-
1
-
-
34248188767
-
Controlling crystallization and its absence: Proteins, colloids and patchy models
-
J. P. K. Doye, A. A. Louis, I. C. Lin, L. R. Allen, E. G. Noya, A. W. Wilber, H. C. Kok, and R. Lyus, Controlling crystallization and its absence: proteins, colloids and patchy models, Phys. Chem. Chem. Phys. 9(2007), pp. 2197-2205.
-
(2007)
Phys. Chem. Chem. Phys.
, vol.9
, pp. 2197-2205
-
-
Doye, J.P.K.1
Louis, A.A.2
Lin, I.C.3
Allen, L.R.4
Noya, E.G.5
Wilber, A.W.6
Kok, H.C.7
Lyus, R.8
-
2
-
-
68649091016
-
Self-assembly-induced protein crystallization
-
H. Liu, S. K. Kumar, and J. F. Douglas, Self-assembly-induced protein crystallization, Phys. Rev. Lett. 103 (1) (2009), p. 18101.
-
(2009)
Phys. Rev. Lett.
, vol.103
, Issue.1
, pp. 18101
-
-
Liu, H.1
Kumar, S.K.2
Douglas, J.F.3
-
3
-
-
0030806177
-
Enhancement of protein crystal nucleation by critical density fluctuations
-
P. R. ten Wolde and D. Frenkel, Enhancement of protein crystal nucleation by critical density fluctuations, Science 277 (5334) (1997), p. 1975.
-
(1997)
Science
, vol.277
, Issue.5334
, pp. 1975
-
-
Ten Wolde, P.R.1
Frenkel, D.2
-
4
-
-
33745787907
-
Dynamic pathways for viral capsid assembly
-
DOI 10.1529/biophysj.105.076851
-
M. F. Hagan and D. Chandler, Dynamic pathways for viral capsid assembly, Biophys. J. 91 (1) (2006), pp. 42-54. (Pubitemid 44018054)
-
(2006)
Biophysical Journal
, vol.91
, Issue.1
, pp. 42-54
-
-
Hagan, M.F.1
Chandler, D.2
-
5
-
-
33847712647
-
Deciphering the kinetic mechanism of spontaneous self-assembly of icosahedral capsids
-
DOI 10.1021/nl062449h
-
H. D. Nguyen, V. S. Reddy, and C. L. Brooks, III, Deciphering the kinetic mechanism of spontaneous self-assembly of icosahedral capsids, Nano. Lett. 7 (2) (2007), pp. 338-344. (Pubitemid 46383594)
-
(2007)
Nano Letters
, vol.7
, Issue.2
, pp. 338-344
-
-
Nguyen, H.D.1
Reddy, V.S.2
Brooks III, C.L.3
-
6
-
-
29344476177
-
Self-assembly of patchy particles into diamond structures through molecular mimicry
-
DOI 10.1021/la0513611
-
Z. Zhang, A. S. Keys, T. Chen, and S. C. Glotzer, Self-assembly of patchy particles into diamond structures through molecular mimicry, Langmuir 21 (25) (2005), pp. 11547-11551. (Pubitemid 43011484)
-
(2005)
Langmuir
, vol.21
, Issue.25
, pp. 11547-11551
-
-
Zhang, Z.1
Keys, A.S.2
Chen, T.3
Glotzer, S.C.4
-
7
-
-
70849088990
-
Phase diagram of janus particles
-
F. Sciortino, A. Giacometti, and G. Pastore, Phase diagram of janus particles, Phys. Rev. Lett. 103 (23) (2009), p. 237801.
-
(2009)
Phys. Rev. Lett.
, vol.103
, Issue.23
, pp. 237801
-
-
Sciortino, F.1
Giacometti, A.2
Pastore, G.3
-
10
-
-
0000464832
-
Metropolis Monte Carlo method as a numerical technique to solve the Fokker-Planck equation
-
K. Kikuchi, M. Yoshida, T. Maekawa, and H. Watanabe, Metropolis Monte Carlo method as a numerical technique to solve the Fokker-Planck equation, Chem. Phys. Lett. 185 (3-4) (1991), pp. 335-338.
-
(1991)
Chem. Phys. Lett.
