Molecular epidemiology and type-specific detection of echovirus 11 isolates from the Americas, Europe, Africa, Australia, southern Asia and the Middle East

Virus Research

Volumn 91, Issue 2, 2003, Pages 241-248

  Oberste, M Steven ^a   Nix, William A ^a   Kilpatrick, David R ^a   Flemister, Mary R ^a   Pallansch, Mark A ^a  

^a CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

Author keywords

Echovirus 11; Phylogeny; Serotype specific PCR

Indexed keywords

AFRICA; ARTICLE; AUSTRALIA; ECHO VIRUS; EUROPE; GENETIC VARIABILITY; MIDDLE EAST; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; SOUTH ASIA; VIRUS DETECTION; VIRUS ISOLATION; WESTERN HEMISPHERE;

AFRICA; AMERICAS; ASIA; AUSTRALIA; ENTEROVIRUS B, HUMAN; ENTEROVIRUS INFECTIONS; EPIDEMIOLOGY, MOLECULAR; EUROPE; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SEROTYPING;

ECHOVIRUS; ENTEROVIRUS; HUMAN ECHOVIRUS 11; RNA VIRUSES;

EID: 0037309705     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-1702(02)00291-5     Document Type: Article

References (39)

1. Anonymous. Enterovirus surveillance in Japan, 1982-1999. Inf. Agents Surveill. Rep. 21:2000;212-213.
2. Brown B.A., Kilpatrick D.R., Oberste M.S., Pallansch M.A. Serotype-specific identification of enterovirus 71 by PCR. J. Clin. Virol. 16:1999;107-112.
3. Brown B.A., Oberste M.S., Alexander J.P. Jr, Kennett M.L., Pallansch M.A. Molecular epidemiology and evolution of enterovirus 71 strains isolated from 1970 to 1998. J. Virol. 73:1999;9969-9975.
4. Nonpolio enterovirus surveillance - United States, 1993-1996. MMWR. 46:1997;748-750.
5. Enterovirus surveillance - United States, 1997-1999. MMWR. 49:2000;913-916.
6. Connolly K.J., Hammer S.M. The acute aseptic meningitis syndrome. Infect. Dis. Clin. North Am. 4:1990;599-622.
7. Cramblett H.G., Haynes R.E., Azimi P.H., Hilty M.D., Wilder M.H. Nosocomial infection with Echovirus type 11 in handicapped and premature infants. Pediatrics. 51:1973;603-607.
8. Dahllund L., Nissinen L., Pulli T., Hyttinen V.P., Stanway G., Hyypia T. The genome of echovirus 11. Virus Res. 35:1995;215-222.
9. Druyts-Voets E. Epidemiological features of entero non-poliovirus isolations in Belgium 1980-94. Epidemiol. Infect. 119:1997;71-77.
10. Gharbi J., Bourlet T., Bailly J.L., Gaudin O.G., Aouni M., Pozzetto B. Variations in the recognition of echovirus type 11 strains by a group-specific anti-VP1 monoclonal antibody. J. Clin. Virol. 14:1999;1-8.
11. Hercik L., Huml M., Mimra J., Najemnik J., Prochazka D., Venderova E. Epidemien der Respirationstrakterkrankungen bei Neugeborenen durch ECHO 11-Virus. Zentralblatt Fur Bakteriologie, Parasitenkunde, Infektionskrankheiten Und Hygiene-1-Abt-Medizinisch-Hygienische Bakteriologie. Virusfors. Parasitol-Orig. 213:1970;18-27.
12. Kärber G. Beitrag zur kollektiven behandlung pharmakologischer reihenversuche. Arch. Exp. Pathol. Pharmakol. 162:1931;480-483.
13. Kew O.M., Mulders M.N., Lipskaya G.Y., da Silva E.E., Pallansch M.A. Molecular epidemiology of polioviruses. Sem. Virol. 6:1995;401-414.
14. Kilpatrick D.R., Nottay B., Yang C.F., Yang S.J., Da Silva E., Penaranda S., Pallansch M., Kew O. Serotype-specific identification of polioviruses by PCR using primers containing mixed-base or deoxyinosine residues at positions of codon degeneracy. J. Clin. Microbiol. 36:1998;352-357.
15. Kilpatrick D.R., Quay J., Pallansch M.A., Oberste M.S. Molecular typing of echovirus 30 isolates using degenerate RT-PCR primers. J. Clin. Microbiol. 39:2001;1299-1302.
16. Kishino H., Hasegawa M. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29:1989;170-179.
17. Kurnetz R., Cacciarelli A., Egerer R., Yang S.S. Neonatal infection. J. Pediatr. 99:1981;822-826.
18. Lake A.M., Lauer B.A., Clark J.C., Wesenberg R.L., McIntosh K. Enterovirus infections in neonates. J. Pediatr. 89:1976;787-791.
