Identification and functional analysis of the origins of DNA replication in the Cydia pomonella granolovirus genome

Journal of General Virology

Volumn 88, Issue 5, 2007, Pages 1496-1504

  Hilton, Sally ^a   Winstanley, Doreen ^a  

^a UNIVERSITY OF WARWICK   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

PALINDROMIC DNA; VIRUS DNA;

ARTICLE; CELL LINE; DNA REPLICATION; DNA REPLICATION ORIGIN; GRANULOVIRUS; HYBRIDIZATION; INVERTED REPEAT; NONHUMAN; PLASMID; PRIORITY JOURNAL; QUANTITATIVE ASSAY; REAL TIME POLYMERASE CHAIN REACTION; SOUTHERN BLOTTING; VIRAL GENETICS; VIRUS GENOME; VIRUS IDENTIFICATION;

ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; DNA PRIMERS; DNA REPLICATION; DNA, VIRAL; GENOME, VIRAL; GRANULOVIRUS; PLASMIDS; POLYMERASE CHAIN REACTION; REPLICATION ORIGIN; RESTRICTION MAPPING; SPODOPTERA;

CYDIA POMONELLA; CYDIA POMONELLA GRANULOVIRUS; GRANULOVIRUS;

EID: 34248188789     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.82760-0     Document Type: Article

References (51)

