IRAP: An efficient retrotransposon-based electrophoretic technique for studying genetic variability among geographical isolates of Schistosoma japonicum

Electrophoresis

Volumn 32, Issue 12, 2011, Pages 1473-1479

  Li, Juan ^a,b   Zhao, Guang Hui ^a,c   Li, Xiao Yan ^c   Chen, Fen ^a,b   Chen, Jing Bin ^b   Zou, Feng Cai ^d   Yang, Jian Fa ^d   Lin, Rui Qing ^b   Weng, Ya Biao ^a,b   Zhu, Xing Quan ^a,d  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b SOUTH CHINA AGRICULTURAL UNIVERSITY   (China)

^c NORTHWEST A F UNIVERSITY   (China)

^d YUNNAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

Genetic diversity; Inter retrotransposon amplified polymorphism; Retrotransposons; Schistosoma japonicum; Schistosomiasis

Indexed keywords

BIODIVERSITY; GENES;

DNA FRAGMENT; GENETIC VARIABILITY; GENETICS DIVERSITIES; INTER-RETROTRANSPOSON-AMPLIFIED POLYMORPHISM; MAINLAND CHINAS; PARASITE-; RETROTRANSPOSON; SCHISTOSOMA JAPONICUM; SCHISTOSOMIASIS;

LAKES;

DNA FRAGMENT; GENOMIC DNA;

ARTICLE; CHINA; CLADISTICS; CONTROLLED STUDY; FEMALE; GENETIC ANALYSIS; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; GEOGRAPHIC ORIGIN; INTER RETROTRANSPOSON AMPLIFIED POLYMORPHISM; LAKE; MALE; MARSH; NONHUMAN; PARASITE ISOLATION; PHYLOGENY; POPULATION STRUCTURE; REPRODUCIBILITY; RETROPOSON; SCHISTOSOMA JAPONICUM; SEX DIFFERENTIATION;

EID: 79959424111     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.201100044     Document Type: Article

References (45)

