-
1
-
-
43749098985
-
DNA methylation landscapes: Provocative insights from epigenomics
-
DOI 10.1038/nrg2341, PII NRG2341
-
Suzuki MM, Bird A (2008) DNA methylation landscapes: Provocative insights from epigenomics. Nat Rev Genet 9:465-476. (Pubitemid 351693975)
-
(2008)
Nature Reviews Genetics
, vol.9
, Issue.6
, pp. 465-476
-
-
Suzuki, M.M.1
Bird, A.2
-
2
-
-
0027342752
-
Structure, function and regulation of mammalian DNA methyltransferase
-
Leonhardt H, Bestor TH (1993) Structure, function and regulation of mammalian DNA methyltransferase. EXS 64:109-119.
-
(1993)
EXS
, vol.64
, pp. 109-119
-
-
Leonhardt, H.1
Bestor, T.H.2
-
4
-
-
0022540321
-
CpG-rich islands and the function of DNA methylation
-
Bird AP (1986) CpG-rich islands and the function of DNA methylation. Nature 321:209-213.
-
(1986)
Nature
, vol.321
, pp. 209-213
-
-
Bird, A.P.1
-
5
-
-
72849117741
-
A species-generalized probabilistic model-based definition of CpG islands
-
Irizarry RA, Wu H, Feinberg AP (2009) A species-generalized probabilistic model-based definition of CpG islands. Mamm Genome 20:674-680.
-
(2009)
Mamm Genome
, vol.20
, pp. 674-680
-
-
Irizarry, R.A.1
Wu, H.2
Feinberg, A.P.3
-
9
-
-
33750329496
-
CpGcluster: A distance-based algorithm for CpG-island detection
-
10.1186/1471-2105-7-446
-
Hackenberg M, et al. (2006) CpGcluster: A distance-based algorithm for CpG-island detection. BMC Bioinformatics, 10.1186/1471-2105-7-446.
-
(2006)
BMC Bioinformatics
-
-
Hackenberg, M.1
-
10
-
-
0031593246
-
CpG distribution patterns in methylated and non-methylated species
-
DOI 10.1016/S0378-1119(97)00542-8, PII S0378111997005428
-
Shimizu TS, Takahashi K, Tomita M (1997) CpG distribution patterns in methylated and non-methylated species. Gene 205:103-107. (Pubitemid 28029603)
-
(1997)
Gene
, vol.205
, Issue.1-2
, pp. 103-107
-
-
Shimizu, T.S.1
Takahashi, K.2
Tomita, M.3
-
11
-
-
45449108787
-
Genome-scale relationships between cytosine methylation and dinucleotide abundances in animals
-
Simmen MW (2008) Genome-scale relationships between cytosine methylation and dinucleotide abundances in animals. Genomics 92:33-40.
-
(2008)
Genomics
, vol.92
, pp. 33-40
-
-
Simmen, M.W.1
-
12
-
-
77952655502
-
Prediction of CpG-island function: CpG clustering vs. sliding-window methods
-
Hackenberg M, et al. (2010) Prediction of CpG-island function: CpG clustering vs. sliding-window methods. BMC Genomics 11:327.
-
(2010)
BMC Genomics
, vol.11
, pp. 327
-
-
Hackenberg, M.1
-
13
-
-
0027960055
-
Sp1 sites in the mouse aprt gene promoter are required to prevent methylation of the CpG island
-
Macleod D, Charlton J, Mullins J, Bird AP (1994) Sp1 sites in the mouse aprt gene promoter are required to prevent methylation of the CpG island. Genes Dev 8:2282-2292. (Pubitemid 24314290)
-
(1994)
Genes and Development
, vol.8
, Issue.19
, pp. 2282-2292
-
-
Macleod, D.1
Charlton, J.2
Mullins, J.3
Bird, A.P.4
-
14
-
-
34047116826
-
Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
-
DOI 10.1038/ng1990, PII NG1990
-
Weber M, et al. (2007) Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nat Genet 39:457-466. (Pubitemid 46514772)
-
(2007)
Nature Genetics
, vol.39
, Issue.4
, pp. 457-466
-
-
Weber, M.1
Hellmann, I.2
Stadler, M.B.3
Ramos, L.4
Paabo, S.5
Rebhan, M.6
Schubeler, D.7
-
15
-
-
64349091471
-
Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells
-
Ball MP, et al. (2009) Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells. Nat Biotechnol 27:361-368.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 361-368
-
-
Ball, M.P.1
-
16
-
-
77950527721
-
Optimized design and data analysis of tag-based cytosine methylation assays
-
Suzuki M, et al. (2010) Optimized design and data analysis of tag-based cytosine methylation assays. Genome Biol 11:R36.
