-
1
-
-
0000353178
-
Amaximizationtechniqueoccurringinthe statistical analysis ofprobabilistic functions ofmarkov chains
-
BAUM,L. E., PETRIE, T., SOULES, G. AND WEISS,N. (1970). Amaximizationtechniqueoccurringinthe statistical analysis ofprobabilistic functions ofmarkov chains. The Annals of Mathematical Statistics 41, 164-170.
-
(1970)
The Annals of Mathematical Statistics
, vol.41
, pp. 164-170
-
-
Bauml, E.1
Petrie, T.2
Soules, G.3
Weiss, N.4
-
2
-
-
1242316281
-
ChIP-chip: Considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments
-
DOI 10.1016/j.ygeno.2003.11.004
-
BUCK, M. J. AND LIEB, J. D. (2004). Ch IP-chip: considerations for the design, analysis, and application ofgenome-wide chromatin immunoprecipitation experiments. Genomics 83, 349-360. (Pubitemid 38220840)
-
(2004)
Genomics
, vol.83
, Issue.3
, pp. 349-360
-
-
Buck, M.J.1
Lieb, J.D.2
-
3
-
-
0003107701
-
Calculating posterior distributions and modal estimates in Markov mixture models
-
DOI 10.1016/0304-4076(95)01770-4
-
CHIB, S. (1996). Calculating posterior distributions and modal estimates in Markov mixture models. Journal of Econometrics 75, 79-97. (Pubitemid 126372907)
-
(1996)
Journal of Econometrics
, vol.75
, Issue.1
, pp. 79-97
-
-
Chib, S.1
-
4
-
-
0037453009
-
Integrating regulatory motif discovery and genome-wide expression analysis
-
DOI 10.1073/pnas.0630591100
-
CONLON, E. M., LIU, X. S., LIEB, J. D. AND LIU, J. S. (2003). Integrating regulatory motifdiscovery and genome-wide expression analysis. Proceedings of the National Academy of Sciences of the United States of America 100, 3339-3344. (Pubitemid 36356585)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.6
, pp. 3339-3344
-
-
Conlon, E.M.1
Liu, X.S.2
Lieb, J.D.3
Liu, J.S.4
-
5
-
-
0002629270
-
Maximum likelihood from incomplete data via the em algorithm
-
DEMPSTER, A. P., LAIRD, N. M AND RUBIN, D. B. (1977). Maximum likelihood from incomplete data via the EM algorithm. Journal of the Royal Statistical Society, Series B 39, 1-38.
-
(1977)
Journal of the Royal Statistical Society, Series B
, vol.39
, pp. 1-38
-
-
Dempster, A.P.1
Laird, N.M.2
Rubin, D.B.3
-
6
-
-
34548396434
-
Generalized hierarchical Markov models for the discovery of length-constrained sequence features from genome tiling arrays
-
DOI 10.1111/j.1541-0420.2007.00760.x
-
GUPTA, M. (2007). Generalized hierarchical Markov models for the discovery of length-constrained sequence features from genome tiling arrays. Biometrics 63, 797-805. (Pubitemid 47352838)
-
(2007)
Biometrics
, vol.63
, Issue.3
, pp. 797-805
-
-
Gupta, M.1
-
7
-
-
35348825777
-
Variable selection in regression mixture modeling for the discovery ofgene regulatory networks
-
GUPTA, M. AND IBRAHIM, J. G. (2007). Variable selection in regression mixture modeling for the discovery ofgene regulatory networks. Journal of the American Statistical Association 102, 867-880.
-
(2007)
Journal of the American Statistical Association
, vol.102
, pp. 867-880
-
-
Gupta, M.1
Ibrahim, J.G.2
-
8
-
-
0037361669
-
Discovery ofconserved sequence patterns using a stochastic dictionary model
-
GUPTA, M. AND LIU, J. S. (2003). Discovery ofconserved sequence patterns using a stochastic dictionary model. Journal of the American Statistical Association 98, 55-56.
