메뉴 건너뛰기




Volumn 6, Issue 1, 2011, Pages

DeBi: Discovering Differentially Expressed Biclusters using a Frequent Itemset Approach

Author keywords

[No Author keywords available]

Indexed keywords


EID: 79959423582     PISSN: None     EISSN: 17487188     Source Type: Journal    
DOI: 10.1186/1748-7188-6-18     Document Type: Article
Times cited : (62)

References (29)
  • 1
    • 65549104397 scopus 로고    scopus 로고
    • A roadmap of clustering algorithms: finding a match for a biomedical application
    • Andreopoulos B, An A, Wang X, Schroeder M. A roadmap of clustering algorithms: finding a match for a biomedical application. Brief Bioinformatics 2008, 10(3):297-314.
    • (2008) Brief Bioinformatics , vol.10 , Issue.3 , pp. 297-314
    • Andreopoulos, B.1    An, A.2    Wang, X.3    Schroeder, M.4
  • 3
    • 0001138328 scopus 로고
    • Algorithm AS 136: A k-means clustering algorithm
    • Hartigan JA, Wong MA. Algorithm AS 136: A k-means clustering algorithm. Applied Statistics 1979, 28:100-108.
    • (1979) Applied Statistics , vol.28 , pp. 100-108
    • Hartigan, J.A.1    Wong, M.A.2
  • 6
    • 0242690489 scopus 로고    scopus 로고
    • Discovering local structure in gene expression data: the order-preserving submatrix problem
    • 10.1089/10665270360688075, 12935334
    • Ben-Dor A, Chor B, Karp R, Yakhini Z. Discovering local structure in gene expression data: the order-preserving submatrix problem. J Comput Biol 2003, 10(3-4):373-384. 10.1089/10665270360688075, 12935334.
    • (2003) J Comput Biol , vol.10 , Issue.3-4 , pp. 373-384
    • Ben-Dor, A.1    Chor, B.2    Karp, R.3    Yakhini, Z.4
  • 7
    • 84864994884 scopus 로고    scopus 로고
    • Iterative signature algorithm for the analysis of large-scale gene expression data
    • Bergmann S, Ihmels J, Barkai N. Iterative signature algorithm for the analysis of large-scale gene expression data. Phys Rev E Stat Nonlin Soft Matter Phys 2003, 67(3 Pt 1):031902.
    • (2003) Phys Rev E Stat Nonlin Soft Matter Phys , vol.67 , Issue.3 PART 1 , pp. 031902
    • Bergmann, S.1    Ihmels, J.2    Barkai, N.3
  • 8
    • 0041627879 scopus 로고    scopus 로고
    • Extracting conserved gene expression motifs from gene expression data
    • Murali TM, Kasif S. Extracting conserved gene expression motifs from gene expression data. Pac Symp Biocomput 2003, 77-88.
    • (2003) Pac Symp Biocomput , pp. 77-88
    • Murali, T.M.1    Kasif, S.2
  • 9
    • 11244306358 scopus 로고    scopus 로고
    • Discovering statistically significant biclusters in gene expression data
    • 10.1093/bioinformatics/18.suppl_1.S136, 12169541
    • Tanay A, Sharan R, Shamir R. Discovering statistically significant biclusters in gene expression data. Bioinformatics 2002, 18(Suppl 1):S136-S144. 10.1093/bioinformatics/18.suppl_1.S136, 12169541.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Tanay, A.1    Sharan, R.2    Shamir, R.3
  • 10
    • 33646137384 scopus 로고    scopus 로고
    • A systematic comparison and evaluation of biclustering methods for gene expression data
    • 10.1093/bioinformatics/btl060, 16500941