19. Melnick J.L. Enteroviruses: polioviruses, coxsackieviruses, echoviruses, and newer enteroviruses. Fields B.N., Knipe D.M., Howley P.M., Channock R.M., Melnick J.L., Monath T.P., Roizman B., Straus S.E. Fields Virology. third ed:1996;655-712 Lippincott-Raven, Philadelphia.
20. Melnick J.L., Rennick V., Hampil B., Schmidt N.J., Ho H.H. Lyophilized combination pools of enterovirus equine antisera: preparation and test procedures for the identification of field strains of 42 enteroviruses. Bull. World Health Org. 48:1973;263-268.
21. Modlin J.F. Perinatal echovirus infection: insights from a literature review of 61 cases of serious infection and 16 outbreaks in nurseries. Rev. Infect. Dis. 8:1986;918-926.
22. Modlin J.F. Perinatal echovirus and group B coxsackievirus infections. Clin. Perinatol. 15:1988;233-246.
23. Morens D.M., Pallansch M.A. Epidemiology. Rotbart H.A. Human Enterovirus Infections. 1995;3-23 ASM Press, Washington, DC.
24. Mulders M.N., Salminen M., Kalkkinen N., Hovi T. Molecular epidemiology of coxsackievirus B4 and disclosure of the correct VP1/2A(pro) cleavage site: evidence for high genomic diversity and long-term endemicity of distinct genotypes. J. Gen. Virol. 81:2000;803-812.
25. Nagington J., Wreghittt T.G., Gandy G., Roberton N.R., Berry P.J. Fatal echovirus 11 infections in outbreak in special-care baby unit. Lancet. 2:1978;725-728.
26. Nairn C., Clements G.B. A study of enterovirus isolations in Glasgow from 1977 to 1997. J. Med. Virol. 58:1999;304-312.
27. Oberste M.S., Maher K., Kennett M.L., Campbell J.J., Carpenter M.S., Schnurr D., Pallansch M.A. Molecular epidemiology and genetic diversity of echovirus type 30 (E30): genotype correlates with temporal dynamics of E30 isolation. J. Clin. Microbiol. 37:1999;3928-3933.
28. Oberste M.S., Maher K., Kilpatrick D.R., Flemister M.R., Brown B.A., Pallansch M.A. Typing of human enteroviruses by partial sequencing of VP1. J. Clin. Microbiol. 37:1999;1288-1293.
29. Oberste M.S., Maher K., Kilpatrick D.R., Pallansch M.A. Molecular evolution of the human enteroviruses: correlation of serotype with VP1 sequence and application to picornavirus classification. J. Virol. 73:1999;1941-1948.
30. Oberste M.S., Maher K., Flemister M.R., Marchetti G., Kilpatrick D.R., Pallansch M.A. Comparison of classic and molecular approaches for the identification of 'untypable' enteroviruses. J. Clin. Microbiol. 38:2000;1170-1174.
31. Rico-Hesse R., Pallansch M.A., Nottay B.K., Kew O.M. Geographic distribution of wild type poliovirus type 1 genotypes. Virology. 160:1987;311-322.
32. Santti J., Harvala H., Kinnunen L., Hyypiä T. Molecular epidemiology and evolution of coxsackievirus A9. J. Gen. Virol. 81:2000;1361-1372.
33. Savolainen C., Hovi T., Mulders M.N. Molecular epidemiology of echovirus 30 in Europe: succession of dominant sublineages within a single major genotype. Arch. Virol. 146:2001;521-537.
34. Schmidt N.J., Lennette E.H., Ho H.H. Observations on antigenic variants of echovirus type 11. Proc. Soc. Exp. Biol. Med. 123:1966;696-700.
35. Strikas R.A., Anderson L.J., Parker R.A. Temporal and geographic patterns of isolates of nonpolio enterovirus in the United States, 1970-1983. J. Infect. Dis. 153:1986;346-351.
36. Strimmer K., von Haeseler A. Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13:1996;964-969.
37. Stuart A.D., McKee T.A., Williams P.A., Harley C., Shen S., Stuart D.I., Brown D.K., Lea S.M. Determination of the structure of a decay accelerating factor-binding clinical isolate of echovirus 11 allows mapping of mutants with altered receptor requirements for infection. J. Virol. 76:2002;7694-7704.
38. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight-matrix choice. Nucl. Acids Res. 22:1994;4673-4680.
39. Yang C.-F., De L., Holloway B.P., Pallansch M.A., Kew O.M. Detection and identification of vaccine-related polioviruses by the polymerase chain reaction. Virus Res. 20:1991;159-179.