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Volumn 122, Issue 8, 2011, Pages 1605-1616

Gene and QTL detection in a three-way barley cross under selection by a mixed model with kinship information using SNPs

Author keywords

[No Author keywords available]

Indexed keywords

AKAIKE INFORMATION CRITERION; CANDIDATE GENES; COANCESTRY; GENETIC DRIFTS; GENETIC RELATEDNESS; GENOTYPIC EFFECTS; INBRED LINE; LINKAGE DISEQUILIBRIUM; MATRIX; MIXED MODELS; PARENTAL LINES; QUANTITATIVE TRAIT LOCUS; SINGLE NUCLEOTIDE POLYMORPHISMS;

EID: 79959313483     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-011-1558-z     Document Type: Article
Times cited : (52)

References (50)
  • 3
    • 37249055906 scopus 로고    scopus 로고
    • A mixed-model quantitative trait loci (QTL) analysis for multiple-environment trial data using environmental covariables for QTL-by-environment interactions, with an example in maize
    • Boer MP, Wright D, Feng L, Podlich DW, Luo L, Cooper M, van Eeuwijk FA (2007) A mixed-model quantitative trait loci (QTL) analysis for multiple-environment trial data using environmental covariables for QTL-by-environment interactions, with an example in maize. Genetics 177: 1801-1813.
    • (2007) Genetics , vol.177 , pp. 1801-1813
    • Boer, M.P.1    Wright, D.2    Feng, L.3    Podlich, D.W.4    Luo, L.5    Cooper, M.6    van Eeuwijk, F.A.7
  • 4
    • 0036226073 scopus 로고    scopus 로고
    • Molecular mapping of major genes and quantitative trait loci determining flowering time in response to photoperiod in barley
    • Borner A, Buck-Sorlin GH, Hayes PM, Malyshev S, Korzun V (2002) Molecular mapping of major genes and quantitative trait loci determining flowering time in response to photoperiod in barley. Plant Breed 121: 129-132.
    • (2002) Plant Breed , vol.121 , pp. 129-132
    • Borner, A.1    Buck-Sorlin, G.H.2    Hayes, P.M.3    Malyshev, S.4    Korzun, V.5
  • 5
    • 33644768385 scopus 로고    scopus 로고
    • The effect of semi-dwarf genes on root system size in field-grown barley
    • Chloupek O, Forster B, Thomas W (2006) The effect of semi-dwarf genes on root system size in field-grown barley. Theor Appl Genet 112: 779-786.
    • (2006) Theor Appl Genet , vol.112 , pp. 779-786
    • Chloupek, O.1    Forster, B.2    Thomas, W.3
  • 7
    • 10844275576 scopus 로고    scopus 로고
    • Quantitative trait loci (QTL) detection in multicross inbred designs: recovering QTL identical-by-descent status information from marker data
    • Crepieux S, Lebreton C, Servin B, Charmet G (2004) Quantitative trait loci (QTL) detection in multicross inbred designs: recovering QTL identical-by-descent status information from marker data. Genetics 168: 1737-1749.
    • (2004) Genetics , vol.168 , pp. 1737-1749
    • Crepieux, S.1    Lebreton, C.2    Servin, B.3    Charmet, G.4
  • 9
    • 32644458931 scopus 로고    scopus 로고
    • Heritable basis for some genotype-environment stability statistics: inferences from QTL analysis of heading date in two-rowed barley
    • Emebiri LC, Moody DB (2006) Heritable basis for some genotype-environment stability statistics: inferences from QTL analysis of heading date in two-rowed barley. Field Crops Res 96: 243-251.
    • (2006) Field Crops Res , vol.96 , pp. 243-251
    • Emebiri, L.C.1    Moody, D.B.2
  • 11
    • 33646942472 scopus 로고
    • A simple regression method for mapping quantitative trait loci in line crosses using flanking markers
    • Haley CS, Knott SA (1992) A simple regression method for mapping quantitative trait loci in line crosses using flanking markers. Heredity 69: 315-324.
