Two nuclear life cycle-regulated genes encode Interchangeable Subunits C of mitochondrial ATP Synthase in Podospora anserina

Molecular Biology and Evolution

Volumn 28, Issue 7, 2011, Pages 2063-2075

  Déquard Chablat, Michelle ^a,b   Sellem, Carole H ^b   Golik, Pawel ^c,d   Bidard, Frédérique ^a,b   Martos, Alexandre ^e   Bietenhader, Maïlis ^e   Di Rago, Jean Paul ^e   Sainsard Chanet, Annie ^a,b   Hermann Le Denmat, Sylvie ^a,b,f   Contamine, Véronique ^a,b  

^a UNIVERSITÉ PARIS SACLAY   (France)

^b CNRS   (France)

^c UNIVERSITY OF WARSAW   (Poland)

^d INSTITUTE OF BIOCHEMISTRY AND BIOPHYSICS   (Poland)

^e Institut de Biochimie et Genetique Cellulaires   (France)

^f ECOLE NORMALE SUPÉRIEURE   (France)

Author keywords

ATP synthase; gene partition; mitochondria; Podospora anserina; subunit c; transcriptional regulation

Indexed keywords

ADENOSINE TRIPHOSPHATE SYNTHASE 9 5; ADENOSINE TRIPHOSPHATE SYNTHASE 9 7; POLYPEPTIDE; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE INHIBITOR; UNCLASSIFIED DRUG;

ARTICLE; ASCOSPORE; ATP9 GENE; ENERGY METABOLISM; ENZYME ACTIVITY; FUNGAL GENE; FUNGAL SPORE GERMINATION; GENE CONTROL; GENE DELETION; GENE EXPRESSION; GENE SEQUENCE; GENOME; GENOTYPE; LIFE CYCLE; MITOCHONDRION; NONHUMAN; PHENOTYPE; PODOSPORA ANSERINA; REPRODUCTION;

BASE SEQUENCE; CELL NUCLEUS; FUNGAL PROTEINS; GENE DELETION; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, FUNGAL; MITOCHONDRIAL PROTON-TRANSLOCATING ATPASES; MOLECULAR SEQUENCE DATA; MYCELIUM; PHENOTYPE; PHYLOGENY; PODOSPORA; PROTEIN SUBUNITS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; SEQUENCE ALIGNMENT; SPORES, FUNGAL;

FUNGI; PODOSPORA; PODOSPORA ANSERINA;

EID: 79959405219     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msr025     Document Type: Article

References (38)

