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Volumn 27, Issue 13, 2011, Pages

RINQ: Reference-based indexing for network queries

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ANIMAL; ARTICLE; BIOLOGY; COMPUTER PROGRAM; FACTUAL DATABASE; HUMAN; INFORMATION RETRIEVAL; SIGNAL TRANSDUCTION;

EID: 79959431716     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr203     Document Type: Article
Times cited : (9)

References (26)
  • 1
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul,S.F. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
    • (1990) J. Mol. Biol. , vol.215 , pp. 403-410
    • Altschul, S.F.1
  • 3
    • 67249087759 scopus 로고    scopus 로고
    • A fast and accurate algorithm for comparative analysis of metabolic pathways
    • Ay,F. et al. (2009) A fast and accurate algorithm for comparative analysis of metabolic pathways. J. Bioinformatics Comput. Biol., 7, 389-428.
    • (2009) J. Bioinformatics Comput. Biol. , vol.7 , pp. 389-428
    • Ay, F.1
  • 4
    • 54349104506 scopus 로고    scopus 로고
    • Netgrep: fast network schema searches in interactomes
    • Banks,E. et al. (2008) Netgrep: fast network schema searches in interactomes. Genome Biol., 9, R138.
    • (2008) Genome Biol , vol.9
    • Banks, E.1
  • 5
    • 67849118795 scopus 로고    scopus 로고
    • Torque: topology-free querying of protein interaction networks
    • Bruckner,S. et al. (2009) Torque: topology-free querying of protein interaction networks. Nucleic Acids Res., 37 (Suppl. 2), W106-W108.
    • (2009) Nucleic Acids Res , vol.37 , Issue.SUPPL. 2
    • Bruckner, S.1
  • 6
    • 33748519234 scopus 로고    scopus 로고
    • Reconstruction of phylogenetic relationships from metabolic pathways based on the enzyme hierarchy and the gene ontology
    • Clemente,J.C. et al. (2005) Reconstruction of phylogenetic relationships from metabolic pathways based on the enzyme hierarchy and the gene ontology. enome Inform., 16, 45-55.
    • (2005) Genome Inform , vol.16 , pp. 45-55
    • Clemente, J.C.1
  • 7
    • 34250192191 scopus 로고    scopus 로고
    • Finding conserved and non-conserved reactions using a metabolic pathway alignment algorithm
    • Clemente,J.C. et al. (2006) Finding conserved and non-conserved reactions using a metabolic pathway alignment algorithm. Genome Inform., 17, 46-56.
    • (2006) Genome Inform , vol.17 , pp. 46-56
    • Clemente, J.C.1
  • 8
    • 51349103135 scopus 로고    scopus 로고
    • QNet: a tool for querying protein interaction networks
    • Dost,B. et al. (2008) QNet: a tool for querying protein interaction networks. J. Comput. Biol., 15, 913-925.
    • (2008) J. Comput. Biol. , vol.15 , pp. 913-925
    • Dost, B.1
  • 9
    • 34248576314 scopus 로고    scopus 로고
    • NetMatch: a Cytoscape plugin for searching biological networks
    • Ferro,A. et al. (2007) NetMatch: a Cytoscape plugin for searching biological networks. Bioinformatics, 23, 910-912.
    • (2007) Bioinformatics , vol.23 , pp. 910-912
    • Ferro, A.1
  • 10
    • 27144533653 scopus 로고    scopus 로고
    • Reconstructing the metabolic network of a bacterium from its genome
    • Francke,C. et al. (2005) Reconstructing the metabolic network of a bacterium from its genome. Trends Microbiol., 13, 550-558.
    • (2005) Trends Microbiol , vol.13 , pp. 550-558
    • Francke, C.1
  • 11
    • 0345600247 scopus 로고    scopus 로고
    • A protein interaction map of drosophila melanogaster
    • Giot,L. and Bader,J.S. (2003) A protein interaction map of drosophila melanogaster. Science, 302, 1727-1736.
    • (2003) Science , vol.302 , pp. 1727-1736
    • Giot, L.1    Bader, J.S.2
  • 13
    • 33749602382 scopus 로고    scopus 로고
    • Closure-Tree: an index structure for graph queries
    • He,H. and Singh,A.K. (2006) Closure-Tree: an index structure for graph queries. Int. Conf. Data Eng., 0, 38.
    • (2006) Int. Conf. Data Eng. , pp. 38
    • He, H.1    Singh, A.K.2
  • 14
    • 18344390418 scopus 로고    scopus 로고