    • (1992) Heredity , vol.69 , pp. 315-324
    • Haley, C.S.1    Knott, S.A.2
  • 12
    • 0028348164 scopus 로고
    • High resolution of quantitative traits into multiple loci via interval mapping
    • Jansen RC, Stam P (1994) High resolution of quantitative traits into multiple loci via interval mapping. Genetics 136: 1447-1455.
    • (1994) Genetics , vol.136 , pp. 1447-1455
    • Jansen, R.C.1    Stam, P.2
  • 14
    • 0031423792 scopus 로고    scopus 로고
    • Mapping quantitative trait loci with dominant and missing markers in various crosses from two inbred lines
    • Jiang CJ, Zeng ZB (1997) Mapping quantitative trait loci with dominant and missing markers in various crosses from two inbred lines. Genetica 101: 47-58.
    • (1997) Genetica , vol.101 , pp. 47-58
    • Jiang, C.J.1    Zeng, Z.B.2
  • 15
    • 0024508964 scopus 로고
    • Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps
    • Lander ES, Botstein D (1989) Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121: 185-199.
    • (1989) Genetics , vol.121 , pp. 185-199
    • Lander, E.S.1    Botstein, D.2
  • 16
    • 0028894529 scopus 로고
    • RFLP mapping of five major genes and eight quantiative trait loci controlling flowering time in a winter spring barley (Hordeum vulgare L.) cross
    • Laurie D, Pratchett N, Bezant J, Snape J (1995) RFLP mapping of five major genes and eight quantiative trait loci controlling flowering time in a winter spring barley (Hordeum vulgare L.) cross. Genome 38: 575-585.
    • (1995) Genome , vol.38 , pp. 575-585
    • Laurie, D.1    Pratchett, N.2    Bezant, J.3    Snape, J.4
  • 17
    • 0027130467 scopus 로고
    • Assignment of the denso Dwargni gene to the long arm of chromosome 3(3H) of barley by use of RFLP markers
    • Laurie DA, Pratchett N, Romero C, Simpson E, Snape J (1993) Assignment of the denso Dwargni gene to the long arm of chromosome 3(3H) of barley by use of RFLP markers. Plant Breed 111: 198-203.
    • (1993) Plant Breed , vol.111 , pp. 198-203
    • Laurie, D.A.1    Pratchett, N.2    Romero, C.3    Simpson, E.4    Snape, J.5
  • 18
    • 33846494048 scopus 로고    scopus 로고
    • A modified algorithm for the improvement of composite interval mapping
    • Li H, Ye G, Wang J (2007) A modified algorithm for the improvement of composite interval mapping. Genetics 175: 361-374.
    • (2007) Genetics , vol.175 , pp. 361-374
    • Li, H.1    Ye, G.2    Wang, J.3
  • 20
    • 33846933954 scopus 로고    scopus 로고
    • Methods for linkage disequilibrium mapping in crops
    • Mackay I, Powell W (2007) Methods for linkage disequilibrium mapping in crops. Trends Plant Sci 12: 57-63.
    • (2007) Trends Plant Sci , vol.12 , pp. 57-63
    • Mackay, I.1    Powell, W.2
  • 21
    • 42149128810 scopus 로고    scopus 로고
    • A multi-trait multi-environment QTL mixed model with an application to drought and nitrogen stress trials in maize (Zea mays L.)
    • Malosetti M, Ribaut J, Vargas M, Crossa J, van Eeuwijk F (2008) A multi-trait multi-environment QTL mixed model with an application to drought and nitrogen stress trials in maize (Zea mays L.). Euphytica 161: 241-257.
    • (2008) Euphytica , vol.161 , pp. 241-257
    • Malosetti, M.1    Ribaut, J.2    Vargas, M.3    Crossa, J.4    van Eeuwijk, F.5
  • 22
    • 34247853365 scopus 로고    scopus 로고
    • A mixed-model approach to association mapping using pedigree information with an illustration of resistance to Phytophthora infestans in potato
    • Malosetti M, van der Linden CG, Vosman B, van Eeuwijk FA (2007) A mixed-model approach to association mapping using pedigree information with an illustration of resistance to Phytophthora infestans in potato. Genetics 175: 879-889.
