메뉴 건너뛰기




Volumn , Issue , 2011, Pages 89-93

Rapid computation of distance estimators from nucleotide and amino acid alignments

Author keywords

GPU; parallelization; phylogenetic distance estimator; phylogenetic inference; vectorization

Indexed keywords

DISTANCE ESTIMATORS; GPU; PARALLELIZATIONS; PHYLOGENETIC INFERENCE; VECTORIZATION;

EID: 79959293874     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1982185.1982208     Document Type: Conference Paper
Times cited : (7)

References (18)
  • 1
  • 4
    • 33947657892 scopus 로고    scopus 로고
    • Fast computation of distance estimators
    • I. Elias and J. Lagergren. Fast computation of distance estimators. Bioinformatics, 8:89, 2007.
    • (2007) Bioinformatics , vol.8 , pp. 89
    • Elias, I.1    Lagergren, J.2
  • 5
    • 85013720758 scopus 로고    scopus 로고
    • Fast hierarchical clustering and other applications of dynamic closest pairs
    • David Eppstein. Fast hierarchical clustering and other applications of dynamic closest pairs. Journal of Experimental Algorithmics, 5:1, 2000.
    • (2000) Journal of Experimental Algorithmics , vol.5 , pp. 1
    • Eppstein, D.1
  • 7
    • 33644876020 scopus 로고    scopus 로고
    • Pfam: Clans, web tools and services
    • R. D. Finn et al. Pfam: clans, web tools and services. Nucleic Acids Research, Database Issue 34:D247-D251, 2006.
    • (2006) Nucleic Acids Research , Issue.34
    • Finn, R.D.1
  • 8
  • 9
    • 0036857358 scopus 로고    scopus 로고
    • QuickTree: Building huge neighbour-joining trees of protein sequences
    • K. Howe, A. Bateman, and R. Durbin. QuickTree: Building huge neighbour-joining trees of protein sequences. Bioinformatics, 18(11):1546-1547, 2002. (Pubitemid 35422615)
    • (2002) Bioinformatics , vol.18 , Issue.11 , pp. 1546-1547
    • Howe, K.1    Bateman, A.2    Durbin, R.3
  • 11
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial dna in humans and chimpanzees
    • M. Nei K. Tamura. Estimation of the number of nucleotide substitutions in the control region of mitochondrial dna in humans and chimpanzees. Molecular Biology and Evolution, 10(3):512-526, 1993.
    • (1993) Molecular Biology and Evolution , vol.10 , Issue.3 , pp. 512-526
    • Nei, M.1    Tamura, K.2
  • 12
    • 0019296687 scopus 로고
    • A simple model for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • M. Kimura. A simple model for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 1980.
    • (1980) Journal of Molecular Evolution
    • Kimura, M.1
  • 14
    • 0036080356 scopus 로고    scopus 로고
    • Embl-align: A new public nucleotide and amino acid multiple sequence alignment database
    • V. Lombard et al. Embl-align: a new public nucleotide and amino acid multiple sequence alignment database. Bioinformatics, 18(5):753-764, 2002.
    • (2002) Bioinformatics , vol.18 , Issue.5 , pp. 753-764
    • Lombard, V.1
  • 15
    • 0000028423 scopus 로고
    • A quantitative approach to a problem in classification
    • C. D. Michener and R. R. Sokal. A quantitative approach to a problem in classification. Evolution, 11:130-162, 1957.
    • (1957) Evolution , vol.11 , pp. 130-162
    • Michener, C.D.1    Sokal, R.R.2
  • 16
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • N. Saitou and M. Nei. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4:406-425, 1987.
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.