-
(2010)
Genome Biol
, vol.11
-
-
Suzuki, M.1
-
17
-
-
0033865243
-
Identification of a methylation imprint mark within the mouse gnas locus
-
DOI 10.1128/MCB.20.16.5808-5817.2000
-
Liu J, Yu S, Litman D, Chen W, Weinstein LS (2000) Identification of a methylation imprint mark within the mouse Gnas locus. Mol Cell Biol 20:5808-5817. (Pubitemid 30613030)
-
(2000)
Molecular and Cellular Biology
, vol.20
, Issue.16
, pp. 5808-5817
-
-
Liu, J.1
Yu, S.2
Litman, D.3
Chen, W.4
Weinstein, L.S.5
-
18
-
-
46949098742
-
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
-
DOI 10.1038/nbt1414, PII NBT1414
-
Down TA, et al. (2008) A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis. Nat Biotechnol 26:779-785. (Pubitemid 351961453)
-
(2008)
Nature Biotechnology
, vol.26
, Issue.7
, pp. 779-785
-
-
Down, T.A.1
Rakyan, V.K.2
Turner, D.J.3
Flicek, P.4
Li, H.5
Kulesha, E.6
Graf, S.7
Johnson, N.8
Herrero, J.9
Tomazou, E.M.10
Thorne, N.P.11
Backdahl, L.12
Herberth, M.13
Howe, K.L.14
Jackson, D.K.15
Miretti, M.M.16
Marioni, J.C.17
Birney, E.18
Hubbard, T.J.P.19
Durbin, R.20
Tavare, S.21
Beck, S.22
more..
-
19
-
-
77954224132
-
Chromatin and sequence features that define the fine and gross structure of genomic methylation patterns
-
Edwards JR, et al. (2010) Chromatin and sequence features that define the fine and gross structure of genomic methylation patterns. Genome Res 20:972-980.
-
(2010)
Genome Res
, vol.20
, pp. 972-980
-
-
Edwards, J.R.1
-
20
-
-
70649095120
-
Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts
-
Doi A, et al. (2009) Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts. Nat Genet 41:1350-1353.
-
(2009)
Nat Genet
, vol.41
, pp. 1350-1353
-
-
Doi, A.1
-
21
-
-
66149147557
-
Developmental programming of CpG island methylation profiles in the human genome
-
Straussman R, et al. (2009) Developmental programming of CpG island methylation profiles in the human genome. Nat Struct Mol Biol 16:564-571.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 564-571
-
-
Straussman, R.1
-
22
-
-
38349153236
-
Vertebrate conserved non coding DNA regions have a high persistence length and a short persistence time
-
Retelska D, Beaudoing E, Notredame C, Jongeneel CV, Bucher P (2007) Vertebrate conserved non coding DNA regions have a high persistence length and a short persistence time. BMC Genomics 8:398.
-
(2007)
BMC Genomics
, vol.8
, pp. 398
-
-
Retelska, D.1
Beaudoing, E.2
Notredame, C.3
Jongeneel, C.V.4
Bucher, P.5
-
23
-
-
78651320424
-
The UCSC Genome Browser database: Update 2011
-
Fujita PA, et al. (2011) The UCSC Genome Browser database: Update 2011. Nucleic Acids Res 39(Database issue):D876-D882.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.DATABASE ISSUE
-
-
Fujita, P.A.1
-
24
-
-
38549087902
-
ORegAnno: An open-access community-driven resource for regulatory annotation
-
Open Regulatory Annotation Consortium
-
Griffith OL, et al.; Open Regulatory Annotation Consortium (2008) ORegAnno: An open-access community-driven resource for regulatory annotation. Nucleic Acids Res 36(Database issue):D107-D113.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.DATABASE ISSUE
-
-
Griffith, O.L.1
-
25
-
-
49249110970
-
Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing
-
Wederell ED, et al. (2008) Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing. Nucleic Acids Res 36:4549-4564.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 4549-4564
-
-
Wederell, E.D.1
-
26
-
-
38049007472
-
Genome-wide identification of estrogen receptor alpha-binding sites in mouse liver
-
Gao H, Fält S, Sandelin A, Gustafsson JA, Dahlman-Wright K (2008) Genome-wide identification of estrogen receptor alpha-binding sites in mouse liver. Mol Endocrinol 22:10-22.
-
(2008)
Mol Endocrinol
, vol.22
, pp. 10-22
-
-
Gao, H.1
Fält, S.2
Sandelin, A.3
Gustafsson, J.A.4
Dahlman-Wright, K.5
-
27
-
-
77955149398
-
Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver
-
Hoffman BG, et al. (2010) Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver. Genome Res 20:1037-1051.
-
(2010)
Genome Res
, vol.20
, pp. 1037-1051
-
-
Hoffman, B.G.1
-
28
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang W, Sherman BT, Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4:44-57.
-
(2009)
Nat Protoc
, vol.4
, pp. 44-57
-
-
Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
29
-
-
77951116072
-
CpG islands influence chromatin structure via the CpG-binding protein Cfp1
-
Thomson JP, et al. (2010) CpG islands influence chromatin structure via the CpG-binding protein Cfp1. Nature 464:1082-1086.
-
(2010)
Nature
, vol.464
, pp. 1082-1086
-
-
Thomson, J.P.1
|