메뉴 건너뛰기




Volumn 94, Issue 7, 2011, Pages 3642-3650

Accuracy of genomic prediction using low-density marker panels

Author keywords

BayesB; Genomic selection; Low density panel; TABLUP

Indexed keywords

ANIMAL; ANIMAL DISEASE; ARTICLE; BAYES THEOREM; BREEDING; CATTLE; FEMALE; GENETIC MARKER; GENETIC PROCEDURES; GENETIC SELECTION; GENETICS; GENOME; MALE; METHODOLOGY; QUANTITATIVE TRAIT; REPRODUCIBILITY; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 79959343703     PISSN: 00220302     EISSN: 15253198     Source Type: Journal    
DOI: 10.3168/jds.2010-3917     Document Type: Article
Times cited : (41)

References (28)
  • 1
    • 79959329326 scopus 로고    scopus 로고
    • Genomic breeding value prediction using three Bayesian methods and application to reduced density marker panels
    • Cleveland M.A., Forni S., Deeb N., Maltecca C. Genomic breeding value prediction using three Bayesian methods and application to reduced density marker panels. BMC Proc. 2010, 4(Suppl. 1):S6.
    • (2010) BMC Proc. , vol.4 , Issue.SUPPL. 1
    • Cleveland, M.A.1    Forni, S.2    Deeb, N.3    Maltecca, C.4
  • 3
    • 77958581195 scopus 로고    scopus 로고
    • The impact of genetic architecture on genome-wide evaluation methods
    • Daetwyler H.D., Pong-Wong R., Villanueva B., Woolliams J.A. The impact of genetic architecture on genome-wide evaluation methods. Genetics 2010, 185:1021-1031.
    • (2010) Genetics , vol.185 , pp. 1021-1031
    • Daetwyler, H.D.1    Pong-Wong, R.2    Villanueva, B.3    Woolliams, J.A.4
  • 4
    • 54449097329 scopus 로고    scopus 로고
    • Accuracy of predicting the genetic risk of disease using a genome-wide approach
    • Daetwyler H.D., Villanueva B., Woolliams J.A. Accuracy of predicting the genetic risk of disease using a genome-wide approach. PLoS ONE 2008, 3:e3395.
    • (2008) PLoS ONE , vol.3
    • Daetwyler, H.D.1    Villanueva, B.2    Woolliams, J.A.3
  • 6
    • 67349287476 scopus 로고    scopus 로고
    • Genomic selection: Prediction of accuracy and maximisation of long term response
    • Goddard M. Genomic selection: Prediction of accuracy and maximisation of long term response. Genetica 2009, 136:245-257.
    • (2009) Genetica , vol.136 , pp. 245-257
    • Goddard, M.1
  • 7
    • 66249122107 scopus 로고    scopus 로고
    • Mapping genes for complex traits in domestic animals and their use in breeding programmes
    • Goddard M.E., Hayes B.J. Mapping genes for complex traits in domestic animals and their use in breeding programmes. Nat. Rev. Genet. 2009, 10:381-391.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 381-391
    • Goddard, M.E.1    Hayes, B.J.2
  • 8
    • 45849103551 scopus 로고    scopus 로고
    • Nonparametric methods for incorporating genomic information into genetic evaluations: An application to mortality in broilers
    • González-Recio O., Gianola D., Long N., Weigel K.A., Rosa G.J., Avendaño S. Nonparametric methods for incorporating genomic information into genetic evaluations: An application to mortality in broilers. Genetics 2008, 178:2305-2313.
    • (2008) Genetics , vol.178 , pp. 2305-2313
    • González-Recio, O.1    Gianola, D.2    Long, N.3    Weigel, K.A.4    Rosa, G.J.5    Avendaño, S.6
  • 9
    • 66249089985 scopus 로고    scopus 로고