, vol.185
, Issue.3-4
, pp. 335-338
-
-
Kikuchi, K.1
Yoshida, M.2
Maekawa, T.3
Watanabe, H.4
-
11
-
-
34247894045
-
Use of the Metropolis algorithm to simulate the dynamics of protein chains
-
DOI 10.1016/j.physa.2007.02.044, PII S0378437107001926
-
G. Tiana, L. Sutto, and R. A. Broglia, Use of the Metropolis algorithm to simulate the dynamics of protein chains, Physica A: Stat. Mech. Appl. 380(2007), pp. 241-249. (Pubitemid 46694221)
-
(2007)
Physica A: Statistical Mechanics and its Applications
, vol.380
, Issue.1-2
, pp. 241-249
-
-
Tiana, G.1
Sutto, L.2
Broglia, R.A.3
-
12
-
-
77955776543
-
Control of pathways and yields of protein crystallization through the interplay of nonspecific and specific attractions
-
S. Whitelam, Control of pathways and yields of protein crystallization through the interplay of nonspecific and specific attractions, Phys. Rev. Lett. 105 (8) (2010), p. 088102.
-
(2010)
Phys. Rev. Lett.
, vol.105
, Issue.8
, pp. 088102
-
-
Whitelam, S.1
-
13
-
-
77953018606
-
Dynamic Monte Carlo versus Brownian dynamics: A comparison for self-diffusion and crystallization in colloidal fluids
-
E. Sanz and D. Marenduzzo, Dynamic Monte Carlo versus Brownian dynamics: A comparison for self-diffusion and crystallization in colloidal fluids, J. Chem. Phys. 132(2010), p. 194102.
-
(2010)
J. Chem. Phys.
, vol.132
, pp. 194102
-
-
Sanz, E.1
Marenduzzo, D.2
-
14
-
-
77953845872
-
Computational analysis of binary segregation during colloidal crystallization with DNA-mediated interactions
-
R. T. Scarlett, J. C. Crocker, and T. Sinno, Computational analysis of binary segregation during colloidal crystallization with DNA-mediated interactions, J. Chem. Phys. 132(2010), p. 234705.
-
(2010)
J. Chem. Phys.
, vol.132
, pp. 234705
-
-
Scarlett, R.T.1
Crocker, J.C.2
Sinno, T.3
-
15
-
-
34247494580
-
The Monte Carlo dynamics of a binary Lennard-Jones glass-forming mixture
-
L. Berthier and W. Kob, The Monte Carlo dynamics of a binary Lennard-Jones glass-forming mixture, J. Phys. Cond. Mat. 19 (20) (2007), p. 205130.
-
(2007)
J. Phys. Cond. Mat.
, vol.19
, Issue.20
, pp. 205130
-
-
Berthier, L.1
Kob, W.2
-
16
-
-
34547182789
-
Revisiting the slow dynamics of a silica melt using Monte Carlo simulations
-
L. Berthier, Revisiting the slow dynamics of a silica melt using Monte Carlo simulations, Phys. Rev. E 76 (1) (2007), p. 11507.
-
(2007)
Phys. Rev. E
, vol.76
, Issue.1
, pp. 11507
-
-
Berthier, L.1
-
17
-
-
0011736225
-
Monte Carlo as Brownian dynamics
-
D. M. Heyes and A. C. Brańka, Monte Carlo as Brownian dynamics, Mol. Phys. 94 (3) (1998), pp. 447-454. (Pubitemid 128476653)
-
(1998)
Molecular Physics
, vol.94
, Issue.3
, pp. 447-454
-
-
Heyes, D.M.1
Branka, A.C.2
-
18
-
-
0001297162
-
Brownian dynamics as smart Monte Carlo simulation
-
P. J. Rossky, J. D. Doll, and H. L. Friedman, Brownian dynamics as smart Monte Carlo simulation, J. Chem. Phys. 69(1978), p. 4628.
-
(1978)
J. Chem. Phys.
, vol.69
, pp. 4628
-
-
Rossky, P.J.1
Doll, J.D.2
Friedman, H.L.3
-
19
-
-
0001293306
-
Phase behavior of the restricted primitive model and square-well fluids from Monte Carlo simulations in the grand canonical ensemble
-
G. Orkoulas and A. Z. Panagiotopoulos, Phase behavior of the restricted primitive model and square-well fluids from Monte Carlo simulations in the grand canonical ensemble, J. Chem. Phys. 110(1999), p. 1581.
-
(1999)
J. Chem. Phys.
, vol.110
, pp. 1581
-
-
Orkoulas, G.1
Panagiotopoulos, A.Z.2
-
20
-
-
1442306896
-
Rejection-free geometric cluster algorithm for complex fluids
-
J. Liu and E. Luijten, Rejection-free geometric cluster algorithm for complex fluids, Phys. Rev. Lett. 92 (3) (2004), p. 35504.
-
(2004)
Phys. Rev. Lett.
, vol.92
, Issue.3
, pp. 35504
-
-
Liu, J.1
Luijten, E.2
-
21
-
-
33747349191
-
Nonuniversal critical dynamics in Monte Carlo simulations
-
R. H. Swendsen and J. S. Wang, Nonuniversal critical dynamics in Monte Carlo simulations, Phys. Rev. Lett. 58 (2) (1987), pp. 86-88.