1. Suoniemi, A., Anamthawat-Jónsson, K., Arna, T., Schulman, A. H., Plant. Mol. Biol. 1996, 30, 1321-1329.
2. Neumann, P., Koblízková, A., Navrátilová, A., Macas, J., Genetics 2006, 173, 1047-1056.
3. Kumar, A., Pearce, S. R., McLean, K., Harrison, G., Heslop-Harrison, J. S., Waugh, R., Flavell, A. J., Genetica 1997, 100, 205-217.
4. Kalendar, R., Grob, T., Regina, M., Suoniemi, A., Schulman, A., Theor. Appl. Genet. 1999, 98, 704-711.
5. Adams, S. E., Mellor, J., Gull, K., Sim, R. B., Tuite, M. F., Kingsman, S. M., Kingsman, A. J., Cell 1987, 49, 111-119.
6. Grandbastien, M. A., Trends Genet. 1992, 8, 103-108.
7. Sabot, F., Schulman, A. H., Heredity 2006, 97, 381-388.
8. Shimamura, M., Yasue, H., Ohshima, K., Abe, H., Kato, H., Kishiro, T., Goto, M., Munechika, I., Okada, N., Nature 1997, 388, 666-670.
9. Leigh, F., Kalendar, R., Lea, V., Lee, D., Donini, P., Schulman, A. H., Mol. Genet. Genomics 2003, 269, 464-474.
10. Waugh, R., McLean, K., Flavell, A. J., Pearce, S. R., Kumar, A., Thomas, B. B., Powell, W., Mol. Gen. Genet. 1997, 253, 687-694.
11. Kalendar, R., Schulman, A. H., Nat. Protoc. 2006, 1, 2478-2484.
12. Branco, C. J., Vieira, E. A., Malone, G., Kopp, M. M., Malone, E., Bernardes, A., Mistura, C. C., Carvalho, F. I., Oliveira, C. A., J. Appl. Genet. 2007, 48, 107-113.
13. Tatout, C., Warwick, S., Lenoir, A., Deragon, J. M., Mol. Biol. Evol. 1999, 16, 1614-1621.
14. Baumel, A., Ainouche, M., Kalendar, R., Schulman, A. H., Mol. Biol. Evol. 2002, 19, 1218-1227.
15. Pasquali, M., Dematheis, F., Gullino, M. L., Garibaldi, A., Phytopathology 2007, 97, 987-996.
16. Kalendar, R., Tanskanen, J., Immonen, S., Nevo, E., Schulman, A. H., Proc. Natl. Acad. Sci. USA 2000, 97, 6603-6607.
17. Vicient, C. M., Jääskeläinen, M. J., Kalendar, R., Schulman, A. H., Plant Physiol. 2001, 125, 1283-1292.
18. Manninen, O., Kalendar, R., Robinson, J., Schulman, A. H., Mol. Gen. Genet. 2000, 264, 325-334.
19. Boyko, E., Kalendar, R., Korzun, V., Fellers, J., Korol, A., Schulman, A. H., Gill, B. S., Plant. Mol. Biol. 2002, 48, 767-790.
20. Schistosoma japonicum Genome Sequencing and Functional Analysis Consortium. Nature 2009, 460, 345-351.
21. Zhou, X. N., Wang, L. Y., Chen, M. G., Wu, X. H., Jiang, Q. W., Chen, X. Y., Zheng, J., Utzinger, J., Acta Trop. 2005, 96, 97-105.
22. Zhou, P., Chen, N., Zhang, R. L., Lin, R. Q., Zhu, X. Q., Trends Parasitol. 2008, 24, 190-196.
23. Li, T., He, S., Zhao, H., Zhao, G., Zhu, X. Q., Trends Parasitol. 2010, 26, 264-270.
24. Engels, D., Wang, L. Y., Palmer, K. L., Acta Trop. 2005, 96, 67-68.
25. Utzinger, J., Zhou, X. N., Chen, M. G., Bergquist, R., Acta Trop. 2005, 96, 69-96.
26. Zhao, G. H., Mo, X. H., Zou, F. C., Li, J., Weng, Y. B., Lin, R. Q., Xia, C. M., Zhu, X. Q., Vet. Parasitol. 2009, 162, 67-74.
27. Zhao, G. H., Li, J., Zou, F. C., Mo, X. H., Yuan, Z. G., Lin, R. Q., Weng, Y. B., Zhu, X. Q., Infect. Genet. Evol. 2009, 9, 903-907.
28. Chen, L., Gao, P., Yamashita, T., Nara, T., Kojima, S., Sendo, F., Araki, Y., Parasitol. Int. 1998, 47, 289-300.
29. Zhu, X., Bøgh, H., Gasser, R. B., Electrophoresis 1999, 20, 2830-2833.
30. Zhao, G. H., Li, J., Lin, R. Q., Zou, F. C., Liu, W., Yuan, Z. G., Mo, X. H., Song, H. Q., Weng, Y. B., Zhu, X. Q., Electrophoresis 2010, 31, 641-647.
31. Van Herwerden, L., Blair, D., Agatsuma, T., Parasitology 1998, 116, 311-317.
32. Li, Q. Y., Dong, S. J., Zhang, W. Y., Lin, R. Q., Wang, C. R., Qian, D. X., Lun, Z. R., Song, H. Q., Zhu, X. Q., Electrophoresis 2009, 30, 403-409.
33. Yeh, F. C., Yang, R. C., Boyle, T., Ye, Z. H., Mao, J. X., POPGENE, the User Friendly Shareware for Population Genetic Analysis, Molecular Biology and Biotechnology Center, University of Alberta, Edmonton, Canada 1997.
34. Nei, M., Li, W. H., Proc. Natl. Acad. Sci. USA 1979, 76, 5269-5273.
35. Rohlf, F. J., NTSYS-PC Numerical Taxonomy and Multivariate Analysis System Manual, v. 2.1, Applied Biostatistics Inc, New York 2000.
36. *: Phylogenetic Analysis Using Parsimony (and Other Methods), Sinauer Associates, Sunderland, MA 2002.
37. Page, R. D., Comput. Appl. Biosci. 1996, 12, 357-358.
38. Shrivastava, J., Gower, C. M., Balolong, E., Jr., Wang, T. P., Qian, B. Z., Webster, J. P., Parasitology 2005, 131, 617-626.
39. Shrivastava, J., Qian, B. Z., Mcvean, G., Webster, J. P., Mol. Ecol. 2005, 14, 839-849.
40. Anou, N., Yanwen, X., Youren, F., Southeast Asian J. Trop. Med. Public Health 2002, 33, 720-724.
41. Sørensen, E., Bøgh, H. O., Wilson, S., Johansen, M. V., Int. J. Parasitol. 2000, 30, 1035-1041.
42. Mo, X. H., Song, H. Q., Zhao, G. H., Li, J., Zou, F. C., Liu, W., Wu, X. Y., Lin, R. Q., Weng, Y. B., Zhu, X. Q., Electrophoresis 2011, in press.
43. Králová-Hromadová, I., Spakulová, M., Horácková, E., Turceková, L., Novobilský, A., Beck, R., Koudela, B., Marinculić, A., Rajský, D., Pybus, M., J. Parasitol. 2008, 94, 58-67.
44. Schulman, A. H., Flavell, A. J., Ellis, T. H., Methods. Mol. Biol. 2004, 260, 145-173.
45. Pearce, S. R., Knox, M., Ellis, T. H., Flavell, A. J., Kumar, A., Mol. Gen. Genet. 2000, 263, 898-907.