    • (2007) Genetics , vol.175 , pp. 879-889
    • Malosetti, M.1    van der Linden, C.G.2    Vosman, B.3    van Eeuwijk, F.A.4
  • 23
    • 4544317910 scopus 로고    scopus 로고
    • Mixed models including environmental covariables for studying QTL by environment interaction
    • Malosetti M, Voltas J, Romagosa I, Ullrich SE, van Eeuwijk FA (2004) Mixed models including environmental covariables for studying QTL by environment interaction. Euphytica 137: 139-145.
    • (2004) Euphytica , vol.137 , pp. 139-145
    • Malosetti, M.1    Voltas, J.2    Romagosa, I.3    Ullrich, S.E.4    van Eeuwijk, F.A.5
  • 27
    • 42149130256 scopus 로고    scopus 로고
    • A mixed model QTL analysis for a complex cross population consisting of a half diallel of two-way hybrids in Arabidopsis thaliana: analysis of simulated data
    • Paulo M-J, Boer M, Huang X, Koornneef M, van Eeuwijk F (2008) A mixed model QTL analysis for a complex cross population consisting of a half diallel of two-way hybrids in Arabidopsis thaliana: analysis of simulated data. Euphytica 161: 107-114.
    • (2008) Euphytica , vol.161 , pp. 107-114
    • Paulo, M.-J.1    Boer, M.2    Huang, X.3    Koornneef, M.4    van Eeuwijk, F.5
  • 29
    • 32344445592 scopus 로고    scopus 로고
    • Selection in cultivar trials-is it ignorable?
    • Piepho H-P, Mohring J (2005) Selection in cultivar trials-is it ignorable? Crop Sci 46: 192-201.
    • (2005) Crop Sci , vol.46 , pp. 192-201
    • Piepho, H.-P.1    Mohring, J.2
  • 30
    • 42149153862 scopus 로고    scopus 로고
    • BLUP for phenotypic selection in plant breeding and variety testing
    • Piepho H, Möhring J, Melchinger A, Büchse A (2008) BLUP for phenotypic selection in plant breeding and variety testing. Euphytica 161: 209-228.
    • (2008) Euphytica , vol.161 , pp. 209-228
    • Piepho, H.1    Möhring, J.2    Melchinger, A.3    Büchse, A.4
  • 31
    • 16244419744 scopus 로고    scopus 로고
    • Statistical tests for QTL and QTL-by-environment effects in segregating populations derived from line crosses
    • Piepho HP (2005) Statistical tests for QTL and QTL-by-environment effects in segregating populations derived from line crosses. Theor Appl Genet 110: 561-566.
    • (2005) Theor Appl Genet , vol.110 , pp. 561-566
    • Piepho, H.P.1
  • 32
    • 37249073867 scopus 로고    scopus 로고
    • Gene expression quantitative trait locus analysis of 16 000 barley genes reveals a complex pattern of genome-wide transcriptional regulation
    • Potokina E, Druka A, Luo Z, Wise R, Waugh R, Kearsey M (2008) Gene expression quantitative trait locus analysis of 16 000 barley genes reveals a complex pattern of genome-wide transcriptional regulation. Plant J 53: 90-101.
    • (2008) Plant J , vol.53 , pp. 90-101
    • Potokina, E.1    Druka, A.2    Luo, Z.3    Wise, R.4    Waugh, R.5    Kearsey, M.6
  • 33
    • 84966149434 scopus 로고
    • The effects of major genes on quantitatively varying characters in barley 2. The denso and daylength response loci
    • Powell W, Caligari PDS, Thomas WTB, Jinks JL (1985) The effects of major genes on quantitatively varying characters in barley 2. The denso and daylength response loci. Heredity 54: 349-352.
    • (1985) Heredity , vol.54 , pp. 349-352
    • Powell, W.1    Caligari, P.D.S.2    Thomas, W.T.B.3    Jinks, J.L.4
  • 34
    • 33748808111 scopus 로고    scopus 로고
    • Quantitative trait loci controlling agronomic traits in recombinant inbred lines from a cross of oriental- and occidental-type barley cultivars