1. Ahrens, C. H., Pearson, M. N. & Rohrmann, G. F. (1995). Identification and characterization of a second putative origin of DNA replication in a baculovirus of Orgyia pseudotsugata. Virology 207, 572-576.
2. Broer, R., Heldens, J. G. M., van Strien, E. A., Zuidema, D. & Vlak, J. M. (1998). Specificity of multiple homologous genomic regions in Spodoptera exigua nucleopolyhedrovirus DNA replication. J Gen Virol 79, 1563-1572.
3. Carson, D. D., Summers, M. D. & Guarino, L. A. (1991). Transient expression of the Autographa californica nuclear polyhedrosis virus immediate-early gene, ie-n, is regulated by 3 viral elements. J Virol 65, 945-951.
4. Chen, X., Zhang, W. J., Wong, J., Chun, G., Lu, A., McCutchen, B. F., Presnail, J. K., Herrmann, R., Dolan, M. & other authors (2002). Comparative analysis of the complete genome sequences of Helicoverpa zea and Helicoverpa armigera single-nucleocapsid nucleopolyhedroviruses. J Gen Virol 83, 673-684.
5. Cochran, M. A. & Faulkner, P. (1983). Location of homologous DNA-sequences interspersed at 5 regions in the baculovirus AcMNPV genome. J Virol 45, 961-970.
6. Crook, N. E., Spencer, R. A., Payne, C. C. & Leisy, D. J. (1985). Variation in Cydia pomonella granulosis virus isolates and physical maps of the DNA from three variants. J Gen Virol 66, 2423-2430.
7. Crook, N. E., James, J. D., Smith, I. R. L. & Winstanley, D. (1997). Comprehensive physical map of the Cydia pomonella granulovirus genome and sequence analysis of the granulin gene region. J Gen Virol 78, 965-974.
8. s region of herpes-simplex virus type-1 encodes origin function. J Virol 62, 2516-2519.
9. Escasa, S. R., Lauzon, H. A. M., Mathur, A. C., Krell, P. J. & Arif, B. M. (2006). Sequence analysis of the Choristoneura occidentalis granulovirus genome. J Gen Virol 87, 1917-1933.
10. Geier, G. E. & Modrich, P. (1979). Recognition sequence of the dam methylase of Escherichia coli k12 and mode of cleavage of DpnI endonuclease. J Biol Chem 254, 1408-1413.
11. Guarino, L. A. & Summers, M. D. (1986). Interspersed homologous DNA of Autographa californica nuclear polyhedrosis virus enhances delayed-early gene expression. J Virol 60, 215-223.
12. Habib, S. & Hasnain, S. E. (1996). A 38-kDa host factor interacts with functionally important motifs within the Autographa californica multinucleocapsid nuclear polyhedrosis virus homologous region ( hr1) DNA sequence. J Biol Chem 271, 28250-28258.
13. Habib, S. & Hasnain, S. E. (2000). Differential activity of two non-hr origins during replication of the baculovirus Autographa californica nuclear polyhedrosis virus genome. J Virol 74, 5182-5189.
14. Harrison, R. L. & Bonning, B. C. (2003). Comparative analysis of the genomes of Rachiplusia ou and Autographa californica multiple nucleopolyhedroviruses. J Gen Virol 84, 1827-1842.
15. Hashimoto, Y., Hayakawa, T., Ueno, Y., Fujita, T., Sano, Y. & Matsumoto, T. (2000). Sequence analysis of the Plutella xylostella granulovirus genome. Virology 275, 358-372.
16. Heldens, J. G., Broer, R., Zuidema, D., Goldbach, R. W. & Vlak, J. M. (1997). Identification and functional analysis of a non-hr origin of DNA replication in the genome of Spodoptera exigua multicapsid nucleopolyhedrovirus. J Gen Virol 78, 1497-1506.
17. Huang, J. & Levin, D. B. (2001). Expression, purification and characterization of the Spodoptera littoralis nucleopolyhedrovirus (SpliNPV) DNA polymerase and interaction with the SpliNPV non-hr origin of DNA replication. J Gen Virol 82, 1767-1776.
18. Jehle, J. A. (2002). The expansion of a hypervariable, non-hr on-like region in the genome of Cryptophlebia leucotreta granulovirus provides in vivo evidence for the utilization of baculovirus non-hr oris during replication. J Gen Virol 83, 2025-2034.
19. Jehle, J. A., Fritsch, E., Nickel, A., Huber, J. & Backhaus, H. (1995). TC14.7 - a novel lepidopteran transposon found in Cydia pomonella granulosis virus. Virology 207, 369-379.
20. Kool, M., Voncken, J. W., Vanlier, F. L. J., Tramper, J. & Vlak, J. M. (1991). Detection and analysis of Autographa californica nuclear polyhedrosis-virus mutants with defective interfering properties. Virology 183, 739-746.
21. Kool, M., Goldbach, R. W. & Vlak, J. M. (1994). A putative non- hr origin of DNA replication in the HindIII-K fragment of Autographa californica multiple nucleocapsid nuclear polyhedrosis virus. J Gen Virol 75, 3345-3352.
22. Kool, M., Ahrens, C. H., Vlak, J. M. & Rohrmann, G. F. (1995). Replication of baculovirus DNA. J Gen Virol 76, 2103-2118.
23. Lange, M. & Jehle, J. A. (2003). The genome of the Cryptophlebia leucotreta granulovirus. Virology 317, 220-236.
24. Leisy, D. J. & Rohrmann, G. F. (1993). Characterization of the replication of plasmids containing hr sequences in baculovirus-infected Spodoptera frugiperda cells. Virology 196, 722-730.
25. Leisy, D. J., Rasmussen, C., Kim, H.-T. & Rohrmann, G. F. (1995). The Autographa californica nuclear polyhedrosis virus homologous region 1a: identical sequences are essential for DNA replication activity and transcriptional enhancer function. Virology 208, 742-752.
