Highlights of the optical highlighter fluorescent proteins

Journal of Microscopy

Volumn 243, Issue 1, 2011, Pages 1-7

  Patterson, George H ^a  

^a NATIONAL INSTITUTE OF BIOMEDICAL IMAGING AND BIOENGINEERING   (United States)

Author keywords

Fluorescence microscopy; Photoactivation; Photoconversion; Photoswitching

Indexed keywords

FLUORESCENCE; MOLECULES; PROTEINS; STOCHASTIC SYSTEMS;

FLUORESCENT PROTEIN; LOCALISATION; MICROSCOPY TECHNIQUE; MOLECULAR LOCALIZATION; OPTICAL-; PHOTO ACTIVATIONS; PHOTO-ACTIVATED; PHOTOCONVERSION; PHOTOSWITCHING; SUPER-RESOLUTION MICROSCOPY;

FLUORESCENCE MICROSCOPY;

CYAN FLUORESCENT PROTEIN; CYAN FLUORESCENT PROTEIN 2; GREEN FLUORESCENT PROTEIN; PHOTOACTIVE YELLOW PROTEIN; PROREIN MRFP1 1; PROTEIN; PROTEIN BSDRONPA; PROTEIN DENDRA; PROTEIN DENDRA2; PROTEIN DRONPA; PROTEIN DRONPA 2; PROTEIN DRONPA 3; PROTEIN EOSFP; PROTEIN IRISFP; PROTEIN KAEDE; PROTEIN KIKGR; PROTEIN KIKUME; PROTEIN MCHERRY1; PROTEIN MEOS2; PROTEIN PADRON; PROTEIN RSCHERRY; PROTEIN RSCHERRYREV; PROTEIN RSFASTLIME; PROTEIN TAGRFP; PROTEIN TDEOSFP; UNCLASSIFIED DRUG;

ARTICLE; FLUORESCENCE MICROSCOPY; PHOTOACTIVATION; PHOTOCONVERSION; PHOTODYNAMICS; PHOTOSWITCHING; PRIORITY JOURNAL;

EID: 79958829973     PISSN: 00222720     EISSN: 13652818     Source Type: Journal    
DOI: 10.1111/j.1365-2818.2011.03505.x     Document Type: Article

References (33)

