Phylogenetic analysis of complete VP1 sequences of echoviruses 11 and 6: High genetic diversity and circulation of genotypes with a wide geographical and temporal range

Journal of Medical Microbiology

Volumn 60, Issue 7, 2011, Pages 1017-1025

  Fares, Wasfi ^a   Rezig, Dorra ^a   Seghier, Mohamed ^b   Yahia, Ahlem Ben ^a   Touzi, Henda ^a   Triki, Henda ^a  

^a PASTEUR INSTITUTE OF TUNIS   (Tunisia)

^b Institut Pasteur d'Algerie   (Algeria)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ECHO VIRUS; GENE SEQUENCE; GENETIC VARIABILITY; GENOTYPE; NONHUMAN; NORTH AFRICA; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; VIRAL GENETICS; VIRUS GENE; VIRUS ISOLATION; VIRUS STRAIN;

AFRICA, NORTHERN; CAPSID PROTEINS; ECHOVIRUS INFECTIONS; ENTEROVIRUS B, HUMAN; GENETIC VARIATION; GENOTYPE; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY;

EID: 79959509647     PISSN: 00222615     EISSN: None     Source Type: Journal    
DOI: 10.1099/jmm.0.028795-0     Document Type: Article

References (40)

1. Abe, O., Kimura, H., Minakami, H., Akami, M., Inoue, M., Saito, A. & Otsuki, K. (2000). Outbreak of gastroenteritis caused by echovirus type 6 in an orphanage in Japan. J Infect 41, 285-286.
2. Ashwell, M. J., Smith, D. W., Phillips, P. A. & Rouse, I. L. (1996). Viral meningitis due to echovirus types 6 and 9: epidemiological data from Western Australia. Epidemiol Infect 117, 507-512.
3. Atkinson, P. J., Sharland, M. & Maguire, H. (1998). Predominant enteroviral serotypes causing meningitis. Arch Dis Child 78, 373-374.
4. Bahri, O., Rezig, D., Nejma-Oueslati, B. B., Yahia, A. B., Sassi, J. B., Hogga, N., Sadraoui, A. & Triki, H. (2005). Enteroviruses in Tunisia: virological surveillance over 12 years (1992-2003). J Med Microbiol 54, 63-69.
5. Bailly, J. L., Chambon, M., Henquell, C., Icart, J. & Peigue-Lafeuille, H. (2000). Genomic variations in echovirus 30 persistent isolates recovered from a chronically infected immunodeficient child and comparison with the reference strain. J Clin Microbiol 38, 552-557.
6. Belguith, K., Hassen, A., Bouslama, L., Khira, S. & Aouni, M. (2007a). Enterovirus circulation in wastewater and behavior of some serotypes during sewage treatment in Monastir, Tunisia. J Environ Health 69, 52-56.
7. Belguith, K., Bouslama, L., Sdiri, K., Nsaibia, S. & Ouni, M. (2007b). [Genotypes of echovirus 6 in Monastir region]. Pathol Biol (Paris) 55, 316-322 (in French).
8. Bouslama, L., Rezig, D., Ben Yahia, A., Aouni, M. & Triki, H. (2007). Phylogenetic analysis of echovirus 11 in the 39 end of the VP1. Intervirology 50, 108-114.
9. Boyd, M. T., Jordan, S. W. & Davis, L. E. (1987). Fatal pneumonitis from congenital echovirus type 6 infection. Pediatr Infect Dis J 6, 1138-1139.
10. Brown, B. A., Oberste, M. S., Alexander, J. P., Jr, Kennett, M. L. & Pallansch, M. A. (1999). Molecular epidemiology and evolution of enterovirus 71 strains isolated from 1970 to 1998. J Virol 73, 9969-9975.
11. Cabrerizo, M., Echevarria, J. E., González, I., deMiguel, T. & Trallero, G. (2008). Molecular epidemiological study of HEV-B enteroviruses involved in the increase in meningitis cases occurred in Spain during 2006. J Med Virol 80, 1018-1024.