-
(2003)
Journal of the American Statistical Association
, vol.98
, pp. 55-56
-
-
Gupta, M.1
Liu, J.S.2
-
9
-
-
33749406106
-
Cell cycle-specifed fuctuation of nucleosome occupancy at gene promoters
-
HOGAN, G. J., LEE, C.-K. AND LIEB, J. D. (2006). Cell cycle-specifed fuctuation of nucleosome occupancy at gene promoters. PLoS Genetics 2,e158.
-
(2006)
PLoS Genetics
, vol.2
-
-
Hogan, G.J.1
Lee, C.-K.2
Lieb, J.D.3
-
10
-
-
77955041719
-
Doubly-stochastic continuous-time hidden Markov approach for analyzing genome tiling arrays
-
JOHNSON, W., LIU, X. AND LIU, J. S. (2009). Doubly-stochastic continuous-time hidden Markov approach for analyzing genome tiling arrays. Annals of Applied Statistics 3, 1183-1203.
-
(2009)
Annals of Applied Statistics
, vol.3
, pp. 1183-1203
-
-
Johnson, W.1
Liu, X.2
Liu, J.S.3
-
12
-
-
34748826166
-
A high-resolution atlas of nucleosome occupancy in yeast
-
DOI 10.1038/ng2117, PII NG2117
-
LEE, W., TILLO, D., BRAY, N., MORSE, R. H., DAVIS, R. W., HUGHES, T. R. AND NISLOW, C. (2007). A high-resolution atlas of nucleosome occupancy in yeast. Nature Genetics 39, 1235-1244. (Pubitemid 47482684)
-
(2007)
Nature Genetics
, vol.39
, Issue.10
, pp. 1235-1244
-
-
Lee, W.1
Tillo, D.2
Bray, N.3
Morse, R.H.4
Davis, R.W.5
Hughes, T.R.6
Nislow, C.7
-
13
-
-
84950424966
-
Bayesian models formultiplelocal sequence alignment and Gibbs sampling strategies
-
LIU, J. S.,NEUWALD,A. F. ANDLAWRENCE, C. E. (1995). Bayesian models formultiplelocal sequence alignment and Gibbs sampling strategies. Journal of the American Statistical Association 90, 1156-1170. (Pubitemid 126093131)
-
(1995)
Journal of the American Statistical Association
, vol.90
, Issue.432
, pp. 1156-1170
-
-
Liu, J.S.1
Neuwald, A.F.2
Lawrence, C.E.3
-
15
-
-
70349312354
-
Ch IP-seq: Advantages and challenges of a maturing technology
-
PARK, P. J. (2009). Ch IP-seq: advantages and challenges of a maturing technology. Nature Reviews Genetics 10, 669-680.
-
(2009)
Nature Reviews Genetics
, vol.10
, pp. 669-680
-
-
Park, P.J.1
-
16
-
-
34547643563
-
Nucleosome positioning signals in genomic DNA
-
DOI 10.1101/gr.6101007
-
PECKHAM, H. E., THURMAN, R. E., FU, Y., STAMATOYANNOPOULOS, J. A., NOBLE, W. S., STRUHL, K. AND WENG, Z. (2007). Nucleosome positioning signals in genomic DNA. Genome Research 17, 1170-1177. (Pubitemid 47204860)
-
(2007)
Genome Research
, vol.17
, Issue.8
, pp. 1170-1177
-
-
Peckham, H.E.1
Thurman, R.E.2
Fu, Y.3
Stamatoyannopoulos, J.A.4
Noble, W.S.5
Struhl, K.6
Weng, Z.7
-
17
-
-
0024610919
-
A tutorial on hidden Markov models and selected applications in speech recognition
-
RABINER, L. R. (1989). A tutorial on hidden Markov models and selected applications in speech recognition. Proceedings of the IEEE 77,257-286.