    • Erbb receptors and cancer: the complexity of targeted inhibitors
    • Hynes,N.E. and Lane,H.A. (2005) Erbb receptors and cancer: the complexity of targeted inhibitors. Nat. Rev. Cancer, 5, 341-354.
    • (2005) Nat. Rev. Cancer , vol.5 , pp. 341-354
    • Hynes, N.E.1    Lane, H.A.2
  • 15
    • 3442886313 scopus 로고    scopus 로고
    • PathBLAST: a tool for alignment of protein interaction networks
    • Kelley,B.P. et al. (2004) PathBLAST: a tool for alignment of protein interaction networks. Nucleic Acids Res., 32, W83-W88.
    • (2004) Nucleic Acids Res , vol.32
    • Kelley, B.P.1
  • 16
    • 17044368752 scopus 로고    scopus 로고
    • Gene regulatory networks for development
    • Levine,M. and Davidson,E.H. (2005) Gene regulatory networks for development. Proc. Natl Acad. Sci. USA, 102, 4936-4942.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 4936-4942
    • Levine, M.1    Davidson, E.H.2
  • 17
    • 66349108229 scopus 로고    scopus 로고
    • IsoRankN: spectral methods for global alignment of multiple protein networks
    • Liao,C. et al. (2009) IsoRankN: spectral methods for global alignment of multiple protein networks. Bioinformatics, 25, 253-238.
    • (2009) Bioinformatics , vol.25 , pp. 253-238
    • Liao, C.1
  • 18
    • 77951599230 scopus 로고    scopus 로고
    • SIGMA: a set-cover-based inexact graph matching algorithm
    • Mongiovi,M. et al. (2010) SIGMA: a set-cover-based inexact graph matching algorithm. J. Bioinformatics Comput. Biol., 8, 199-218.
    • (2010) J. Bioinformatics Comput. Biol. , vol.8 , pp. 199-218
    • Mongiovi, M.1
  • 19
    • 0032919364 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopedia of Genes and Genomes
    • Ogata,H. et al. (1999) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res., 27, 29-34.
    • (1999) Nucleic Acids Res , vol.27 , pp. 29-34
    • Ogata, H.1
  • 20
    • 24044488288 scopus 로고    scopus 로고
    • Alignment of metabolic pathways
    • Pinter,R.Y. et al. (2005) Alignment of metabolic pathways. Bioinformatics, 21, 3401-3408.
    • (2005) Bioinformatics , vol.21 , pp. 3401-3408
    • Pinter, R.Y.1
  • 21
    • 33646347364 scopus 로고    scopus 로고
    • QPath: a method for querying pathways in a protein-protein interaction network
    • Shlomi,T. et al. (2006) QPath: a method for querying pathways in a protein-protein interaction network. BMC Bioinformatics, 7, 199.
    • (2006) BMC Bioinformatics , vol.7 , pp. 199
    • Shlomi, T.1
  • 22
    • 34547416529 scopus 로고    scopus 로고
    • Pairwise global alignment of protein interaction networks by matching neighborhood topology
    • Springer, Berlin/Heidelberg
    • Singh,R. et al. (2007) Pairwise global alignment of protein interaction networks by matching neighborhood topology. In Research in Computational Molecular Biology, Lecture Notes in Computer Science, Vol. 4453, Springer, Berlin/Heidelberg, pp. 16-31.
    • (2007) Research in Computational Molecular Biology, Lecture Notes in Computer Science , vol.4453 , pp. 16-31
    • Singh, R.1
  • 23
    • 38449123881 scopus 로고    scopus 로고
    • An iterative algorithm for metabolic network-based drug target identification
    • Sridhar,P. et al. (2007) An iterative algorithm for metabolic network-based drug target identification. Pac. Symp. Biocomput., 12, 88-99.
    • (2007) Pac. Symp. Biocomput. , vol.12 , pp. 88-99
    • Sridhar, P.1
  • 24
    • 33846662155 scopus 로고    scopus 로고
    • SAGA: a subgraph matching tool for biological graphs
    • Tian,Y. et al. (2007) SAGA: a subgraph matching tool for biological graphs. Bioinformatics, 23, 232-239.
    • (2007) Bioinformatics , vol.23 , pp. 232-239
    • Tian, Y.1
  • 25
    • 3142736597 scopus 로고    scopus 로고
    • Graph indexing: a frequent structure-based approach
    • New York, NY, USA
    • Yan,X. et al. (2004) Graph indexing: a frequent structure-based approach. In SIGMOD, ACM, New York, NY, USA, pp. 335-346.
    • (2004) SIGMOD, ACM , pp. 335-346
    • Yan, X.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.