12. Caro, V., Guillot, S., Delpeyroux, F. & Crainic, R. (2001). Molecular strategy for 'serotyping' of human enteroviruses. J Gen Virol 82, 79-91.
13. Chomel, J. J., Antona, D., Thouvenot, D. & Lina, B. (2003). Three ECHOvirus serotypes responsible for outbreak of aseptic meningitis in Rhône-Alpes region, France. Eur J Clin Microbiol Infect Dis 22, 191-193.
14. Druyts-Voets, E. (1997). Epidemiological features of entero nonpoliovirus isolations in Belgium 1980-94. Epidemiol Infect 119, 71-77.
15. El-Sageyer, M. M., Szendröi, A., Hütter, E., Uj, M., Szücs, G., Mezey, I., Tóth, I., Kátai, A., Kapiller, Z. & other authors (1998). Characterisation of an echovirus type 119 (prime) epidemic strain causing haemorrhagic syndrome in newborn babies in Hungary. Acta Virol 42, 157-166.
16. Joo, C. H., Ahn, J., Seo, I., Kim, Y. K., Kim, D., Hong, H. & Lee, H. (2005). Characterization of nonpolio enteroviruses recovered from patients with aseptic meningitis in Korea. Intervirology 48, 97-103.
17. Kew, O. M., Mulders, M. N., Lipskayat, G. Y., Da Silva, E. E. & Pallansch, M. A. (1995). Molecular epidemiology of polioviruses. Semin Virology 6, 401-414.
18. Khetsuriani, N., LaMonte-Fowlkes, A., Oberst, S. & Pallansch, M. A. (2006). Enterovirus surveillance-United States, 1970-2005. MMWR Surveill Summ 55, 1-20.
19. Lin, K.-H., Chern, C.-L., Chu, P.-Y., Chang, C.-H., Wang, H.-L., Sheu, M.-M., Huang, W.-L., Pongsuwanna, Y., Yamamoto, S. & other authors (2001). Genetic analysis of recent Taiwanese isolates of a variant of coxsackievirus A24. J Med Virol 64, 269-274.
20. Lukashev, A. N., Ivanova, O. E., Eremeeva, T. P. & Gmyl, L. V. (2008). Analysis of echovirus 30 isolates from Russia and new independent states revealing frequent recombination and reemergence of ancient lineages. J Clin Microbiol 46, 665-670.
21. Mao, N., Zhao, L., Zhu, Z., Chen, X., Zhou, S., Zhang, Y., Cui, A., Ji, Y., Xu, S. & Xu, W. (2010). An aseptic meningitis outbreak caused by echovirus 6 in Anhui province, China. J Med Virol 82, 441-445.
22. McWilliam Leitch, E. C., Cabrerizo, M., Cardosa, J., Harvala, H., Ivanova, O. E., Kroes, A. C., Lukashev, A., Muir, P., Odoom, J. & other authors (2010). Evolutionary dynamics and temporal/geographical correlates of recombination in the human enterovirus echovirus types 9, 11, and 30. J Virol 84, 9292-9300.
23. Mirand, A., Henquell, C., Archimbaud, C., Chambon, M., Charbonne, F., Peigue-Lafeuille, H. & Bailly, J. L. (2008). Prospective identification of enteroviruses involved in meningitis in 2006 through direct genotyping in cerebrospinal fluid. J Clin Microbiol 46, 87-96.
24. Miwa, C. & Sawatari, S. (1994). [Epidemic of aseptic meningitis with echovirus type 6 in Gifu prefecture in 1992]. Kansenshogaku Zasshi 68, 1063-1067 (in Japanese).
25. pro cleavage site: evidence for high genomic diversity and long-term endemicity of distinct genotypes. J Gen Virol 81, 803-812.