-
(1989)
Proceedings of the IEEE
, vol.77
, pp. 257-286
-
-
Rabiner, L.R.1
-
18
-
-
0037992395
-
The structure of DNA in the nucleosome core
-
DOI 10.1038/nature01595
-
RICHMOND, T. J. AND DAVEY, C. A. (2003). The structure of DNA in the nucleosome core. Nature 423, 145-150. (Pubitemid 36569532)
-
(2003)
Nature
, vol.423
, Issue.6936
, pp. 145-150
-
-
Richmond, T.J.1
Davey, C.A.2
-
21
-
-
33747500567
-
A genomic code for nucleosome positioning
-
DOI 10.1038/nature04979, PII NATURE04979
-
SEGAL, E., FONDUFE-MITTENDORF, Y., CHEN, L., THASTROM, A., FIELD, Y., MOORE, I. K., WANG, J. P. AND WIDOM, J. (2006). A genomic code for nucleosome positioning. Nature 442, 772-778. (Pubitemid 44258903)
-
(2006)
Nature
, vol.442
, Issue.7104
, pp. 772-778
-
-
Segal, E.1
Fondufe-Mittendorf, Y.2
Chen, L.3
Thastrom, A.4
Field, Y.5
Moore, I.K.6
Wang, J.-P.Z.7
Widom, J.8
-
22
-
-
20444403749
-
Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast
-
DOI 10.1016/j.molcel.2005.05.003, PII S1097276505013092
-
SEKINGER, E. A., MOQTADERI, Z. AND STRUHL, K. (2005). Intrinsic histone-DNA interactions and low nu-cleosome density are important for preferential accessibility of promoter regions in yeast. Molecular Cell 18, 735-748. (Pubitemid 40804808)
-
(2005)
Molecular Cell
, vol.18
, Issue.6
, pp. 735-748
-
-
Sekinger, E.A.1
Moqtaderi, Z.2
Struhl, K.3
-
23
-
-
34249681894
-
Continuous-index hidden Markov modelling of array CGH copy number data
-
DOI 10.1093/bioinformatics/btm059
-
STJERNQVIST, S., RYDEN, T., SKOLD, M. AND STAAF, J. (2007). Continuous-index hidden Markov modelling of array CGH copy number data. Bioinformatics 23, 1006-1014. (Pubitemid 47050588)
-
(2007)
Bioinformatics
, vol.23
, Issue.8
, pp. 1006-1014
-
-
Stjernqvist, S.1
Ryden, T.2
Skold, M.3
Staaf, J.4
-
24
-
-
0000069552
-
Identifability ofmixtures ofproduct measures
-
TEICHER, H. (1967). Identifability ofmixtures ofproduct measures. The Annals of Mathematical Statistics 38, 1300-1302.
-
(1967)
The Annals of Mathematical Statistics
, vol.38
, pp. 1300-1302
-
-
Teicher, H.1
-
25
-
-
0026517738
-
A relationship between the helical twist of DNA and the ordered positioning ofnucleosomes in all eukaryotic cells
-
WIDOM, J. (1992). A relationship between the helical twist of DNA and the ordered positioning ofnucleosomes in all eukaryotic cells. Proceedings of the National Academy of Sciences of the United States of America 89, 1095-1099.
-
(1992)
Proceedings of the National Academy of Sciences of the United States of America
, vol.89
, pp. 1095-1099
-
-
Widom, J.1
-
26
-
-
38949204996
-
Genomic sequence is highly predictive oflocal nucleosome depletion
-
YUAN, G. C. AND LIU, J. S. (2008). Genomic sequence is highly predictive oflocal nucleosome depletion. PLoS Computational Biology 4, e13.
-
(2008)
PLoS Computational Biology
, vol.4
-
-
Yuan, G.C.1
Liu, J.S.2
-
27
-
-
22744432660
-
Molecular biology: Genome-scale identification of nucleosome positions in S. cerevisiae
-
DOI 10.1126/science.1112178
-
YUAN, G. C., LIU, Y. J., DION, M. F., SLACK, M. D., WU, L. F., ALTSCHULER, S. J. AND RANDO, O. J. (2005). Genome-scale identifcation of nucleosome positions in S. cerevisiae. Science 309, 626-630. (Pubitemid 41033649)
-
(2005)
Science
, vol.309
, Issue.5734
, pp. 626-630
-
-
Yuan, G.-C.1
Liu, Y.-J.2
Dion, M.F.3
Slack, M.D.4
Wu, L.F.5
Altschuler, S.J.6
Rando, O.J.7
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