Fungal colonization in soils with different management histories: Modeling growth in three-dimensional pore volumes

Ecological Applications

Volumn 21, Issue 4, 2011, Pages 1202-1210

  Kravchenko, Alexandra ^a   Falconer, Ruth E ^b   Grinev, Dmitri ^b,c   Otten, Wilfred ^b  

^a MICHIGAN STATE UNIVERSITY   (United States)

^b UNIVERSITY OF ABERTAY DUNDEE   (United Kingdom)

^c UNIVERSITY OF SOUTHAMPTON   (United Kingdom)

Author keywords

Conventional tillage; Fungal growth model; Fungal invasions; LTER site, southeastern Michigan, USA; Native succession vegetation; No till agriculture; Three dimensional pore space; X ray microtomography

Indexed keywords

AGRICULTURAL PRACTICE; BIOLOGICAL INVASION; COLONIZATION; DIGITAL IMAGE; FRAGMENTATION; FUNGUS; GEOMETRY; GROWTH RATE; MAGNITUDE; NUMERICAL MODEL; POROSITY; SOIL MANAGEMENT; SOIL MICROORGANISM; SOIL STRUCTURE; THREE-DIMENSIONAL MODELING; TOMOGRAPHY; VOLUME; ZERO TILLAGE;

ARTICLE; BIOLOGICAL MODEL; COMPUTER SIMULATION; FUNGUS; GROWTH, DEVELOPMENT AND AGING; MICROBIOLOGY; MYCELIUM; PHYSIOLOGY;

COMPUTER SIMULATION; FUNGI; MODELS, BIOLOGICAL; MYCELIUM; SOIL MICROBIOLOGY;

MICHIGAN; UNITED STATES;

FUNGI;

EID: 79958807417     PISSN: 10510761     EISSN: None     Source Type: Journal    
DOI: 10.1890/10-0525.1     Document Type: Article

References (28)

