Soil structure and soil-borne diseases: Using epidemiological concepts to scale from fungal spread to plant epidemics

European Journal of Soil Science

Volumn 57, Issue 1, 2006, Pages 26-37

  Otten, W ^a   Gilligan, C A ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DISEASE; EPIDEMIOLOGY; FUNGUS; SOIL SCIENCE; SOIL STRUCTURE;

FUNGI; HYPHOMYCETES; THANATEPHORUS CUCUMERIS;

EID: 33645085885     PISSN: 13510754     EISSN: 13652389     Source Type: Journal    
DOI: 10.1111/j.1365-2389.2006.00766.x     Document Type: Conference Paper

References (43)

1. Alabouvette C. Höper H. Lemanceau P. Steinberg C. 1996 Soil suppressiveness to disease induced by soilborne plant pathogens. In: Soil Biochemistry (ed. Bollag J.M., pp. 371 413 Marcel Dekker New York
2. Alexander M. 1977. Introduction to Microbiology 2nd edn John Wiley & Sons New York
3. Anderson R.M. May R.M. 1991. Infectious Diseases of Humans: Dynamics and Control Oxford University Press Oxford
4. Bailey D.J. Gilligan C.A. 1997 Biological control of pathozone behaviour and disease dynamics of Rhizoctonia solani by Trichoderma viride New Phytologist 136 359 367
5. Bailey D.J. Otten W. Gilligan C.A. 2000 Saprotrophic invasion by the soil-borne fungal plant pathogen Rhizoctonia solani and percolation thresholds New Phytologist 146 535 544
6. Boddy L. 1999 Saprotrophic cord-forming fungi: meeting the challenge of heterogeneous environments Mycologia 91 13 32
7. Boswell G.P. Jacobs H. Davidson F.A. Gadd G.M. Ritz K. 2003 Growth and function of fungal mycelia in heterogeneous environments Bulletin of Mathematical Biology 65 447 477
8. Colbach N. Duby C. Cavelier A. Meynard J.M. 1997 Influence of cropping systems on foot and root diseases of winter wheat: fitting of a statistical model European Journal of Agronomy 6 61 77
9. Colbach N. Maurin N. Huet P. 1996 Influence of cropping system on foot rot of winter wheat in France Crop Protection 15 295 305
10. De Willigen P. van Noordwijk M. 1987 Roots, plant production and nutrient use efficiency PhD thesis Agricultural University, Wageningen
11. Fritz V.A. Allmaras R.R. Pfleger F.L. Davis D.W. 1995 Oat residue and soil compaction influences on common root-rot (Aphanomyces euteiches) of peas in a fine-textured soil Plant and Soil 171 235 244
12. Gibson G.J. Gilligan C.A. Kleczkowski A. 1999 Predicting variability in biological control of a plant-pathogen system using stochastic models Proceedings of the Royal Society of London Series B-Biological Sciences 266 1743 1753
13. Gilligan C.A. 1990 Mathematical models of infection. In: The Rhizosphere (ed. Lynch J.M., pp. 207 232 John Wiley & Sons Chichester
14. Gilligan C.A. 2002 An epidemiological framework for disease management Advances in Botanical Research 38 1 64
15. Gilligan C.A. Bailey D.J. 1997 Components of pathozone behaviour New Phytologist 136 342 358
16. Glenn O.F. Hainsworth J.M. Parker C.A. Sivasithamparam K. 1987 Influence of matric potential and soil compaction on growth of the take-all fungus through soil Transactions of the British Mycological Society 88 83 89
17. Golldack J. Augustin C. Lentzsch P. Werner A. 2004 Pathozones of genetic subtypes of Gaeumannomyces graminis in cereals Soil Biology and Biochemistry 36 145 154
18. Gregory P.J. Hinsinger P. 1999 New approaches to studying chemical and physical changes in the rhizosphere: an overview Plant and Soil 211 1 9
19. Harris K. Young I.M. Gilligan C.A. Otten W. Ritz K. 2003 Effect of bulk density on the spatial organisation of the fungus Rhizoctonia solani in soil FEMS Microbiology Ecology 44 45 56
20. Heil M. 2001 The ecological concept of costs of induced systemic resistance (ISR) European Journal of Plant Pathology 107 137 146