    • Prelic A, Bleuler S, Zimmermann P, Wille A, Buehlmann P, Gruissem W, Hennig L, Thiele L, Zitzler E. A systematic comparison and evaluation of biclustering methods for gene expression data. Bioinformatics 2006, 22(9):1122-1129. 10.1093/bioinformatics/btl060, 16500941.
    • (2006) Bioinformatics , vol.22 , Issue.9 , pp. 1122-1129
    • Prelic, A.1    Bleuler, S.2    Zimmermann, P.3    Wille, A.4    Buehlmann, P.5    Gruissem, W.6    Hennig, L.7    Thiele, L.8    Zitzler, E.9
  • 11
    • 69849086336 scopus 로고    scopus 로고
    • QUBIC: a qualitative biclustering algorithm for analyses of gene expression data
    • 10.1093/nar/gkp491, 2731891, 19509312
    • Li G, Ma Q, Tang H, Paterson AH, Xu Y. QUBIC: a qualitative biclustering algorithm for analyses of gene expression data. Nucl Acids Res 2009, 37(15):e101. 10.1093/nar/gkp491, 2731891, 19509312., http://nar.oxfordjournals.org/cgi/content/abstract/37/15/e101
    • (2009) Nucl Acids Res , vol.37 , Issue.15
    • Li, G.1    Ma, Q.2    Tang, H.3    Paterson, A.H.4    Xu, Y.5
  • 12
    • 3142768191 scopus 로고    scopus 로고
    • Biclustering algorithms for biological data analysis: a survey
    • 10.1109/TCBB.2004.2, 17048406
    • Madeira SC, Oliveira AL. Biclustering algorithms for biological data analysis: a survey. IEEE/ACM Trans Comput Biol Bioinform 2004, 1:24-45. 10.1109/TCBB.2004.2, 17048406.
    • (2004) IEEE/ACM Trans Comput Biol Bioinform , vol.1 , pp. 24-45
    • Madeira, S.C.1    Oliveira, A.L.2
  • 14
    • 33845876254 scopus 로고    scopus 로고
    • The Connectivity Map: a new tool for biomedical research
    • 10.1038/nrc2044, 17186018
    • Lamb J. The Connectivity Map: a new tool for biomedical research. Nature reviews Cancer 2007, 7:54-60. 10.1038/nrc2044, 17186018.
    • (2007) Nature reviews Cancer , vol.7 , pp. 54-60
    • Lamb, J.1
  • 16
    • 1542328960 scopus 로고    scopus 로고
    • Identification and distinct regulation of yeast TATA box-containing genes
    • 10.1016/S0092-8674(04)00205-3, 15006352
    • Basehoar AD, Zanton SJ, Pugh BF. Identification and distinct regulation of yeast TATA box-containing genes. Cell 2004, 116(5):699-709. 10.1016/S0092-8674(04)00205-3, 15006352., http://www.cell.com/retrieve/pii/S0092867404002053
    • (2004) Cell , vol.116 , Issue.5 , pp. 699-709
    • Basehoar, A.D.1    Zanton, S.J.2    Pugh, B.F.3
  • 17
    • 33645769260 scopus 로고    scopus 로고
    • An improved map of conserved regulatory sites for Saccharomyces cerevisiae
    • 10.1186/1471-2105-7-113, 1435934, 16522208
    • MacIsaac KD, Wang T, Gordon DB, Gifford DK, Stormo GD, Fraenkel E. An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC Bioinformatics 2006, 7:113. 10.1186/1471-2105-7-113, 1435934, 16522208., http://www.biomedcentral.com/1471-2105/7/113
    • (2006) BMC Bioinformatics , vol.7 , pp. 113
    • MacIsaac, K.D.1    Wang, T.2    Gordon, D.B.3    Gifford, D.K.4    Stormo, G.D.5    Fraenkel, E.6
  • 19
    • 33646894725 scopus 로고    scopus 로고
    • BicAT: a biclustering analysis toolbox
    • 10.1093/bioinformatics/btl099, 16551664
    • Barkow S, Bleuler S, Prelic A, Zimmermann P, Zitzler E. BicAT: a biclustering analysis toolbox. Bioinformatics 2006, 22(10):1282-1283. 10.1093/bioinformatics/btl099, 16551664.
    • (2006) Bioinformatics , vol.22 , Issue.10 , pp. 1282-1283
