메뉴 건너뛰기




Volumn 4, Issue , 2011, Pages

Systematic Bias in genomic classification due to contaminating non-neoplastic tissue in breast tumor samples

Author keywords

bias; biomarker validation; breast cancer; genomic assays; normal tissue

Indexed keywords

ADULT; ARTICLE; BREAST CANCER; CANCER CLASSIFICATION; CANCER RELAPSE; CANCER TISSUE; CONTAMINATION; CONTROLLED STUDY; DISEASE FREE SURVIVAL; GENETIC ANALYSIS; HUMAN; HUMAN TISSUE; MAJOR CLINICAL STUDY; PREDICTION; PREDICTIVE VALUE; PRIORITY JOURNAL; PROCESS MODEL; QUALITY CONTROL; RECURRENCE RISK; RELIABILITY; SCORING SYSTEM; SENSITIVITY ANALYSIS; SYSTEMATIC ERROR; TISSUE CONTAMINATION; BREAST; BREAST TUMOR; CLASSIFICATION; COMPUTER SIMULATION; EPIDEMIOLOGY; FEMALE; GENETICS; GENOMICS; HUMAN GENOME; METHODOLOGY; MICROARRAY ANALYSIS; NEOPLASM; PATHOLOGY; REPRODUCIBILITY;

EID: 79959654839     PISSN: None     EISSN: 17558794     Source Type: Journal    
DOI: 10.1186/1755-8794-4-54     Document Type: Article
Times cited : (78)