21. Jeger M.J. 2000 Theory and plant epidemiology Plant Pathology 49 651 658
22. Keijer J. 1996 Plant-pathogen interactions of Rhizoctonia spp. In: Rhizoctonia Species: Taxonomy, Molecular Biology, Ecology, Pathology and Disease Control (ed. Dijst G., pp. 149 162 Kluwer Academic Dordrecht
23. Kleczkowski A. Gilligan C.A. Bailey D.J. 1997 Scaling and spatial dynamics in plant pathogen systems: from individuals to populations Proceedings of the Royal Society of London Series B 264 979 984
24. Li B.L. Loehle C. Malon D. 1996 Microbial transport through heterogeneous porous media: random walk, fractal, and percolation approaches Ecological Modelling 85 285 302
25. Meyers L.A. Newman M.E.J. Martin M. Schrag S. 2003 Applying network theory to epidemics: control measures for Mycoplasma pneumoniae outbreaks Emerging Infectious Diseases 9 204 210
26. Newman M.E.J. 2002 Spread of epidemic disease on networks Physical Review E 66 No 016128
27. Otten W. Bailey D.J. Gilligan C.A. 2004b Empirical evidence of spatial thresholds to control invasion of fungal parasites and saprotrophs New Phytologist 163 125 132
28. Otten W. Filipe J.A.N. Gilligan C.A. 2004a An empirical method to estimate the effect of soil on the rate for disease transmission of damping-off disease New Phytologist 162 231 238
29. Otten W. Gilligan C.A. 1998 Effect of physical conditions on the spatial and temporal dynamics of the soil-borne fungal pathogen Rhizoctonia solani New Phytologist 138 629 637
30. Otten W. Gilligan C.A. Watts C.W. Dexter A.R. Hall D. 1999 Continuity of air-filled pores and invasion thresholds for a soil-borne fungal pathogen Rhizoctonia SolaniSoil Biology and Biochemistry 31 1803 1810
31. Otten W. Hall D. Harris K. Ritz K. Young I.M. Gilligan C.A. 2001 Soil physics, fungal epidemiology and the spread of Rhizoctonia solani New Phytologist 151 459 468
32. Otten W. Harris K. Young I.M. Ritz K. Gilligan C.A. 2004c Preferential spread of the pathogenic fungus Rhizoctonia solani through structured soil Soil Biology and Biochemistry 36 203 210
33. Ritz K. 1995 Growth responses of some fungi to spatially heterogeneous nutrients FEMS Microbiology and Ecology 16 269 279
34. Schmelzer E. 2002 Cell polarization, a crucial process in fungal defence Trends in Plant Science 7 411 415
35. Sturz A.V. Carter M.R. 1995 Conservation tillage systems, fungal complexes and disease development in soybean and barley rhizospheres in Prince Edward Island Soil and Tillage Research 34 225 238
36. Sturz A.V. Carter M.R. Johnston H.W. 1997 A review of plant disease, pathogen interactions and microbial antagonism under conservation tillage in temperate humid agriculture Soil and Tillage Research 41 169 189
37. Sumner D.R. Doupnik B. Boosalis M.G. 1981 Effects of reduced tillage and multiple cropping on plant diseases Annual Review of Phytopathology 19 167 187
38. Tardieu F. 1988 Analysis of the spatial variability of maize root density. 2. Distances between roots Plant and Soil 107 267 272
39. Tippkotter R. Ritz K. 1996 Evaluation of polyester, epoxy and acrylic resins for suitability in preparation of soil thin sections for in situ biological studies Geoderma 69 31 57
40. Toyota K. Ritz K. Young I.M. 1996 Microbiological factors affecting the colonisation of soil aggregates by Fusarium oxysporum f.sp. Raphani Soil Biology and Biochemistry 28 1513 1521
41. Weller D.M. 1988 Biological-control of soilborne plant-pathogens in the rhizosphere with bacteria Annual Review of Phytopathology 26 379 407
42. Young I.M. 1998 Biophysical interactions at the root-soil interface: a review Journal of Agricultural Science 130 1 7
43. Young I.M. Ritz K. 2000 Tillage, habitat space and function of soil microbes Soil and Tillage Research 53 201 213