Genomic sequencing and analysis of Clostera anachoreta granulovirus

Archives of Virology

Volumn 156, Issue 7, 2011, Pages 1185-1198

  Liang, Zhenpu ^a   Zhang, Xiaoxia ^a   Yin, Xinming ^a   Cao, Sumei ^a   Xu, Feng ^a  

^a HENAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS PROTEIN;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CHEMISTRY; CLASSIFICATION; GENETICS; GENOMICS; GRANULOVIRUS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; MOTH; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE ALIGNMENT; VIROLOGY;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; GENOMICS; GRANULOVIRUS; MOLECULAR SEQUENCE DATA; MOTHS; PHYLOGENY; SEQUENCE ALIGNMENT; VIRAL PROTEINS;

CLOSTERA ANACHORETA; CLOSTERA ANACHORETA GRANULOVIRUS; CYDIA POMONELLA GRANULOVIRUS; GRANULOVIRUS; LEPIDOPTERA; NOTODONTIDAE;

EID: 79959619502     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-011-0977-0     Document Type: Article

References (61)

1. Afonso CL, Tulman ER, Lu Z, Balinsky CA, Moser BA, Becnel JJ, Rock DL, Kutish GF (2001) Genome sequence of a baculovirus pathogenic for Culex nigripalpus. J Virol 75: 11157-11165.
2. Ayres MD, Howard SC, Kuzio J, Lopez-Ferber M, Possee RD (1994) The complete DNA sequence of Autographa californica nuclear polyhedrosis virus. Virology 202: 586-605.
3. Birnbaum MJ, Clenm RJ, Miller LK (1994) An apoptosis-inhibiting gene from a nuclear polyhedrosis virus encoding a polypeptide with Cys/His sequence motifs. J Virol 68: 2521-2528.
4. Blissard GW, Kogan PH, Wei R, Rohrmann GF (1992) A synthetic early promoter from a baculovirus: roles of the TATA box and conserved start site CAGT sequence in basal levels of transcription. Virology 190: 783-793.
5. Chang JH, Choi JY, Jin BR, Roh JY, Olszewski JA, Seo SJ, O'Reilly DR, Je YH (2003) An improved baculovirus insecticide producing occlusion bodies that contain Bacillus thuringiensis insect toxin. J Invertebr Pathol 84: 30-37.
6. Chen XW, Ijkel WFJ, Tarchini R, Sun XL, Sandbrink H, Wang HZ, Zuidema D, Lankhorst RK, Vlak JM, Hu ZH (2001) The sequence of the Helicoverpa armigera single nucleocapsid nucleopolyhedrovirus genome. J Gen Virol 82: 241-257.
7. Chen XW, Zhang WJ, Wong J, Chun G, Lu A, McCutchen BF, Presnail JK, Herrmann R, Dolan M, Tingey S, Hu ZH, Vlak JM (2002) Comparative analysis of the complete genome sequences of Helicoverpa zea and Helicoverpa armigera single-nucleocapsid nucleopolyhedroviruses. J Gen Virol 83: 673-684.
8. Eldridge R, O'Reilly DR, Miller LK (1992) Efficacy of a baculovirus pesticide expressing an eclosion hormone gene. Biol Control 2: 104-110.
9. Escasa SR, Lauzon HAM, Mathur AC, Krell PJ, Arif BM (2006) Sequence analysis of the Choristoneura occidentalis granulovirus genome. J Gen Virol 87: 1917-1933.
10. Federici BA (1997) Baculovirus pathogenesis. In: Miller LK (ed) The baculoviruses. Plenum, New York, pp 33-59.
11. Friesen PD (1997) Regulation of baculovirus early gene expression. In: Miller LK (ed) The baculoviruses. Plenum, New York, pp 141-170.
12. Fuchs LY, Woods MS, Weaver RF (1983) Viral transcription during Autographa californica nuclear polyhedrosis virus infection: a novel RNA polymerase induced in infected Spodoptera frugiperda cells. J Virol 48: 641-646.
13. Garcia-Maruniak A, Maruniak JE, Zanotto PMA, Doumbouya AE, Liu JC, Merritt TM, Lanoie JS (2004) Sequence analysis of the genome of the Neodiprion sertifer nucleopolyhedrovirus. J Virol 78: 7036-7051.
14. Garcia-Maruniak A, Pavan OHO, Maruniak JE (1996) A variable region of Anticarsia gemmatalis nuclear polyhedrosis virus contains tandemly repeated DNA sequences. Virus Res 41: 123-132.
15. Gomi S, Majima K, Maea S (1999) Sequence analysis of the genome of Bombys mori nucleopolyhedrovirus. J Gen Virol 80: 1323-1337.
16. Gomi S, Zhou CE, Yih W, Majima K, Maeda S (1997) Deletion analysis of four of eighteen late gene expression factor gene homologues of the baculovirus, BmNPV. Virology 230: 35-47.