References (33)
  • 1
    • 15544384884 scopus 로고    scopus 로고
    • Gene expression profiling of breast cancer: A new tumor marker
    • DOI 10.1200/JCO.2005.12.005
    • Gene expression profiling of breast cancer: a new tumor marker. LJ van't Veer, S Paik, DF Hayes, J Clin Oncol 2005 23 8 1631 1635 10.1200/JCO.2005.12.005 15755970 (Pubitemid 46211417)
    • (2005) Journal of Clinical Oncology , vol.23 , Issue.8 , pp. 1631-1635
    • Van't Veer, L.J.1    Paik, S.2    Hayes, D.F.3
  • 10
    • 80052965820 scopus 로고    scopus 로고
    • Random error and bias
    • Wiley & Sons Piantadosi S
    • Random error and bias. S Piantadosi, Clinical Trials Wiley & Sons, Piantadosi S, 2005 167 186
    • (2005) Clinical Trials , pp. 167-186
    • Piantadosi, S.1
  • 15
    • 0035224389 scopus 로고    scopus 로고
    • Separation of samples into their constituents using gene expression data
    • 10.1093/bioinformatics/17.suppl-1.S279 11473019
    • Separation of samples into their constituents using gene expression data. D Venet, F Pecasse, C Maenhaut, H Bersini, Bioinformatics 2001 17 Suppl 1 279 287 10.1093/bioinformatics/17.suppl-1.S279 11473019
    • (2001) Bioinformatics , vol.17 , Issue.SUPPL. 1 , pp. 19279-287
    • Venet, D.1    Pecasse, F.2    Maenhaut, C.3    Bersini, H.4
  • 18
    • 33748351161 scopus 로고    scopus 로고
    • Computational expression deconvolution in a complex mammalian organ
    • DOI 10.1186/1471-2105-7-328
    • Computational expression deconvolution in a complex mammalian organ. M Wang, SR Master, LA Chodosh, BMC Bioinformatics 2006 7 328 10.1186/1471-2105-7- 328 16817968 (Pubitemid 44335936)
    • (2006) BMC Bioinformatics , vol.7 , pp. 328
    • Wang, M.1    Master, S.R.2    Chodosh, L.A.3
  • 19
    • 33749129772 scopus 로고    scopus 로고
    • Robust computational reconstitution - A new method for the comparative analysis of gene expression in tissues and isolated cell fractions
    • DOI 10.1186/1471-2105-7-369
    • Robust computational reconstitution-a new method for the comparative analysis of gene expression in tissues and isolated cell fractions. M Hoffmann, D Pohlers, D Koczan, HJ Thiesen, S Wolfl, RW Kinne, BMC Bioinformatics 2006 7 369 10.1186/1471-2105-7-369 16889662 (Pubitemid 44468442)
    • (2006) BMC Bioinformatics , vol.7 , pp. 369
    • Hoffmann, M.1    Pohlers, D.2    Koczan, D.3    Thiesen, H.-J.4    Wolfl, S.5    Kinne, R.W.6
  • 20
    • 25444507414 scopus 로고    scopus 로고
    • In silico microdissection of microarray data from heterogeneous cell populations
    • DOI 10.1186/1471-2105-6-54
    • In silico microdissection of microarray data from heterogeneous cell populations. H Lahdesmaki, L Shmulevich, V Dunmire, O Yli-Harja, W Zhang, BMC Bioinformatics 2005 6 54 10.1186/1471-2105-6-54 15766384 (Pubitemid 41357961)
    • (2005) BMC Bioinformatics , vol.6 , pp. 54
    • Lahdesmaki, H.1    Shmulevich, I.2    Dunmire, V.3    Yli-Harja, O.4    Zhang, W.5
  • 21
    • 36948998970 scopus 로고    scopus 로고
    • Electronically subtracting expression patterns from a mixed cell population
    • DOI 10.1093/bioinformatics/btm508
    • Electronically subtracting expression patterns from a mixed cell population. MM Gosink, HT Petrie, NF Tsinoremas, Bioinformatics 2007 23 24 3328 3334 10.1093/bioinformatics/btm508 17956877 (Pubitemid 350238885)
    • (2007) Bioinformatics , vol.23 , Issue.24 , pp. 3328-3334
    • Gosink, M.M.1    Petrie, H.T.2    Tsinoremas, N.F.3
  • 22
    • 4444305034 scopus 로고    scopus 로고
    • Mixture models for assessing differential expression in complex tissues using microarray data
    • DOI 10.1093/bioinformatics/bth139
    • Mixture models for assessing differential expression in complex tissues using microarray data. D Ghosh, Bioinformatics 2004 20 11 1663 1669 10.1093/bioinformatics/bth139 14988124 (Pubitemid 39162044)
    • (2004) Bioinformatics , vol.20 , Issue.11 , pp. 1663-1669
    • Ghosh, D.1
  • 23
  • 24
    • 4344577410 scopus 로고    scopus 로고
    • Laser capture microdissection and advanced molecular analysis of human breast cancer
    • DOI 10.1023/B:JOMG.0000010033.49464.0c, Microarrays
    • Laser capture microdissection and advanced molecular analysis of human breast cancer. AP Fuller, D Palmer-Toy, MG Erlander, DC Sgroi, J Mammary Gland Biol Neoplasia 2003 8 3 335 345 14973377 (Pubitemid 39137515)
    • (2003) Journal of Mammary Gland Biology and Neoplasia , vol.8 , Issue.3 , pp. 335-345
    • Fuller, A.P.1    Palmer-Toy, D.2    Erlander, M.G.3    Sgroi, D.C.4
  • 25
    • 0036244746 scopus 로고    scopus 로고
    • A research-based tumor tissue bank of gynecologic oncology: Characteristics of nucleic acids extracted from normal and tumor tissues from different sites
    • DOI 10.1046/j.1525-1438.2002.01085.x
    • A research-based tumor tissue bank of gynecologic oncology: characteristics of nucleic acids extracted from normal and tumor tissues from different sites. TY Chu, KS Hwang, MH Yu, HS Lee, HC Lai, JY Liu, Int J Gynecol Cancer 2002 12 2 171 176 10.1046/j.1525-1438.2002.01085.x 11975676 (Pubitemid 34477878)
    • (2002) International Journal of Gynecological Cancer , vol.12 , Issue.2 , pp. 171-176
    • Chu, T.-Y.1    Hwang, K.-S.2    Yu, M.-H.3    Lee, H.-S.4    Lai, H.-C.5    Liu, J.-Y.6
  • 27
    • 54049129625 scopus 로고    scopus 로고
    • Pivotal evaluation of the accuracy of a biomarker used for classification or prediction: Standards for study design
    • 10.1093/jnci/djn326 18840817
    • Pivotal evaluation of the accuracy of a biomarker used for classification or prediction: standards for study design. MS Pepe, Z Feng, H Janes, PM Bossuyt, JD Potter, J Natl Cancer Inst 2008 100 20 1432 1438 10.1093/jnci/djn326 18840817
    • (2008) J Natl Cancer Inst , vol.100 , Issue.20 , pp. 1432-1438
    • Pepe, M.S.1    Feng, Z.2    Janes, H.3    Bossuyt, P.M.4    Potter, J.D.5
  • 28
    • 73249122658 scopus 로고    scopus 로고
    • First-generation genomic tests for breast cancer treatment
    • First-generation genomic tests for breast cancer treatment. F Andre, S Delaloge, Lancet Oncol 11 1 6 7
    • Lancet Oncol , vol.11 , Issue.1 , pp. 6-7
    • Andre, F.1    Delaloge, S.2
  • 29
    • 49249108600 scopus 로고    scopus 로고
    • Documenting biospecimen conditions in reports of studies
    • author reply 651 18698061
    • Documenting biospecimen conditions in reports of studies. JA Robb, HM Moore, CC Compton, Jama 2008 300 6 650 651 author reply 651 18698061
    • (2008) Jama , vol.300 , Issue.6 , pp. 650-651
    • Robb, J.A.1    Moore, H.M.2    Compton, C.C.3
  • 31
    • 65649113589 scopus 로고    scopus 로고
    • Recommended principles and practices for validating clinical molecular pathology tests
    • 19415949
    • Recommended principles and practices for validating clinical molecular pathology tests. L Jennings, VM Van Deerlin, ML Gulley, Arch Pathol Lab Med 2009 133 5 743 755 19415949
    • (2009) Arch Pathol Lab Med , vol.133 , Issue.5 , pp. 743-755
    • Jennings, L.1    Van Deerlin, V.M.2    Gulley, M.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.