AFLP analysis to assess genomic stability in Solanum regenerants derived from wild and cultivated species

Plant Biotechnology Reports

Volumn 5, Issue 3, 2011, Pages 265-271

  Aversano, Riccardo ^a   Di Dato, Francesco ^a   Di Matteo, Antonio ^a   Frusciante, Luigi ^a   Carputo, Domenico ^a  

^a UNIVERSITY OF NAPLES FEDERICO II   (Italy)

Author keywords

Genetic variability; Polyploidy; Potato; Somaclonal variation; Tissue culture

Indexed keywords

SOLANUM; SOLANUM BULBOCASTANUM; SOLANUM CARDIOPHYLLUM; SOLANUM TUBEROSUM; TUBER (TRUFFLE);

EID: 79959638733     PISSN: 18635466     EISSN: 18635474     Source Type: Journal    
DOI: 10.1007/s11816-011-0181-4     Document Type: Article

References (42)

1. Abe K, Otomo T, Saito S (1999) The use of somaclonal variation in rice breeding. I. Genetic variation in rice regenerant pedigree lines derived from a single callus. Rep Kyushu Branch Crop Sci Soc Jpn 56: 59-63.
2. Arencibia A, Carmona ER, Cornide MT, Castiglione S, Orelly J, Chinea A, Oramai P, Sala F (1999) Somaclonal variation in insect-resistance transgenic sugarcane (Saccharum hybrid) plants produced by cell electroporation. Transgenic Res 8: 349-360.
3. Aversano R, Savarese S, De Nova JM, Frusciante L, Punzo M, Carputo D (2009) Genetic stability at nuclear and plastid DNA level in regenerated plants of Solanum species and hybrids. Euphytica 165: 353-361. doi: 10. 1007/s10681-008-9797-z.
4. Bairu MW, Adeyemi OA, van Staden J (2011) Somaclonal variation in plants: causes and detection methods. Plant Growth Regul 63: 147-173.
5. Barandalla L, Ritter E, Ruiz De Galarreta JI (2006) Oryzalin treatment of potato diploids yields tetraploid and chimeric plants from which euploids could be derived by callus induction. Potato Res 10: 143-154.
6. Bayliss MW (1980) Chromosomal variation in plant tissue culture. Int Rev Cytol 11: 113-143.
7. Camadro E, Carputo D, Peloquin SJ (2004) Substitutes for genome differentiation in tuber-bearing Solanum: interspecific pollen-pistil incompatibility, nuclear-cytoplasmic male sterility, and endosperm. Theor Appl Genet 109: 1369-1376. doi: 10. 1007/s00122-004-1753-2.
8. Cardi T, Carputo D, Frusciante L (1992) In vitro shoot regeneration and chromosome doubling in 2x-potato and 3x-potato clones. Am Potato J 69: 1-12.
9. Carputo D, Barone A, Cardi T, Sebastiano A, Frusciante L, Peloquin SJ (1997) Endosperm balance number manipulation for direct in vivo germplasm introgression to potato from a sexually isolated relative (Solanum commersonii Dun). Proc Natl Acad Sci USA 94: 12013-12017.
10. Devarumath RM, Nandy S, Rani V, Marimuthu S, Muraleedharan N, Raina SN (2002) RAPD, ISSR and RFLP fingerprints as useful markers to evaluate genetic integrity of micropropagated plants of three diploid and triploid elite tea clones representing Camellia sinensis (China type) and C. assamica ssp. assamica (Assam- India type). Plant Cell Rep 21: 166-173.
11. Golz J, Oh H, Su V, Kusaba M, Newbigin E (2001) Genetic analysis of Nicotiana pollen-part mutants is consistent with the presence of an S-ribonuclease inhibitor at the S-locus. Proc Natl Acad Sci USA 98: 15372-15376. doi: 10. 1073/pnas. 261571598.
12. Grammatikaki G, Vovlas N, Kaltsikes PJ, Sonnino A (1999) Response of potato gametoclones to infection of four root-knot nematode (Meloidogyne) species. Russ J Nematol 7: 155-159.
13. Guo W, Gong L, Ding Z, Li Y, Li F, Zhao S, Liu B (2006) Genomic instability in phenotypically normal regenerants of medical plant Codonopsis lanceolata Benth. et Hook. f., as revealed by ISSR and RAPD markers. Plant Cell Rep 25: 896-906.
14. Hale AL, Miller JC (2005) Suitability of AFLP and microsatellite marker analysis for discriminating intraclonal variants of the potato cultivar Russet Norkotah. J Am Soc Hortic Sci 130: 624-630.
15. Hashmi G, Huettel R, Meyer R, Krusberg L, Hammerschlag P (1997) RAPD analysis of somaclonal variants derived from embryo callus cultures of peach. Plant Cell Rep 16: 624-627.
16. Hasim ZN, Cambell WF, Carman JG (1990) Morphological analysis of spring wheat (CIMMYT cultivar PC YT-10) somaclones. Plant Cell Tissue Organ 20: 95-100.
