Bioinformatics , vol.19 , Issue.2 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 26
    • 33744975264 scopus 로고    scopus 로고
    • L2L: a simple tool for discovering the hidden significance in microarray expression data
    • 10.1186/gb-2005-6-9-r81, 1242216, 16168088
    • Newman JC, Weiner AM. L2L: a simple tool for discovering the hidden significance in microarray expression data. Genome Biol 2005, 6(9):R81. 10.1186/gb-2005-6-9-r81, 1242216, 16168088.
    • (2005) Genome Biol , vol.6 , Issue.9
    • Newman, J.C.1    Weiner, A.M.2
  • 27
    • 0036020892 scopus 로고    scopus 로고
    • A direct approach to false discovery rates
    • Storey J. A direct approach to false discovery rates. J R Statist Soc B 2002, 64(3):479-498.
    • (2002) J R Statist Soc B , vol.64 , Issue.3 , pp. 479-498
    • Storey, J.1
  • 28
    • 47749156020 scopus 로고    scopus 로고
    • A unified approach to false discovery rate estimation
    • 10.1186/1471-2105-9-303, 2475539, 18613966
    • Strimmer K. A unified approach to false discovery rate estimation. BMC Bioinformatics 2008, 9:303. 10.1186/1471-2105-9-303, 2475539, 18613966.
    • (2008) BMC Bioinformatics , vol.9 , pp. 303
    • Strimmer, K.1
  • 29
    • 0033007321 scopus 로고    scopus 로고
    • Mature T lymphocyte apoptosis-immune regulation in a dynamic and unpredictable antigenic environment
    • 10.1146/annurev.immunol.17.1.221, 10358758
    • Lenardo M, Chan KM, Hornung F, McFarland H, Siegel R, Wang J, Zheng L. Mature T lymphocyte apoptosis-immune regulation in a dynamic and unpredictable antigenic environment. Annu Rev Immunol 1999, 17:221-53. 10.1146/annurev.immunol.17.1.221, 10358758.
    • (1999) Annu Rev Immunol , vol.17 , pp. 221-253
    • Lenardo, M.1    Chan, K.M.2    Hornung, F.3    McFarland, H.4    Siegel, R.5    Wang, J.6    Zheng, L.7


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