AMaCAID: A useful tool for Accurate Marker Choice for Accession Identification and Discrimination

Molecular Ecology Resources

Volumn 11, Issue 4, 2011, Pages 733-738

  Caroli, S ^a   Santoni, S ^a   Ronfort, Joëlle ^a  

^a UMR AGAP   (France)

Author keywords

Marker combinations; Medicago truncatula; Molecular discrimination; Plant genetic resource center; R program

Indexed keywords

ARTICLE; BARREL MEDIC; BIOLOGY; CLUSTER ANALYSIS; COMPUTER PROGRAM; GENETICS; GENOTYPE; METHODOLOGY; MULTILOCUS SEQUENCE TYPING;

CLUSTER ANALYSIS; COMPUTATIONAL BIOLOGY; GENOTYPE; MEDICAGO TRUNCATULA; MULTILOCUS SEQUENCE TYPING; SOFTWARE;

MEDICAGO TRUNCATULA;

EID: 79959196637     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2011.02993.x     Document Type: Article

References (14)

1. Anderson JA, Churchill GA, Autroque JE, Tanksley SD, Swells ME (1993) Optimising selection for plant linkage map. Genome, 36, 181-186.
2. Baquerizo-Audiot E, Desplanque B, Prosperi JM, Santoni S (2001) Characterization of microsatellite loci in the diploid legume Medicago truncatula (barrel medic). Molecular Ecology Note, 1, 1-3.
3. Bataillon T, David J, Schoen DJ (1996) Neutral genetic markers and conservation genetics: simulated germplasm collections. Genetics, 144, 401-417.
4. Bonnin I, Ronfort J, Wozniak F, Olivieri I (2001) Spatial effects and rare outcrossing events in Medicago truncatula (Fabaceae). Molecular Ecology, 10, 1371-1383.
5. Brown AHD (1989) Core collections: a practical approach to genetic resources management. Genome, 31, 318-324.
6. Hawkes JG, Maxted N, Ford-Lloyd BV (2000) The Ex Situ Conservation of Plant GeneticResources. Kluwer Academic Publishers, Dordrecht, The Netherlands, 250 pp.
7. Julve Ph (1998) Baseflor. Index botanique, écologique et chorologique de la Flore de France. Programme Catminat.
8. Kejun L, Muse SV (2005) PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics Applications Note, 21, 2128-2129.
9. McKhann HI, Camilleri C, Berard A et al. (2004) Nested core collections maximizing genetic diversity in Arabidopsis thaliana. The Plant Journal, 38, 193-202.
10. Nei M (1973) Analysis of gene diversity in subdivised populations. Proceedings of the National Academy of Sciences, 70, 3321-3323.
11. R Development Core Team (2009) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
12. Ronfort J, Bataillon T, Santoni S, Delalande M, David J, Prosperi JM (2006) Microsatellite diversity and broad scale geographic structure in a model legume: building a set of nested core collection for studying naturally occurring variation in Medicago truncatula. BMC Plant Biology, 6, doi:.
13. Siol M, Prosperi JM, Bonnin I, Ronfort J (2008) How multilocus genotypic pattern helps to understand the history of selfing populations: a case study in Medicago truncatula. Heredity, 100, 517-525.
14. Tessier C, David J, This P, Boursiquot JM, Charrier A (1999) Optimization of the choice of molecular markers for varietal identification in Vitis vinifera L. Theoretical Applied Genetics, 98, 171-177.