-
(1987)
Phys. Rev. Lett.
, vol.58
, Issue.2
, pp. 86-88
-
-
Swendsen, R.H.1
Wang, J.S.2
-
22
-
-
5544308012
-
Electrostatic analogy for surfactant assemblies
-
D. Wu, D. Chandler, and B. Smit, Electrostatic analogy for surfactant assemblies, J. Phys. Chem. 96 (10) (1992), pp. 4077-4083.
-
(1992)
J. Phys. Chem.
, vol.96
, Issue.10
, pp. 4077-4083
-
-
Wu, D.1
Chandler, D.2
Smit, B.3
-
23
-
-
5244336186
-
Collective Monte Carlo updating for spin systems
-
U. Wolff, Collective Monte Carlo updating for spin systems, Phys. Rev. Lett. 62 (4) (1989), pp. 361-364.
-
(1989)
Phys. Rev. Lett.
, vol.62
, Issue.4
, pp. 361-364
-
-
Wolff, U.1
-
24
-
-
38449086990
-
Avoiding unphysical kinetic traps in Monte Carlo simulations of strongly attractive particles
-
S. Whitelam and P. L. Geissler, Avoiding unphysical kinetic traps in Monte Carlo simulations of strongly attractive particles, J. Chem. Phys. 127(2007), p. 154101.
-
(2007)
J. Chem. Phys.
, vol.127
, pp. 154101
-
-
Whitelam, S.1
Geissler, P.L.2
-
25
-
-
44449101599
-
Self-assembly of sparsely distributed molecules: An efficient cluster algorithm
-
A. Bhattacharyay and A. Troisi, Self-assembly of sparsely distributed molecules: An efficient cluster algorithm, Chem. Phys. Lett. 458 (1-3) (2008), pp. 210-213.
-
(2008)
Chem. Phys. Lett.
, vol.458
, Issue.1-3
, pp. 210-213
-
-
Bhattacharyay, A.1
Troisi, A.2
-
26
-
-
11144230021
-
Speed-up of Monte Carlo simulations by sampling of rejected states
-
D. Frenkel, Speed-up of Monte Carlo simulations by sampling of rejected states, Proc. Natl Acad. Sci. 101 (51) (2004), p. 17571.
-
(2004)
Proc. Natl. Acad. Sci.
, vol.101
, Issue.51
, pp. 17571
-
-
Frenkel, D.1
-
27
-
-
34548165558
-
Fluctuation-dissipation ratios in the dynamics of self-assembly
-
R. L. Jack, M. F. Hagan, and D. Chandler, Fluctuation-dissipation ratios in the dynamics of self-assembly, Phys. Rev. E 76 (2) (2007), p. 21119.
-
(2007)
Phys. Rev. E
, vol.76
, Issue.2
, pp. 21119
-
-
Jack, R.L.1
Hagan, M.F.2
Chandler, D.3
-
28
-
-
70349270844
-
A comparison of new methods for generating energy-minimizing configurations of patchy particles
-
E. Jankowski and S. C. Glotzer, A comparison of new methods for generating energy-minimizing configurations of patchy particles, J. Chem. Phys. 131(2009), p. 104104.
-
(2009)
J. Chem. Phys.
, vol.131
, pp. 104104
-
-
Jankowski, E.1
Glotzer, S.C.2
-
29
-
-
76749131209
-
Sequence dependent selfassembly of β-peptides: Insights from a coarse-grained model
-
J. Mondal, B. J. Sung, and A. Yethiraj, Sequence dependent selfassembly of β-peptides: Insights from a coarse-grained model, J. Chem. Phys. 132(2010), p. 065103.
-
(2010)
J. Chem. Phys.
, vol.132
, pp. 065103
-
-
Mondal, J.1
Sung, B.J.2
Yethiraj, A.3
-
30
-
-
77949470958
-
Modeling the self-assembly of benzenedicarboxylic acids using Monte Carlo and molecular dynamics simulations
-
N. Martsinovich and A. Troisi, Modeling the self-assembly of benzenedicarboxylic acids using Monte Carlo and molecular dynamics simulations, J. Phys. Chem. C 114 (10) (2010), pp. 4376-4388.
-
(2010)
J. Phys. Chem. C
, vol.114
, Issue.10
, pp. 4376-4388
-
-
Martsinovich, N.1
Troisi, A.2
-
31
-
-
62249221278
-
The role of collective motion in examples of coarsening and self-assembly
-
S. Whitelam, E. H. Feng, M. F. Hagan, and P. L. Geissler, The role of collective motion in examples of coarsening and self-assembly, Soft Matter 5 (6) (2009a), pp. 1251-1262.