1. Adams KL, Palmer JD. 2003. Evolution of mitochondrial gene content: gene loss and transfer to the nucleus. Mol Phylogenet Evol. 29:380-395. (Pubitemid 37491885)
2. Allen JF. 2003. Why chloroplasts and mitochondria contain genomes. Comp Funct Genomics. 4:31-36. (Pubitemid 36304736)
3. Anderson S, Bankier AT, Barrell BG, et al. (14 co-authors). 1981. Sequence and organization of the human mitochondrial genome. Nature 290:457-465. (Pubitemid 11159074)
4. Andersson U, Houstek J, Cannon B. 1997. ATP synthase subunit c expression: physiological regulation of the P1 and P2 genes. Biochem J. 323:379-385. (Pubitemid 27183119)
5. Bittner-Eddy P, Monroy AF, Brambl R. 1994. Expression of mitochondrial genes in the germinating conidia of Neurospora crassa. J Mol Biol. 235:881-897. (Pubitemid 24047830)
6. Brown TA, Waring RB, ScazzocchioC,Davies RW. 1985. The Aspergillus nidulans mitochondrial genome. Curr Genet. 9:113-117. (Pubitemid 15159019)
7. Cummings DJ, McNally KL, Domenico JM, Matsuura ET. 1990. The complete DNA sequence of the mitochondrial genome of Podospora anserina. Curr Genet. 17:375-402. (Pubitemid 20172935)
8. de Graaf RM, van Alen TA, Dutilh BE, Kuiper JWP, van Zoggel HJAA, Huynh MB, Görtz HD, Huynen MA, Hackstein JHP. 2009. The mitochondrial genomes of the ciliates Euplotes minuta and Euplotes crassus. BMC Genomics. 10:514.
9. De Grassi A, Lanave C, Saccone C. 2006. Evolution of ATP synthase subunit c and cytochrome c gene families in selected Metazoan classes. Gene 371:224-233.
10. O-ATP synthases. Int Rev Cell Mol Biol. 267:1-58.
11. Dyer MR, Walker JE. 1993. Sequences of members of the human gene family for the c subunit of mitochondrial ATP synthase. Biochem J. 293:51-64. (Pubitemid 23223146)
12. Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797. (Pubitemid 38832724)
13. El-Khoury R, Sellem CH, Coppin E, Boivin A, Maas MF, Debuchy R, Sainsard-Chanet A. 2008. Gene deletion and allelic replacement in the filamentous fungus Podospora anserina. Curr Genet. 53:249-258.
14. Erpenbeck D, Voigt O, Adamski M, Adamska M, Hooper JN, Wörheide G, Degnan BM. 2007. Mitochondrial diversity of early-branching metazoa is revealed by the complete mt genome of a haplosclerid demosponge. Mol Biol Evol. 24:19-22. (Pubitemid 46026277)
15. Espagne E, Lespinet O, Malagnac F, et al. (35 co authors). 2008. The genome sequence of the model ascomycete fungus Podospora anserina. Genome Biol. 9:R77.
16. Feagin JE. 2000. Mitochondrial genome diversity in parasites. Int J Parasitol. 30:371-390. (Pubitemid 30145467)
17. O-ATPase is encoded by a nuclear gene in Chlamydomonas reinhardtii. J Biol Chem. 277:6051-6058. (Pubitemid 34968390)
18. Gouy M, Guindon S, Gascuel O. 2010. SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol. 27:221-224.
19. Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696-704. (Pubitemid 37365050)
20. Hibbett DS, Binder M, Bischoff JF, et al. (67 couthors). 2007. A higher-level phylogenetic classification of the fungi. Mycol Res. 111:509-547. (Pubitemid 46915419)
21. 1-ATPase in brown adipose tissue. J Biol Chem. 270:7689-7694.
22. Huson DH, Richter DC, Rausch C, Dezulian T, Franz M, Rupp R. 2007. Dendroscope: an interactive viewer for large phylogenetic trees. BMC Bioinformatics. 8:460.
23. James TY, Kauff F, Schoch CL, et al. (70 co-authors). 2006. Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature 443:818-822. (Pubitemid 44622687)
24. Ki JS, Park HG, Lee JS. 2009. The complete mitochondrial genome of the cyclopoid copepod Paracyclopina nana: a highly divergent genome with novel gene order and atypical gene numbers. Gene 435:13-22.
25. O subunit P1 isoform. FASEB J. 22:55-63.
26. Lav́n JL, Oguiza JA, Raḿrez L, Pisabarro AG. 2008. Comparative genomics of the oxidative phosphorylation system in fungi. Fungal Genet Biol. 45:1248-1256.
27. Mallet LV, Becq J, Deschavanne P. 2010. Whole genome evaluation of horizontal transfers in the pathogenic fungus Aspergillus fumigatus. BMC Genomics. 11:171.
28. McLaughlin DJ, Hibbett DS, Lutzoni F, Spatafora JW, Vilgalys R. 2009. The search for the fungal tree of life. Trends Microbiol. 17:488-497.
29. Race HL, Herrmann RG, Martin W. 1999. Why have organelles retained genomes? Trends Genet. 15:364-370. (Pubitemid 29417591)
30. O in Saccharomyces cerevisiae. Biochim Biophys Acta. 1793: 108-116.
31. Ridder R, Künkele KP, Osiewacz HD. 1991. Sequence of the nuclear ATP synthase subunit 9 gene of Podospora anserina: lack of similarity to the mitochondrial genome. Curr Genet. 20: 349-351.
32. Rizet G. 1952. Les phénomènes de barrage chez Podospora anserina. I. Analyse génétique des barrages entre souche S et s. Rev Cytol Biol Veg. 13:51-92.
33. Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phyloge-netic inference under mixed models. Bioinformatics 19: 1572-1574. (Pubitemid 37038874)
34. Schmidt B, Wachter E, Sebald W, Neupert W. 1984. Processing peptidase of Neurospora mitochondria. Two step cleavage of imported ATPase subunit 9. Eur J Biochem. 144:581-588.
35. Signorovitch AY, Buss LW, Dellaporta SL. 2007. Comparative genomics of large mitochondria in placozoans. PLoS Genet. 3: e13.
36. Stock D, Leslie AG, Walker JE. 1999. Molecular architecture of the rotary motor in ATP synthase. Science 286:1700-1705. (Pubitemid 129515869)
37. Swofford DL. 2003. PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4.0b10. Sunderland (MA): Sinauer Associates.
38. Van den Boogaart P, Samallo J, Agsteribbe E. 1982. Similar genes for a mitochondrial ATPase subunit in the nuclear and mitochondrial genomes of Neurospora crassa. Nature 298: 187-189.