    • Sameri M, Takeda K, Komatsuda T (2006) Quantitative trait loci controlling agronomic traits in recombinant inbred lines from a cross of oriental- and occidental-type barley cultivars. Breed Sci 56: 243-252.
    • (2006) Breed Sci , vol.56 , pp. 243-252
    • Sameri, M.1    Takeda, K.2    Komatsuda, T.3
  • 35
    • 68349146530 scopus 로고    scopus 로고
    • An application of high-throughput SNP genotyping for barley genome mapping and characterization of recombinant chromosome substitution lines
    • Sato K, Takeda K (2009) An application of high-throughput SNP genotyping for barley genome mapping and characterization of recombinant chromosome substitution lines. Theor Appl Genet 119: 613-619.
    • (2009) Theor Appl Genet , vol.119 , pp. 613-619
    • Sato, K.1    Takeda, K.2
  • 37
    • 0001963804 scopus 로고
    • Genetics of earliness and growth habit in barley
    • R. A. Nilan (Ed.), Washington: Washington State University Press
    • Takahashi R, Yasuda S (1971) Genetics of earliness and growth habit in barley. In: Nilan RA (ed) Barley Genetics II Proc 2nd International Barley Genetics Symposium. Washington State University Press, Washington, pp 388-408.
    • (1971) Barley Genetics II Proc 2nd International Barley Genetics Symposium , pp. 388-408
    • Takahashi, R.1    Yasuda, S.2
  • 38
    • 84966165186 scopus 로고
    • The chromosomal location of the dwarfing gene present in the spring barley variety golden promise
    • Thomas WTB, Powell W, Wood W (1984) The chromosomal location of the dwarfing gene present in the spring barley variety golden promise. Heredity 53: 177-183.
    • (1984) Heredity , vol.53 , pp. 177-183
    • Thomas, W.T.B.1    Powell, W.2    Wood, W.3
  • 39
    • 38849196800 scopus 로고    scopus 로고
    • Estimation of quantitative genetic parameters
    • Thompson R (2008) Estimation of quantitative genetic parameters. Proc R Soc B Biol Sci 275: 679-686.
    • (2008) Proc R Soc B Biol Sci , vol.275 , pp. 679-686
    • Thompson, R.1
  • 43
    • 61849166174 scopus 로고    scopus 로고
    • Quantitative trait locus mapping can benefit from segregation distortion
    • Xu S (2008) Quantitative trait locus mapping can benefit from segregation distortion. Genetics 180: 2201-2208.
    • (2008) Genetics , vol.180 , pp. 2201-2208
    • Xu, S.1
  • 44
    • 77749315022 scopus 로고    scopus 로고
    • Mapping quantitative trait locis using distorted markers
    • Article 410825
    • Xu S, Hu Z (2009) Mapping quantitative trait locis using distorted markers. Int J Plant Genomics (Article 410825).
    • (2009) Int J Plant Genomics
    • Xu, S.1    Hu, Z.2
  • 46
    • 0028224156 scopus 로고
    • Precision mapping of quantitative trait loci
    • Zeng ZB (1994) Precision mapping of quantitative trait loci. Genetics 136: 1457-1468.
    • (1994) Genetics , vol.136 , pp. 1457-1468
    • Zeng, Z.B.1
  • 47
    • 34248993659 scopus 로고    scopus 로고
    • Power and precision of alternate methods for linkage disequilibrium mapping of quantitative trait loci
    • Zhao HH, Fernando RL, Dekkers JCM (2007a) Power and precision of alternate methods for linkage disequilibrium mapping of quantitative trait loci. Genetics 175: 1975-1986.
    • (2007) Genetics , vol.175 , pp. 1975-1986
    • Zhao, H.H.1    Fernando, R.L.2    Dekkers, J.C.M.3
  • 49
    • 39849084228 scopus 로고    scopus 로고
    • An EM algorithm for mapping segregation distortion loci
    • Zhu C, Zhang Y-M (2007) An EM algorithm for mapping segregation distortion loci. BMC Genet 8: 82.
    • (2007) BMC Genet , vol.8 , pp. 82
    • Zhu, C.1    Zhang, Y.-M.2


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