17. Guarino LA, Smith M (1992) Regulation of delayed-early gene transcription by dual TATA boxes. J Virol 66: 3733-3739.
18. Harrison RL, Puttler B, Popham HJR (2008) Genomic sequence analysis of a fast-killing isolate of Spodoptera frugiperda multiple nucleopolyhedrovirus. J Gen Virol 89: 775-790.
19. Hashimoto Y, Harakawa T, Ueno Y, Fujita T, Sano Y, Matsumoto T (2000) Sequence analysis of the Plutella xylostella granulovirus genome. Virology 275: 358-372.
20. Hawtin RE, Zarkowska T, Arnold K, Thomas CJ, Gooday GW, King LA, Kuzio JA, Possee RD (1997) Liquefaction of Autographa californica nucleopolyhedrovirus-infected insects is dependent on the integrity of virus-encoded chitinase and cathepsin genes. Virology 238: 243-253.
21. Hayakawa T, Ko R, Okano K, Seong SI, Goto C, Maeda S (1999) Sequence analysis of the Xestia c-nigrum granulovirus genome. Virology 262: 277-297.
22. Herniou EA, Olszewski JA, Cory JS, O'Reilly DR (2003) The genome sequence and evolution of baculoviruses. Annu Rev Entomol 48: 211-234.
23. Hilton S, Winstanley D (2007) Identification and functional analysis of the origins of DNA replication in the Cydia pomonella granulovirus genome. J Gen Virol 88: 1496-1504.
24. Hilton S, Winstanley D (2008) Genomic sequence and biological characterization of a nucleopolyhedrovirus isolated from the summer fruit tortrix, Adoxophyes orana. J Gen Virol 89: 2898-2908.
25. Hu ZH, Arif BM, Jin F, Martens JWM, Chen XW, Sun JS, Zuidema D, Goldbach RW, Vlak JM (1998) Distinct gene arrangement in the Buzura suppressaria single-nucleocapsid nucleopolyhedrovirus genome. J Gen Virol 79: 2841-2851.
26. Hyink O, Dellow RA, Olsen MJ, Caradoc-Davies KMB, Drake K, Herniou EA, Cory JS, O'Reilly DR, Ward VK (2002) Whole genome analysis of the Epiphyas postvittana nucleopolyhedrovirus. J Gen Virol 83: 957-971.
27. Ijkel WFJ, van Strien EA, Heldens JGM, Broer R, Zuidema D, Goldbach RW, Vlak JM (1999) Sequence and organization of the Spodoptera exigua multicapsid nucleopolyhedrovirus genome. J Gen Virol 80: 3289-3304.
28. Ikeda M, Yanagimoto K, Kobayashi M (2004) Identification and functional analysis of Hyphantria cunea nucleopolyhedrovirus iap genes. Virology 321: 359-371.
29. Jehle JA, Blissard GW, Bonning BC, Cory JS, Herniou EA, Rohrmann GF, Theilmann DA, Thiem SM, Vlak JM (2006) On the classification and nomenclature of baculoviruses: a proposal for revision. Arch Virol 151: 1257-1266.
30. Kuzio J, Pearson MN, Harwood SH, Funk CJ, Evans JT, Slavicek JM, Rohrmann George F (1999) Sequence and analysis of the genome of a baculovirus pathogenic for Lymantria dispar. Virology 253: 17-34.
31. Lange M, Jehle JA (2003) The genome of Cryptophlebia leucotreta granulovirus. Virology 317: 220-236.
32. Lauzon HA, Lucarotti CJ, Krell PJ, Feng Q, Retnakaran A, Arif BM (2004) Sequence and organization of the Neodiprion lecontei nucleopolyhedrovirus genome. J Virol 78: 7023-7035.
33. Lu A, Krell P, Vlak J, Rohrmann G (1997) Baculovirus DNA replication. In: Miller LK (ed) The baculoviruses. Plenum, New York, pp 171-192.
34. Lu A, Miller LK (1997) Regulation of baculovirus late and very late gene expression. In: Miller LK (ed) The baculoviruses. Plenum, New York, pp 193-216.
35. Luque T, Finch R, Crook N, O'Reilly DR, Winstanley D (2001) The complete sequence of Cydia pomonella granulovirus genome. J Gen Virol 82: 2531-2547.
36. Lung OY, Cruz-Alvarez M, Blissard GW (2003) Ac23, an envelope fusion protein homolog in the baculovirus Autographa californica multicapsid nucleopolyhedrovirus, is a viral pathogenicity factor. J Virol 77: 328-339.
37. McCarthy CB, Theilmann DA (2008) AcMNPV ac143 (odv-e18) is essential for mediating budded virus production and is the 30th baculovirus core gene. Virology 375: 277-291.
38. Morris TD, Lk Miller (1994) Mutational analysis of a baculovirus major late promoter. Gene 140: 147-153.