1. Adam, V., Lelimousin, M., Boehme, S., et al. (2008) Structural characterization of IrisFP, an optical highlighter undergoing multiple photo-induced transformations. Proc. Natl. Acad. Sci. USA 105, 18343-18348.
2. Ando, R., Hama, H., Yamamoto-Hino, M., Mizuno, H. & Miyawaki, A. (2002) An optical marker based on the UV-induced green-to-red photoconversion of a fluorescent protein. Proc. Natl. Acad. Sci. USA 99, 12651-12656.
3. Ando, R., Mizuno, H. & Miyawaki, A. (2004) Regulated fast nucleocytoplasmic shuttling observed by reversible protein highlighting. Science 306, 1370-1373.
4. Ando, R., Flors, C., Mizuno, H., Hofkens, J. & Miyawaki, A. (2007) Highlighted generation of fluorescence signals using simultaneous two-color irradiation on Dronpa mutants. Biophys. J. 92, L97-L99.
5. Andresen, M., Stiel, A.C., Folling, J., et al. (2008) Photoswitchable fluorescent proteins enable monochromatic multilabel imaging and dual color fluorescence nanoscopy. Nat. Biotechnol. 26, 1035-1040.
6. Biteen, J.S., Thompson, M.A., Tselentis, N.K., Bowman, G.R., Shapiro, L. & Moerner, W.E. (2008) Super-resolution imaging in live Caulobacter crescentus cells using photoswitchable EYFP. Nat. Methods 5, 947-949.
7. Campbell, R.E., Tour, O., Palmer, A. E., Steinbach, P.A., Baird, G.S., Zacharias, D.A. & Tsien, R.Y. (2002) A monomeric red fluorescent protein. Proc. Natl. Acad. Sci. USA 99, 7877-7882.
8. Chudakov, D.M., Verkhusha, V.V., Staroverov, D.B., Souslova, E.A., Lukyanov, S. & Lukyanov, K.A. (2004) Photoswitchable cyan fluorescent protein for protein tracking. Nat. Biotechnol. 22, 1435-1439.
9. Dickson, R.M., Cubitt, A.B., Tsien, R.Y. & Moerner, W E. (1997) On/off blinking and switching behaviour of single molecules of green fluorescent protein. Nature 388, 355-358.
10. Ehrig, T., O'Kane, D.J. & Prendergast, F.G. (1995) Green-fluorescent protein mutants with altered fluorescence excitation spectra. FEBS Lett. 367, 163-166.
11. Folling, J., Bossi, M., Bock, H., et al. (2008) Fluorescence nanoscopy by ground-state depletion and single-molecule return. Nat. Methods 5, 943-945.
12. Gurskaya, N.G., Verkhusha, V.V., Shcheglov, A.S., et al. (2006) Engineering of a monomeric green-to-red photoactivatable fluorescent protein induced by blue light. Nat. Biotechnol. 24, 461-465.
13. Habuchi, S., Tsutsui, H., Kochaniak, A.B., Miyawaki, A. & van Oijen, A.M. (2008) mKikGR, a monomeric photoswitchable fluorescent protein. PLoS One 3, e3944.
14. Haupts, U., Maiti, S., Schwille, P. & Webb, W.W. (1998) Dynamics of fluorescence fluctuations in green fluorescent protein observed by fluorescence correlation spectroscopy. Proc. Natl. Acad. Sci. USA 95, 13573-13578.
15. Heikal, A.A., Hess, S.T., Baird, G.S., Tsien, R.Y. & Webb, W.W. (2000) Molecular spectroscopy and dynamics of intrinsically fluorescent proteins: coral red (dsRed) and yellow (Citrine). Proc. Natl. Acad. Sci. USA 97, 11996-12001.
16. Heim, R., Prasher, D.C. & Tsien, R.Y. (1994) Wavelength mutations and posttranslational autoxidation of green fluorescent protein. Proc. Natl. Acad. Sci. USA 91, 12501-12504.
17. Kremers, G.J., Hazelwood, K.L., Murphy, C.S., Davidson, M.W. & Piston, D.W. (2009) Photoconversion in orange and red fluorescent proteins. Nat. Methods 6, 355-358.
18. Labas, Y.A., Gurskaya, N.G., Yanushevich, Y.G., Fradkov, A.F., Lukyanov, K.A., Lukyanov, S.A. & Matz, M.V. (2002) Diversity and evolution of the green fluorescent protein family. Proc. Natl. Acad. Sci. USA 99, 4256-4261.
19. Lippincott-Schwartz, J. & Patterson, G.H. (2009) Photoactivatable fluorescent proteins for diffraction-limited and super-resolution imaging. Trends Cell Biol. 19, 555-565.
20. Lukyanov, K.A., Chudakov, D.M., Lukyanov, S. & Verkhusha, V.V. (2005) Innovation: photoactivatable fluorescent proteins. Nat. Rev. Mol. Cell Biol. 6, 885-891.
21. McKinney, S.A., Murphy, C.S., Hazelwood, K.L., Davidson, M.W. & Looger, L.L. (2009) A bright and photostable photoconvertible fluorescent protein. Nat. Methods 6, 131-133.
22. Merzlyak, E.M., Goedhart, J., Shcherbo, D., et al. (2007) Bright monomeric red fluorescent protein with an extended fluorescence lifetime. Nat. Methods 4, 555-557.
23. Patterson, G.H. (2009) Fluorescence microscopy below the diffraction limit. Semin. Cell Dev. Biol. 20, 886-893.
24. Patterson, G. H. & Lippincott-Schwartz, J. (2002) A photoactivatable GFP for selective photolabeling of proteins and cells. Science 297, 1873-1877.
25. Schwille, P., Kummer, S., Heikal, A. A., Moerner, W.E. & Webb, W.W. (2000) Fluorescence correlation spectroscopy reveals fast optical excitation-driven intramolecular dynamics of yellow fluorescent proteins. Proc. Natl. Acad. Sci. USA 97, 151-156.
26. Stiel, A.C., Andresen, M., Bock, H., et al. (2008) Generation of monomeric reversibly switchable red fluorescent proteins for far-field fluorescence nanoscopy. Biophys. J. 95, 2989-2997.
27. Stiel, A.C., Trowitzsch, S., Weber, G., et al. (2007) 1.8 A bright-state structure of the reversibly switchable fluorescent protein Dronpa guides the generation of fast switching variants. Biochem. J. 402, 35-42.
28. Subach, F.V., Patterson, G.H., Manley, S., Gillette, J.M., Lippincott-Schwartz, J. & Verkhusha, V.V. (2009) Photoactivatable mCherry for high-resolution two-color fluorescence microscopy. Nat. Methods 6, 153-159.
29. Subach, F.V., Patterson, G.H., Renz, M., Lippincott-Schwartz, J. & Verkhusha, V.V. (2010) Bright monomeric photoactivatable red fluorescent protein for two-color super-resolution sptPALM of live cells. J. Am. Chem. Soc. 132, 6481-6491.
30. Tsutsui, H., Karasawa, S., Shimizu, H., Nukina, N. & Miyawaki, A. (2005) Semi-rational engineering of a coral fluorescent protein into an efficient highlighter. EMBO Rep. 6, 233-238.
31. Verkhusha, V.V. & Sorkin, A. (2005) Conversion of the monomeric red fluorescent protein into a photoactivatable probe. Chem. Biol. 12, 279-285.
32. Wiedenmann, J., Ivanchenko, S., Oswald, F., et al. (2004) EosFP, a fluorescent marker protein with UV-inducible green-to-red fluorescence conversion. Proc. Natl. Acad. Sci. USA 101, 15905-15910.
33. Yokoe, H. & Meyer, T. (1996) Spatial dynamics of GFP-tagged proteins investigated by local fluorescence enhancement. Nat. Biotechnol. 14, 1252-1256.