    • Barkow, S.1    Bleuler, S.2    Prelic, A.3    Zimmermann, P.4    Zitzler, E.5
  • 22
    • 43149108659 scopus 로고    scopus 로고
    • Subclass Mapping: Identifying Common Subtypes in Independent Disease Data Sets
    • 10.1371/journal.pone.0001195, 2065909, 18030330
    • Hoshida Y, Brunet JP, Tamayo P, Golub TR, Mesirov JP. Subclass Mapping: Identifying Common Subtypes in Independent Disease Data Sets. PLoS ONE 2007, 2(11):e1195. 10.1371/journal.pone.0001195, 2065909, 18030330., http://dx.plos.org/10.1371%2Fjournal.pone.0001195
    • (2007) PLoS ONE , vol.2 , Issue.11
    • Hoshida, Y.1    Brunet, J.P.2    Tamayo, P.3    Golub, T.R.4    Mesirov, J.P.5
  • 24
    • 21744445069 scopus 로고    scopus 로고
    • Heat shock proteins in cancer: diagnostic, prognostic, predictive, and treatment implications
    • 10.1379/CSC-99r.1, 1176476, 16038406
    • Ciocca DR, Calderwood SK. Heat shock proteins in cancer: diagnostic, prognostic, predictive, and treatment implications. Cell Stress Chaperones 2005, 10(2):86-103. 10.1379/CSC-99r.1, 1176476, 16038406.
    • (2005) Cell Stress Chaperones , vol.10 , Issue.2 , pp. 86-103
    • Ciocca, D.R.1    Calderwood, S.K.2
  • 25
    • 34248357109 scopus 로고    scopus 로고
    • Automatic layout and visualization of biclusters
    • 10.1186/1748-7188-1-15, 1624833, 16952321
    • Grothaus GA, Mufti A, Murali TM. Automatic layout and visualization of biclusters. Algorithms for molecular biology AMB 2006, 1:15. 10.1186/1748-7188-1-15, 1624833, 16952321.
    • (2006) Algorithms for molecular biology AMB , vol.1 , pp. 15
    • Grothaus, G.A.1    Mufti, A.2    Murali, T.M.3
  • 26
    • 0034131044 scopus 로고    scopus 로고
    • Impaired proteasome function in Alzheimer's disease
    • Keller JN, Hanni KB, Markesbery WR. Impaired proteasome function in Alzheimer's disease. J Neurochem 2000, 75:436-9., http://onlinelibrary.wiley.com/doi/10.1046/j.1471-4159.2000.0750436.x/abstract
    • (2000) J Neurochem , vol.75 , pp. 436-439
    • Keller, J.N.1    Hanni, K.B.2    Markesbery, W.R.3
  • 27
    • 55049125773 scopus 로고    scopus 로고
    • The ubiquitin-proteasome pathway mediates gelsolin protein downregulation in pancreatic cancer
    • 2435493, 18584046
    • Ni XG, Zhou L, Wang GQ, Liu SM, Bai XF, Liu F, Peppelenbosch MP, Zhao P. The ubiquitin-proteasome pathway mediates gelsolin protein downregulation in pancreatic cancer. Mol Med 2008, 14(9-10):582--9. 2435493, 18584046.
    • (2008) Mol Med , vol.14 , Issue.9-10 , pp. 582-9
    • Ni, X.G.1    Zhou, L.2    Wang, G.Q.3    Liu, S.M.4    Bai, X.F.5    Liu, F.6    Peppelenbosch, M.P.7    Zhao, P.8
  • 29
    • 77954311470 scopus 로고    scopus 로고
    • Differential co-expression framework to quantify goodness of biclusters and compare biclustering algorithms
    • 10.1186/1748-7188-5-23, 2892498, 20507637
    • Chia BKH, Karuturi RKM. Differential co-expression framework to quantify goodness of biclusters and compare biclustering algorithms. Algorithms for molecular biology AMB 2010, 5:23. 10.1186/1748-7188-5-23, 2892498, 20507637.
    • (2010) Algorithms for molecular biology AMB , vol.5 , pp. 23
    • Chia, B.K.H.1    Karuturi, R.K.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.