26. Norder, H., Bjerregaard, L. & Magnius, L. O. (2001). Homotypic echoviruses share aminoterminal VP1 sequence homology applicable for typing. J Med Virol 63, 35-44.
27. Oberste, M. S., Maher, K., Kilpatrick, D. R., Flemister, M. R., Brown, B. A. & Pallansch, M. A. (1999a). Typing of human enteroviruses by partial sequencing of VP1. J Clin Microbiol 37, 1288-1293.
28. Oberste, M. S., Maher, K., Kilpatrick, D. R. & Pallansch, M. A. (1999b). Molecular evolution of the human enteroviruses: correlation of serotype with VP1 sequence and application to picornavirus classification. J Virol 73, 1941-1948.
29. Oberste, M. S., Maher, K., Kennett, M. L., Campbell, J. J., Carpenter, M. S., Schnurr, D. & Pallansch, M. A. (1999c). Molecular epidemiology and genetic diversity of echovirus type 30 (E30): genotypes correlate with temporal dynamics of E30 isolation. J Clin Microbiol 37, 3928-3933.
30. Oberste, M. S., Maher, K., Flemister, M. R., Marchetti, G., Kilpatrick, D. R. & Pallansch, M. A. (2000). Comparison of classic and molecular approaches for the identification of untypeable enteroviruses. J Clin Microbiol 38, 1170-1174.
31. Oberste, M. S., Nix, W. A., Kilpatrick, D. R., Flemister, M. R. & Pallansch, M. A. (2003). Molecular epidemiology and type-specific detection of echovirus 11 isolates from the Americas, Europe, Africa, Australia, southern Asia and the Middle East. Virus Res 91, 241-248.
32. Oberste, M. S., Maher, K., Williams, A. J., Dybdahl-Sissoko, N., Brown, B. A., Gookin, M. S., Peñaranda, S., Mishrik, N., Uddin, M. & Pallansch, M. A. (2006). Species-specific RT-PCR amplification of human enteroviruses: a tool for rapid species identification of uncharacterized enteroviruses. J Gen Virol 87, 119-128.
33. Palacios, G., Casas, I., Tenorio, A. & Freire, C. (2002). Molecular identification of enterovirus by analyzing a partial VP1 genomic region with different methods. J Clin Microbiol 40, 182-192.
34. Papa, A., Skoura, L., Dumaidi, K., Spiliopoulou, A., Antoniadis, A. & Frantzidou, F. (2009). Molecular epidemiology of echovirus 6 in Greece. Eur J Clin Microbiol Infect Dis 28, 683-687.
35. Santti, J., Harvala, H., Kinnunen, L. & Hyypiä, T. (2000). Molecular epidemiology and evolution of coxsackievirus A9. J Gen Virol 81, 1361-1372.
36. Somekh, E., Shohat, T., Handsher, R. & Serour, F. (2001). An outbreak of echovirus 11 in a children's home. Epidemiol Infect 126, 441-444.
37. Triki, H., Rezig, D., Bahri, O., Ben Ayed, N., Ben Yahia, A., Sadraoui, A. & Ayed, S. (2007). Molecular characterisation of a coxsackievirus A24 that caused an outbreak of acute haemorrhagic conjunctivitis, Tunisia 2003. Clin Microbiol Infect 13, 176-182.
38. Ventura, K. C., Hawkins, H., Smith, M. B. & Walker, D. H. (2001). Fatal neonatal echovirus 6 infection: autopsy case report and review of the literature. Mod Pathol 14, 85-90.
39. Wang, J.-R., Tsai, H.-P., Huang, S.-W., Kuo, P.-H., Kiang, D. & Liu, C.-C. (2002). Laboratory diagnosis and genetic analysis of an echovirus 30-associated outbreak of aseptic meningitis in Taiwan in 2001. J Clin Microbiol 40, 4439-4444.
40. WHO (2004). Polio Laboratory Manual, 4th edn. Geneva: World Health Organization.