    • Genome-assisted prediction of a quantitative trait measured in parents and progeny: Application to food conversion rate in chickens
    • González-Recio O., Gianola D., Rosa G.J., Weigel K.A., Kranis A. Genome-assisted prediction of a quantitative trait measured in parents and progeny: Application to food conversion rate in chickens. Genet. Sel. Evol. 2009, 41:3.
    • (2009) Genet. Sel. Evol. , vol.41 , pp. 3
    • González-Recio, O.1    Gianola, D.2    Rosa, G.J.3    Weigel, K.A.4    Kranis, A.5
  • 10
    • 67849094221 scopus 로고    scopus 로고
    • Genomic selection using low-density marker panels
    • Habier D., Fernando R.L., Dekkers J.C.M. Genomic selection using low-density marker panels. Genetics 2009, 182:343-353.
    • (2009) Genetics , vol.182 , pp. 343-353
    • Habier, D.1    Fernando, R.L.2    Dekkers, J.C.M.3
  • 12
    • 59349098163 scopus 로고    scopus 로고
    • Invited review: Genomic selection in dairy cattle: Progress and challenges
    • Hayes B.J., Bowman P.J., Chamberlain A.J., Goddard M.E. Invited review: Genomic selection in dairy cattle: Progress and challenges. J. Dairy Sci. 2009, 92:433-443.
    • (2009) J. Dairy Sci. , vol.92 , pp. 433-443
    • Hayes, B.J.1    Bowman, P.J.2    Chamberlain, A.J.3    Goddard, M.E.4
  • 13
    • 33646226097 scopus 로고
    • Linkage disequilibrium in finite populations
    • Hill W.G., Robertson A. Linkage disequilibrium in finite populations. Theor. Appl. Genet. 1968, 38:226-231.
    • (1968) Theor. Appl. Genet. , vol.38 , pp. 226-231
    • Hill, W.G.1    Robertson, A.2
  • 15
    • 58349099652 scopus 로고    scopus 로고
    • Economic evaluation of genomic breeding programs
    • König S., Simianer H., Willam A. Economic evaluation of genomic breeding programs. J. Dairy Sci. 2009, 92:382-391.
    • (2009) J. Dairy Sci. , vol.92 , pp. 382-391
    • König, S.1    Simianer, H.2    Willam, A.3
  • 16
    • 36849010721 scopus 로고    scopus 로고
    • Machine learning classification procedure for selecting SNPs in genomic selection: Application to early mortality in broilers
    • Long N., Gianola D., Rosa G.J., Weigel K.A., Avendano S. Machine learning classification procedure for selecting SNPs in genomic selection: Application to early mortality in broilers. J. Anim. Breed. Genet. 2007, 124:377-389.
    • (2007) J. Anim. Breed. Genet. , vol.124 , pp. 377-389
    • Long, N.1    Gianola, D.2    Rosa, G.J.3    Weigel, K.A.4    Avendano, S.5
  • 17
    • 77949826087 scopus 로고    scopus 로고
    • Accuracy of breeding values of 'unrelated' individuals predicted by dense SNP genotyping
    • Meuwissen T.H.E. Accuracy of breeding values of 'unrelated' individuals predicted by dense SNP genotyping. Genet. Sel. Evol. 2009, 41:35.
    • (2009) Genet. Sel. Evol. , vol.41 , pp. 35
    • Meuwissen, T.H.E.1
  • 18
    • 0035045051 scopus 로고    scopus 로고
    • Prediction of total genetic value using genome-wide dense marker maps
    • Meuwissen T.H.E., Hayes B.J., Goddard M.E. Prediction of total genetic value using genome-wide dense marker maps. Genetics 2001, 157:1819-1829.
    • (2001) Genetics , vol.157 , pp. 1819-1829
    • Meuwissen, T.H.E.1    Hayes, B.J.2    Goddard, M.E.3
  • 19
    • 33745885274 scopus 로고    scopus 로고
    • Strategy for applying genome-wide selection in dairy cattle
    • Schaeffer L.R. Strategy for applying genome-wide selection in dairy cattle. J. Anim. Breed. Genet. 2006, 123:218-223.
