Quantitative Neuromorphometry Using Magnetic Resonance Histology

Toxicologic Pathology

Volumn 39, Issue 1, 2011, Pages 85-91

  Allan Johnson, G ^a   Badea, Alexandra ^a   Jiang, yi ^a  

^a DUKE UNIVERSITY   (United States)

Author keywords

contrast agents; magnetic resonance histology; magnetic resonance imaging; magnetic resonance microscopy; neuroimaging; neuromorphometry

Indexed keywords

CONTRAST MEDIUM;

ANIMAL; ANIMAL MODEL; ARTICLE; BRAIN; COMPUTER PROGRAM; HISTOLOGY; HUMAN; LABORATORY DIAGNOSIS; METABOLISM; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE IMAGING; STAINING; THREE DIMENSIONAL IMAGING;

ANIMALS; BRAIN; CONTRAST MEDIA; HUMANS; IMAGING, THREE-DIMENSIONAL; MAGNETIC RESONANCE IMAGING; MODELS, ANIMAL; SOFTWARE; SPECIMEN HANDLING; STAINING AND LABELING;

EID: 79959522658     PISSN: 01926233     EISSN: 15331601     Source Type: Journal    
DOI: 10.1177/0192623310389622     Document Type: Article

References (31)

1. Aguayo J. B. Blackband S. J. Schoeniger J. Mattingly M. A. Hintermann M. (1986). Nuclear magnetic resonance imaging of a single cell. Nature 322, 190–91.
2. Ali A. A. Dale A. M. Badea A. Johnson G. A. (2005). Automated segmentation of neuroanatomical structures in multispectral MR microscopy of the mouse brain. Neuroimage 27, 425–35.
3. Badea A. Ali-Sharief A. Dale A. M. Johnson G. A. (2007). Morphometric analysis of the C57BL/6J mouse brain. Neuroimage 37, 683–93.
4. Badea A. Johnson G. A. Jankowsky J. L. (2010). Remote sites of structural atrophy predict later amyloid formation in a mouse model of Alzheimer’s disease. Neuroimage 50, 416–27.
5. Badea A. Johnson G. A. Williams R. (2009). Genetic dissection of the mouse CNS using magnetic resonance microscopy. Current Opin Neurol 22, 379–86.
6. Badea A. Williams R. W. Johnson G. A. (2009). Genetic dissection of the mouse brain using high-field magnetic resonance microscopy. Neuroimage 45, 1067–79. (Supplement available from www.civm.duhs.duke.edu/bxd/index.html.).
7. Bernstein M. A. King K. F. Zhou X. J. (2004). Handbook of MRI Pulse Sequences. Elsevier Academic, San Diego, CA.
8. Callaghan P. T. (1994). Principles of Nuclear Magnetic Resonance Microscopy. Oxford University Press, Oxford, UK.
9. Cyr M. Caron M. G. Johnson G. A. Laakso A. (2005). Magnetic resonance imaging at microscopic resolution reveals subtle morphological changes in a mouse model of dopaminergic hyperfunction. Neuroimage 26, 83–90.
10. Dockery S. E. Suddarth S. A. Johnson G. A. (1989). Relaxation measurements at 300 MHz using MR microscopy. Magn Reson Med 11, 182–92.
11. Eccles C. D. Callaghan P. T. (1986). High resolution imaging: the NMR microscope. J Magn Reson 68, 393–98.
12. Haacke E. M. Brown R. W. Thompson M. R. Venkatesan R. (1999). Magnetic Resonance Imaging: Physical Principles and Sequence Design. Wiley-Liss, New York, NY.
13. Himes N. Min J. Y. Lee R. Brown C. Shea J. Huang X. Xiao Y. F. Morgan J. P. Burstein D. Oettgen P. (2004). In vivo MRI of embryonic stem cells in a mouse model of myocardial infarction. Magn Reson Med 52, 1214–19.