1. Baveye, P. C., et al. 2010. Observer-dependent variability of the thresholding step in the quantitative analysis of soil images and X-ray microtomography data. Geoderma 157:51-63.
2. Bedini, S., E. Pellegrino, L. Avio, S. Pellegrini, P. Bazzoffi, E. Argese, and M. Giovannetti. 2009. Changes in soil aggregation and glomalin-related soil protein content as affected by the arbuscular mycorrhizal fungal species Glomus mosseae and Glomus intraradices. Soil Biology and Biochemistry 41:1491-1496.
3. Brye, K. R., and A. L. Pirani. 2005. Native soil quality and the effects of tillage in the grand prairie region of eastern Arkansas. American Midland Naturalist 154:28-41. (Pubitemid 41026454)
4. Chun, H. C., D. Gimenez, and S. W. Yoon. 2008. Morphology, lacunarity and entropy of intra-aggregate pores: aggregate size and soil management effects. Geoderma 146:83-93.
5. Cook, A. R., W. Otten, G. Marion, G. J. Gibson, and C. A. Gilligan. 2007. Estimation of multiple transmission rates for epidemics in heterogeneous populations. PNAS 104(51):20392-20397.
6. Deurer, M., D. Grinev, I. M. Young, B. E. Clothier, and K. Muller. 2009. The impact of soil carbon management on soil macropore structure: a comparison of two apple orchard systems in New Zealand. European Journal of Soil Science 60:945-955.
7. Erb, K. H. 2004. Land-use related changes in aboveground carbon stocks of Austria's terrestrial ecosystems. Ecosystems 7:563-572.
8. Falconer, R. E., J. L. Bown, N. A. White, and J. W. Crawford. 2005. Biomass recycling and the origin of phenotype in fungal mycelia. Proceedings of the Royal Society B 272(1573):1727-1734. (Pubitemid 41414682)
9. Falconer, R. E., J. L. Bown, N. A. White, and J. W. Crawford. 2007. Biomass recycling: a key to efficient foraging. Oikos 116:1558-1568. (Pubitemid 47283761)
10. Falconer, R. E., J. L. Bown, N. A. White, and J. W. Crawford. 2008. Modelling interactions in fungi. Journal of the Royal Society Interface 5(23):603-615. (Pubitemid 351589744)
11. 2 evolution, water content, temperature, and bulk density. Applied Soil Ecology 2:95-109.
12. Gantzer, C. J., and S. H. Anderson. 2002. Computed tomographic measurement of macroporosity in chisel-disk and no-tillage seedbeds. Soil and Tillage Research 64:101-111. (Pubitemid 34108567)
13. Gilligan, C. A. 1990. Comparison of disease progress curves. New Phytologist 115:223-242.
14. Harris, K., I. M. Young, C. A. Gilligan, W. Otten, and K. Ritz. 2003. Effect of bulk density on the spatial organisation of the fungus Rhizoctonia solani in soil. FEMS Microbial Ecology 44:45-56. (Pubitemid 37034599)
15. Helgason, T., J. Daniell, R. Husband, A. H. Fitter, and J. P. W. Young. 1998. Ploughing up the wood-wide web? Nature 394:431.
16. Otten, W., and C. A. Gilligan. 2006. Soil structure and soilborne diseases: using epidemiological concepts to scale from fungal spread to plant epidemics. European Journal of Soil Science 57:26-37.
17. Otten, W., D. Hall, K. Harris, K. Ritz, I. M. Young, and C. A. Gilligan. 2001. Soil physics, fungal epidemiology and the spread of Rhizoctonia solani. New Phytologist 151:459-468. (Pubitemid 32722369)
18. Otten, W., K. Harris, I. M. Young, K. Ritz, and C. A. Gilligan. 2004. Preferential spread of the pathogenic fungus Rhizoctonia solani through structured soil. Soil Biology and Biochemistry 36:203-210. (Pubitemid 38192740)
19. Pachepsky, E., J. W. Crawford, J. Bown, and G. Squire. 2001. Towards a general theory of biodiversity. Nature 410:923-926. (Pubitemid 32335835)
20. Pachepsky, Y. A., V. Yakovchenko, M. C. Rabenhorst, C. Pooley, and L. J. Sikora. 1996. Fractal parameters of pore surfaces as derived from micromorphological data: effect of long-term management practices. Geoderma 74:305-319.
21. Paulitz, T. C. 2006. Low input no-till cereal production in the Pacific Northwest of the U. S.: the challenges of root diseases. European Journal of Plant Pathology 115:271-281. (Pubitemid 44000059)
22. Paulitz, T. C., R. W. Smiley, and R. J. Cook. 2002. Insights into the prevalence and management of soilborne cereal pathogens under direct seeding in the Pacific Northwest, U. S. A. Canadian Journal of Plant Pathology 24:416-428. (Pubitemid 36144667)
23. Rachman, A., S. H. Anderson, and C. J. Gantzer. 2005. Computed-tomographic measurement of soil macroporosity parameters as affected by stiff-stemmed grass hedges. Soil Science Society of America Journal 69:1609-1616. (Pubitemid 41279546)
24. SAS Institute. 2008. SAS, version 9.1. SAS Institute, Cary, North Carolina, USA.
25. Schroeder, K. L., and T. C. Paulitz. 2008. Effect of inoculum density and soil tillage on the development and severity of Rhizoctonia root rot. Phytopathology 98:304-314. (Pubitemid 351398676)
26. Udawatta, R. P., S. H. Anderson, C. J. Gantzer, and H. E. Garrett. 2006. Agroforestry and grass buffer influence on macropore characteristics: a computed tomography analysis. Soil Science Society of America Journal 70:1763-1773. (Pubitemid 44373302)
27. Udawatta, R. P., S. H. Anderson, C. J. Gantzer, and H. E. Garrett. 2008. Influence of prairie restoration on CT-measured soil pore characteristics. Journal of Environmental Quality 37:219-228.
28. Young, I. M., J. W. Crawford, N. Nunan, W. Otten, and A. Spiers. 2008. Microbial distribution in soils: physics and scaling. Advances in Agronomy 100:81-121.