39. Morris TD, Todd JW, Fisher B, Miller LK (1994) Identification of lef-7: a baculovirus gene affecting late gene expression. Virology 200: 360-369.
40. Moscardi F (1999) Assessment of the applications of baculoviruses for control of Lepidoptera. Annu Rev Entomol 44: 257-289.
41. Nakai M, Goto C, Kang WK, Shikata M, Luque T, Kunimi Y (2003) Genome sequence and organization of a nucleopolyhedrovirus isolated from the smaller tea tortrix, Adoxophyes honmai. Virology 316: 171-183.
42. O'Reilly DR (1997) Auxiliary genes of baculoviruses. In: Miller LK (ed) The baculoviruses. Plenum, New York, pp 276-300.
43. O'Reilly DR, Miller LK (1991) Improvement of a baculovirus pesticide by deletion of the EGT Gene. Nat Biotechnol 9: 1086-1089.
44. Pearson MN, Russell RLQ, Rohrmann GF (2002) Functional analysis of a conserved region of the baculovirus envelope fusion protein, LD130. Virology 304: 81-88.
45. Pham DQ, Hicea RH, Sivasubramaniana N, Federicia BA (1993) The 1629-bp open reading frame of the Autographa californica multinucleocapsid nuclear polyhedrosis virus encodes a virion structural protein. Gene 137: 275-280.
46. Pham DQ, Sivasubramaniana N (1992) Sequence and in vitro translational analysis of a 1629-nucleotide ORF in Autographa californica nuclear polyhedrosis virus strain E2. Gene 122: 345-348.
47. Possee RD, Sun TP, Howarda SC, Ayresa MD, Michéle HP, Gearing KL (1991) Nucleotide sequence of the Autographa californica nuclear polyhedrosis 9. 4 kbp EcoRI-I and -R (Polyhedrin gene) region. Virology 185: 229-241.
48. Rapp JC, Wilson JA, Miller LK (1998) Nineteen baculovirus open reading frames, including LEF-12, support late gene expression. J Virol 72: 10197-10206.
49. Slack JM, Kuzio J, Faulkner P (1995) Characterization of v-cath, a cathepsin L-like proteinase expressed by the baculovirus Autographa californica multiple nuclear polyhedrosis virus. J Gen Virol 76: 1091-1098.
50. Theilmann DA, Stewart S (1992) Tandemly repeated sequence at the 3' end of the IE-2 gene of the baculovirus Orgyia pseudosugata multicapsid nuclear polyhedrosis virus is an enhancer element. Virology 187: 97-106.
51. van OMM, Vlak JM (1997) The baculovirus 10-kDa protein. J Inverteb Pathol 70: 1-17.
52. Vaux DL, Strasser A (1996) The molecular biology of apoptosis. Proc Natl Acad Sci USA 93: 2239-2244.
53. Vucic D, Kaiser WJ, Harvey AJ, Miller LK (1997) Inhibition of reaper-induced apoptosis by interaction with inhibitor of apoptosis proteins (IAPs). Proc Natl Acad Sci USA 94: 10183-10188.
54. Westenberg M, Veenman F, Roode EC, Goldbach RW, Vlak JM, Zuidema D (2004) Functional analysis of the putative fusion domain of the baculovirus envelope fusion protein F. J Virol 78: 6946-6954.
55. Westenberg M, Wang HL, IJkel WFJ, Goldbach RW, Vlak JM, Zuidema D (2002) Furin is involved in baculovirus envelope fusion protein activation. J Virol 76: 178-184.
56. Williams GV, Rohel DZ, Kuzio J, Faulkner P (1989) A cytopathological investigation of Autographa californica nuclear polyhedrosis virus p10 gene function using insertion/deletion mutants. J Gen Virol 70: 187-202.
57. Winstanley D, Crook NE (1993) Replication of Cydia pomonella granulosis virus in cell cultures. J Gen Virol 74: 1599-1609.
58. Wormleaton S, Kuzio J, Winstanley D (2003) The complete sequence of the Adoxophyes orana granulovirus genome. Virology 311: 350-365.
59. Zhang D, Zhang Z, Yang K, Li B (2004) Genetic mapping in (Populus tomentosa×Populus bolleana) and P. tomentosa Carr. using AFLP markers. Theor Appl Genet 108: 657-662.
60. Zhang XX, Liang ZP, Peng HY, Zhang ZX, Tang XC, Liu TQ (2005) Characterization and partial genome sequence analysis of Clostera anachoreta granulovirus. Virus Res 113: 36-43.
61. Zhang XX, Liang ZP, Peng HY, Zhang ZX, Tang XC, Zhao SL, Xiao YZ, Zhang WJ (2006) Location and phylogenetic analysis of the region immediately upstream of the granulin gene of the Clostera anachoreta granulovirus. Virus Res 121: 97-102.