26. Li, L., Donly, C., Li, Q. J., Willis, L. G., Keddie, B. A., Erlandson, M. A. & Theilmann, D. A. (2002). Identification and genomic analysis of a second species of nucleopolyhedrovirus isolated from Mamestra configurata. Virology 297, 226-244.
27. L2, a large palindromic DNA-replication origin of herpes simplex virus type-2. J Virol 58, 513-521.
28. Lockshon, D. & Galloway, D. A. (1988). Sequence and structural requirements of a herpes simplex viral-DNA replication origin. Mol Cell Biol 8, 4018-4027.
29. Lu, A. & Carstens, E. B. (1993). Immediate-early baculovirus genes transactivate the p143 gene promoter of Autographa californica nuclear polyhedrosis-virus. Virology 195, 710-718.
30. Luque, T., Finch, R., Crook, N., O'Reilly, D. R. & Winstanley, D. (2001). The complete sequence of Cydia pomonella granulovirus genome. J Gen Virol 82, 2531-2547.
31. Nissen, M. S. & Friesen, P. D. (1989). Molecular analysis of the transcriptional regulatory region of an early baculovirus gene. J Virol 63, 493-503.
32. Pearson, M. N. & Rohrmann, G. F. (1995). Lymantria dispar nuclear polyhedrosis-virus homologous regions - characterization of their ability to function as replication origins. J Virol 69, 213-221.
33. Pearson, M., Bjornson, R., Pearson, G. & Rohrmann, G. (1992). The Autographa californica baculovirus genome - evidence for multiple replication origins. Science 257, 1382-1384.
34. Pearson, M. N., Bjornson, R. M., Ahrens, C. & Rohrmann, G. F. (1993). Identification and characterization of a putative origin of DNA-replication in the genome of a baculovirus pathogenic for Orgyia pseudotsugata. Virology 197, 715-725.
35. Pearson, C. E., Zorbas, H., Price, G. B. & Zannis-Hadjopoulos, M. (1996). Inverted repeats, stem-loops, and cruciforms: significance for initiation of DNA replication. J Cell Biochem 63, 1-22.
36. Peden, K. W. C., Pipas, J. M., Pearsonwhite, S. & Nathans, D. (1980). Isolation of mutants of an animal virus in bacteria. Science 209, 1392-1396.
37. Pijlman, G. P., van den Born, E., Martens, D. E. & Vlak, J. M. (2001). Autographa californica baculoviruses with large genomic deletions are rapidly generated in infected insect cells. Virology 283, 132-138.
38. Pijlman, G. P., Dortmans, J. C. F. M., Vermeesch, A. M. G., Yang, K., Martens, D. E., Goldbach, R. W. & Vlak, J. M. (2002). Pivotal role of the non-hr origin of DNA replication in the genesis of defective interfering baculoviruses. J Virol 76, 5605-5611.
39. Possee, R. D. & Rohrmann, F. (1997). Baculovirus genome organization and evolution. In The Baculoviruses, pp. 109-140. Edited by L. K. Miller. New York: Plenum Press.
40. Rasmussen, C., Leisy, D. J., Ho, P. S. & Rohrmann, G. F. (1996). Structure-function analysis of the Autographa californica multinucleocapsid nuclear polyhedrosis virus homologous region palindromes. Virology 224, 235-245.
41. Rodems, S. M. & Friesen, P. D. (1995). Transcriptional enhancer activity of hr5 requires dual-palindrome half sites that mediate binding of a dimeric form of the baculovirus transregulator ie1. J Virol 69, 5368-5375.
42. Theilmann, D. A. & Stewart, S. (1991). Identification and characterization of the ie-1 gene of Orgyia pseudotsugata multicapsid nuclear polyhedrosis virus. Virology 180, 492-508.
43. Theilmann, D. A. & Stewart, S. (1992). Tandemly repeated sequence at the 3′ end of the IE-2 gene of the baculovirus Orgyia pseudotsugata multicapsid nuclear polyhedrosis-virus is an enhancer element. Virology 187, 97-106.
44. Theilmann, D. A., Blissart, G. W., Bonning, B., Jehle, J., O'Reilly, D. R., Rohrmann, G. F., Thiem, S., &, Vlak, J. M. (2005). Baculoviridae. In Virus Taxonomy, Eighth Report of the International Committee on Taxonomy of Viruses, pp. 177-185. Edited by C. M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger & L. A. Ball. London: Elsevier/Academic Press.
45. Viswanathan, P., Venkaiah, B., Kumar, M. S., Rasheedi, S., Vrati, S., Bashyam, M. D. & Hasnain, S. E. (2003). The homologous region sequence (hr1) of Autographa californica multinucleocapsid polyhedrosis virus can enhance transcription from non-baculoviral promoters in mammalian cells. J Biol Chem 278, 52564-52571.
46. L, a herpes-simplex virus type-1 origin of DNA-synthesis. Mol Cell Biol 5, 930-942.
47. Williams, D. L. & Kowalski, D. (1993). Easily unwound DNA-sequences and hairpin structures in the Epstein-Barr virus origin of plasmid replication. J Virol 67, 2707-2715.
48. Winstanley, D. & Crook, N. E. (1993). Replication of Cydia pomonella granulosis virus in cell cultures. J Gen Virol 74, 1599-1609.
49. Wormleaton, S. L. (2000). Molecular and biological studies of fast and slow killing granuloviruses. PhD thesis, University of Warwick.
50. Wormleaton, S., Kuzio, J. & Winstanley, D. (2003). The complete sequence of the Adoxophyes orana granulovirus genome. Virology 311, 350-365.
51. Xie, W. D., Arif, B., Dobos, P. & Krell, P. J. (1995). Identification and analysis of a putative origin of DNA-replication in the Choristoneura fumiferana multinucleocapsid nuclear polyhedrosis-virus genome. Virology 209, 409-419.