17. Hossain MA, Konisho K, Minami M, Nemoto K (2003) Somaclonal variation of regenerated plants in chili pepper (Capsicum annuum L). Euphytica 130: 233-239.
18. Iovene M, Frusciante L, Carputo D (2002) Shoot regeneration and chromosome doubling in accessions of 2x(1EBN) and 4x(2EBN) wild Solanum species. J Genet Breed 56: 99-105.
19. Jain S (2001) Tissue culture-derived variation in crop improvement. Euphytica 118: 153-166.
20. Jansky S, Peloquin SJ (2006) Advantages of wild diploid Solanum species over cultivated diploid relatives in potato breeding programs. Genet Resour Crop Evol 53: 669-674. doi: 10. 1007/s10722-004-2949-7.
21. Kaeppler SM, Kaeppler HF, Rhee Y (2000) Epigenetic aspects of somaclonal variation in plants. Plant Mol Biol 43: 179-188.
22. Karp A, Risiott R, Jones MJK, Bright SWJ (1984) Cromosome doubling in monohaploid and dihaploid potatoes by regeneration from coultured leaf explants. Plant Cell Tissue Organ 3: 363-373.
23. Labra M, Vannini C, Grassi F, Bracale M, Balsemin M, Basso B, Sala F (2004) Genomic stability in Arabidopsis thaliana transgenic plants obtained by floral dip. Theor Appl Genet 109: 1512-1518.
24. Langille AR, Lan Y, Gustine DL (1998) Seeking improved nutritional properties for the potato: ethionine-resistant protoclones. Am Potato J 70: 735-741.
25. Li X, Yu X, Wang N, Feng Q, Dong Z, Liu L, Shen J, Liu B (2007) Genetic and epigenetic instabilities induced by tissue culture in wild barley (Hordeum brevisubulatum (Trin) Link). Plant Cell Tissue Organ 90: 153-168.
26. Luu D, Qin X, Morse D, Cappadocia M (2000) S-RNase uptake by compatible pollen tubes in gametophytic self-incompatibility. Nature 407: 649-651.
27. Martelotto LG, Ortiz JPA, Stein J, Espinoza F, Quarin CL, Pessino SC (2007) Genome rearrangements derived from autopolyploidization in Paspalum sp. Plant Sci 172: 970-977.
28. Murashige T, Skoog F (1962) A revised medium from rapid growth and bioassays with tobacco tissue cultures. Physiol Plant 15: 251-258.
29. Pijnacker LP, Ferwerda MA, Puite KJ, Schaart JG (1989) Chromosome elimination and mutation in tetraploid somatic hybrids of Solanum tuberosum and Solanum phureja. Plant Cell Rep 8: 82-85.
30. Polanco C, Ruiz ML (2002) AFLP analysis of somaclonal variation in Arabidopsis thaliana regenerated plants. Plant Sci 162: 817-824.
31. Schwarz G, Herz M, Huang XQ, Michalek W, Jahoor A, Wenzel G, Mohler V (2000) Application of fluorescence-based semi-automated AFLP analysis in barley and wheat. Theor Appl Genet 100: 545-551.
32. Sharma SK, Bryan GJ, Winfield MO, Millam S (2007) Stability of potato (Solanum tuberosum L.) plants regenerated via somatic embryos, axillary bud proliferated shoots, microtubers and true potato seeds: a comparative phenotypic, cytogenetic and molecular assessment. Planta 226: 1449-1458. doi: 10. 1007/s00425-007-0583-2.
33. Sree Ramulu K (1987) Genetic instability during plant regeneration in potato, origin and implications. Plant Physiol 6: 211-218.
34. Stupar RM, Bhaskar PB, Yandell BS, Rensink WA, Hart AL, Ouyang S, Veilleux RE, Busse JS, Erhardt RJ, Buell CR, Jiang J (2007) Phenotypic and transcriptomic changes associated with potato autopolyploidization. Genetics 176: 2055-2067. doi: 10. 1534/genetics. 107. 074286.
35. Sultana R, Tahira F, Tayyab H, Khurram B, Shiekh R (2005) RAPD characterization of somaclonal variation in indica basmati rice. Pak J Bot 37: 249-262.
36. Taylor RJ, Secor GA, Ruby CL, Orr PH (1993) Tuber yield, soft rot resistance, bruising resistance and processing quality in a population of potato (cv. Crystal) somatoclones. Am Potato J 70: 117-130.
37. Thieme R, Griess H (1996) Somaclonal variation of haulm growth, earliness, and yield in potato. Potato Res 39: 355-365.
38. Vazquez AM (2001) Insight into somaclonal variation. Plant Biosyst 135: 57-62.
39. Veilleux RE, Johnson AAT (1998) Somaclonal variation: molecular evidence and utilization in plant breeding. Plant Breed Rev 16: 229-268.
40. Vendrame WA, Kochert G, Wetzstein HY (1999) AFLP analysis of variation in pecan somatic embryos. Plant Cell Rep 28: 853-857.
41. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23: 4407-4414.
42. Wilhelm E (2000) Somatic embryogenesis in oak (Quercus spp.). In Vitro Cell Dev-Pl 36: 349-357.