    • (2006) J. Anim. Breed. Genet. , vol.123 , pp. 218-223
    • Schaeffer, L.R.1
  • 20
    • 77958045362 scopus 로고    scopus 로고
    • Genomic selection and complex trait prediction using a fast EM algorithm applied to genome-wide markers
    • Shepherd R.K., Meuwissen T.H., Woolliams J.A. Genomic selection and complex trait prediction using a fast EM algorithm applied to genome-wide markers. BMC Bioinformatics 2010, 11:529.
    • (2010) BMC Bioinformatics , vol.11 , pp. 529
    • Shepherd, R.K.1    Meuwissen, T.H.2    Woolliams, J.A.3
  • 22
    • 55849133422 scopus 로고    scopus 로고
    • Efficient methods to compute genomic predictions
    • VanRaden P.M. Efficient methods to compute genomic predictions. J. Dairy Sci. 2008, 91:4414-4423.
    • (2008) J. Dairy Sci. , vol.91 , pp. 4414-4423
    • VanRaden, P.M.1
  • 25
    • 78649277825 scopus 로고    scopus 로고
    • Predictive ability of subsets of single nucleotide polymorphisms with and without parent average in US Holsteins
    • Vazquez A.I., Rosa G.J.M., Weigel K.A., de los Campos G., Gianola D., Allison D.B. Predictive ability of subsets of single nucleotide polymorphisms with and without parent average in US Holsteins. J. Dairy Sci. 2010, 93:5942-5949.
    • (2010) J. Dairy Sci. , vol.93 , pp. 5942-5949
    • Vazquez, A.I.1    Rosa, G.J.M.2    Weigel, K.A.3    de los Campos, G.4    Gianola, D.5    Allison, D.B.6
  • 26
    • 70349897495 scopus 로고    scopus 로고
    • Predictive ability of direct genomic values for lifetime net merit of Holstein sires using selected subsets of single nucleotide polymorphism markers
    • Weigel K.A., de los Campos G., González-Recio O., Naya H., Wu X.L., Long N., Rosa G.J., Gianola D. Predictive ability of direct genomic values for lifetime net merit of Holstein sires using selected subsets of single nucleotide polymorphism markers. J. Dairy Sci. 2009, 92:5248-5257.
    • (2009) J. Dairy Sci. , vol.92 , pp. 5248-5257
    • Weigel, K.A.1    de los Campos, G.2    González-Recio, O.3    Naya, H.4    Wu, X.L.5    Long, N.6    Rosa, G.J.7    Gianola, D.8
  • 27
    • 77952054021 scopus 로고    scopus 로고
    • Prediction of unobserved single nucleotide polymorphism genotypes of Jersey cattle using reference panels and population-based imputation algorithms
    • Weigel K.A., Van Tassell C.P., O'Connell J.R., VanRaden P.M., Wiggans G.R. Prediction of unobserved single nucleotide polymorphism genotypes of Jersey cattle using reference panels and population-based imputation algorithms. J. Dairy Sci. 2010, 93:2229-2238.
    • (2010) J. Dairy Sci. , vol.93 , pp. 2229-2238
    • Weigel, K.A.1    Van Tassell, C.P.2    O'Connell, J.R.3    VanRaden, P.M.4    Wiggans, G.R.5
  • 28
    • 77958536301 scopus 로고    scopus 로고
    • Best linear unbiased prediction of genomic breeding values using trait-specific marker-derived relationship matrix
    • Zhang Z., Liu J.F., Ding X., Bijma P., de Koning D.-J., Zhang Q. Best linear unbiased prediction of genomic breeding values using trait-specific marker-derived relationship matrix. PLoS ONE 2010, 5:e12648.
    • (2010) PLoS ONE , vol.5
    • Zhang, Z.1    Liu, J.F.2    Ding, X.3    Bijma, P.4    de Koning, D.-J.5    Zhang, Q.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.