-
(2009)
Soft Matter.
, vol.5
, Issue.6
, pp. 1251-1262
-
-
Whitelam, S.1
Feng, E.H.2
Hagan, M.F.3
Geissler, P.L.4
-
32
-
-
61649086226
-
The impact of conformational fluctuations on self-assembly: Cooperative aggregation of archaeal chaperonin proteins
-
S. Whitelam, C. Rogers, A. Pasqua, C. Paavola, J. Trent, and P. L. Geissler, The impact of conformational fluctuations on self-assembly: Cooperative aggregation of archaeal chaperonin proteins, Nano. Lett. 9 (1) (2009b), pp. 292-297.
-
(2009)
Nano. Lett.
, vol.9
, Issue.1
, pp. 292-297
-
-
Whitelam, S.1
Rogers, C.2
Pasqua, A.3
Paavola, C.4
Trent, J.5
Geissler, P.L.6
-
33
-
-
77951569390
-
DNA nanotweezers studied with a coarse-grained model of DNA
-
T. E. Ouldridge, A. A. Louis, and J. P. K. Doye, DNA nanotweezers studied with a coarse-grained model of DNA, Phys. Rev. Lett. 104 (17) (2010), p. 178101.
-
(2010)
Phys. Rev. Lett.
, vol.104
, Issue.17
, pp. 178101
-
-
Ouldridge, T.E.1
Louis, A.A.2
Doye, J.P.K.3
-
34
-
-
77149171458
-
Self-assembly of amphiphilic peanutshaped nanoparticles
-
S. Whitelam and S. A. F. Bon, Self-assembly of amphiphilic peanutshaped nanoparticles, J. Chem. Phys. 132(2010), p. 074901.
-
(2010)
J. Chem. Phys.
, vol.132
, pp. 074901
-
-
Whitelam, S.1
Bon, S.A.F.2
-
35
-
-
77956069789
-
Controlled formation of nanostructures with desired geometries. 1. Robust static structures
-
E. O. P. Solis, P. I. Barton, and G. Stephanopoulos, Controlled formation of nanostructures with desired geometries. 1. Robust static structures, Ind. Eng. Chem. Res. 49 (2010a), p. 1858.
-
(2010)
Ind. Eng. Chem. Res.
, vol.49
, pp. 1858
-
-
Solis, E.O.P.1
Barton, P.I.2
Stephanopoulos, G.3
-
36
-
-
77956069789
-
Controlled formation of nanostructures with desired geometries. 2. Robust dynamic paths
-
E. O. P. Solis, P. I. Barton, and G. Stephanopoulos, Controlled formation of nanostructures with desired geometries. 2. Robust dynamic paths, Indus. Eng. Chem. Res. 49 (2010b), p. 669.
-
(2010)
Indus. Eng. Chem. Res.
, vol.49
, pp. 669
-
-
Solis, E.O.P.1
Barton, P.I.2
Stephanopoulos, G.3
-
37
-
-
63149089900
-
Selfassembly and evolution of homomeric protein complexes
-
G. Villar, A. W. Wilber, A. J. Williamson, P. Thiara, J. P. K. Doye, A. A. Louis, M. N. Jochum, A. C. F. Lewis, and E. D. Levy, Selfassembly and evolution of homomeric protein complexes, Phys. Rev. Lett. 102 (11) (2009), p. 118106.
-
(2009)
Phys. Rev. Lett.
, vol.102
, Issue.11
, pp. 118106
-
-
Villar, G.1
Wilber, A.W.2
Williamson, A.J.3
Thiara, P.4
Doye, J.P.K.5
Louis, A.A.6
Jochum, M.N.7
Lewis, A.C.F.8
Levy, E.D.9
-
38
-
-
77955866144
-
Association of limited valence patchy particles in two dimensions
-
J. Russo, P. Tartaglia, and F. Sciortino, Association of limited valence patchy particles in two dimensions, Soft Matter 6 (17) (2010), pp. 4229-4236.
-
(2010)
Soft Matter.
, vol.6
, Issue.17
, pp. 4229-4236
-
-
Russo, J.1
Tartaglia, P.2
Sciortino, F.3
-
40
-
-
69449096819
-
Methods for Monte Carlo simulations of biomacromolecules
-
A. Vitalis and R. V. Pappu, Methods for Monte Carlo simulations of biomacromolecules, Ann. Rep. Comput. Chem. 5(2009), pp. 49-76.
-
(2009)
Ann. Rep. Comput. Chem.
, vol.5
, pp. 49-76
-
-
Vitalis, A.1
Pappu, R.V.2
|