14. Johnson G. A. Ali-Sharief A. Badea A. Brandenburg J. Cofer G. Fubara B. Gewalt S. Hedlund L. W. Upchurch L. (2007). High-throughput morphologic phenotyping of the mouse brain with magnetic resonance histology. Neuroimage 37, 82–89.
15. Johnson G. A. Badea A. Brandenburg J. Cofer G. Fubara B. Liu S. Nissanov J. (2010). Waxholm Space: An image-based reference for coordinating mouse brain research. Neuroimage 53, 365–72.
16. Johnson G. A. Benveniste H. Black R. D. Hedlund L. W. Maronpot R. R. Smith B. R. (1993). Histology by magnetic resonance microscopy. Magn Reson Quarterly 9, 1–30.
17. Johnson G. A. Cofer G. P. Fubara B. Gewalt S. L. Hedlund L. W. Maronpot R. R. (2002). Magnetic resonance histology for morphologic phenotyping. J Magn Reson Imaging 16, 423–29.
18. Johnson G. A. Herfkens R. J. Brown M. A. (1985). Tissue relaxation time: in vivo field dependence. Radiology 156, 805–10.
19. Johnson G. A. Thompson M. B. Gewalt S. L. Hayes C. E. (1986). Nuclear magnetic resonance imaging at microscopic resolution. J Magn Reson 68, 129–37.
20. Lauterbur P. C. (1973). Image formation by induced local interactions—examples employing nuclear magnetic resonance. Nature 242, 190–91.
21. Lester D. S. Johannessen J. N. Pine P. S. McGregor G. N. Johnson G. A. (1999). Virtual neuropathology: A new approach to preclinical pathology using magnetic resonance imaging microscopy. Spectroscopy 14, 17–22.
22. Lester D. S. Pine P. S. Delnomdedieu M. Johannessen J. N. Johnson G. A. (2000). Virtual neuropathology: three-dimensional visualization of lesion due to toxic insult. Toxicol Pathol 28, 100–104.
23. Malisch T. W. Hedlund L. W. Suddarth S. A. Johnson G. A. (1991). MR microscopy at 7 T: the effects of brain iron. J Magn Reson Imaging 1, 301–5.
24. Mansfield P. Grannell P. K. (1975). Diffraction in microscopy in solids and liquids by NMR. Phys Rev B 12, 3618–34.
25. Maronpot R. R. Sills R. C. Johnson G. A. (2004). Applications of magnetic resonance microscopy. Toxicol Pathol 32, 42–48.
26. Morgan D. L. Little P. B. Herr D. W. Moser V. C. Collins B. Herbert R. Johnson G. A. Maronpot R. R. Harry G. J. Sills R. C. (2004). Neurotoxicity of carbonyl sulfide in F344 rats following inhalation exposure for up to 12 weeks. Toxicol and Appl Pharmacol 200, 131–45.
27. Petiet A. E. Kaufman M. H. Goddeeris M. M. Brandenburg J. Elmore S. A. Johnson G. A. (2008). High-resolution magnetic resonance histology of the embryonic and neonatal mouse: a 4D atlas and morphologic database. Proc Natl Acad Sci U S A 105, 12331–36.
28. Sharief A. A. Johnson G. A. (2006). Enhanced T2 contrast for MR histology of the mouse brain. Magn Reson Med 56, 717–25.
29. Sills R. C. Morgan D. L. Herr D. W. Little P. B. George N. M. Ton T. V. Love N. E. Maronpot R. R. Johnson G. A. (2004). Contribution of magnetic resonance microscopy in the 12-week neurotoxicity evaluation of carbonyl sulfide in Fischer 344 rats. Toxicol Pathol 32, 501–10.
30. Suddarth S. A. Johnson G. A. (1991). Three-dimensional MR microscopy with large arrays. Magn Reson Med 18, 132–41.
31. Wehrli F. Shaw D. Kneeland J. (1988). Biomedical Magnetic Resonance Imaging: Principles, Methodology, and Applications. VCH, New York, NY.