-
1
-
-
0035805255
-
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
-
Ideker T, Thorsson V, Ranish JA, Christmas R, Buhler J, et al. (2001) Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science (New York, NY 292 (5518): 929-934.
-
(2001)
Science (New York, NY
, vol.292
, Issue.5518
, pp. 929-934
-
-
Ideker, T.1
Thorsson, V.2
Ranish, J.A.3
Christmas, R.4
Buhler, J.5
-
2
-
-
0037168597
-
An ensemble method for identifying regulatory circuits with special reference to the qa gene cluster of Neurospora crassa
-
Battogtokh D, Asch DK, Case ME, Arnold J, Schuttler HB, (2002) An ensemble method for identifying regulatory circuits with special reference to the qa gene cluster of Neurospora crassa. Proceedings of the National Academy of Sciences of the United States of America 99 (26): 16904-16909.
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.26
, pp. 16904-16909
-
-
Battogtokh, D.1
Asch, D.K.2
Case, M.E.3
Arnold, J.4
Schuttler, H.B.5
-
3
-
-
2342648924
-
Integrating high-throughput and computational data elucidates bacterial networks
-
Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO, (2004) Integrating high-throughput and computational data elucidates bacterial networks. Nature 429 (6987): 92-96.
-
(2004)
Nature
, vol.429
, Issue.6987
, pp. 92-96
-
-
Covert, M.W.1
Knight, E.M.2
Reed, J.L.3
Herrgard, M.J.4
Palsson, B.O.5
-
4
-
-
1442354192
-
Multistability in the lactose utilization network of Escherichia coli
-
Ozbudak EM, Thattai M, Lim HN, Shraiman BI, van Oudenaarden A, (2004) Multistability in the lactose utilization network of Escherichia coli. Nature 427 (6976): 737-740.
-
(2004)
Nature
, vol.427
, Issue.6976
, pp. 737-740
-
-
Ozbudak, E.M.1
Thattai, M.2
Lim, H.N.3
Shraiman, B.I.4
van Oudenaarden, A.5
-
5
-
-
51849149741
-
Genome-wide expression analysis of genetic networks in Neurospora crassa
-
Logan DA, Koch AL, Dong W, Griffith J, Nilsen R, et al. (2007) Genome-wide expression analysis of genetic networks in Neurospora crassa. Bioinformation 1 (10): 390-395.
-
(2007)
Bioinformation
, vol.1
, Issue.10
, pp. 390-395
-
-
Logan, D.A.1
Koch, A.L.2
Dong, W.3
Griffith, J.4
Nilsen, R.5
-
6
-
-
14544294928
-
Flux analysis uncovers key role of functional redundancy in formaldehyde metabolism
-
Marx C, Van Dien SJ, Lidstrom ME, (2005) Flux analysis uncovers key role of functional redundancy in formaldehyde metabolism. PLoS Biology 3: 244-253.
-
(2005)
PLoS Biology
, vol.3
, pp. 244-253
-
-
Marx, C.1
van Dien, S.J.2
Lidstrom, M.E.3
-
7
-
-
3142734333
-
Dynamic control of positional information in the early Drosophila embryo
-
Jaeger J, Surkova S, Blagov M, Janssens H, Kosman D, et al. (2004) Dynamic control of positional information in the early Drosophila embryo. Nature 430 (6997): 368-371.
-
(2004)
Nature
, vol.430
, Issue.6997
, pp. 368-371
-
-
Jaeger, J.1
Surkova, S.2
Blagov, M.3
Janssens, H.4
Kosman, D.5
-
8
-
-
4344685444
-
Nutritional homeostasis in batch and steady-state culture of yeast
-
Saldanha AJ, Brauer MJ, Botstein D, (2004) Nutritional homeostasis in batch and steady-state culture of yeast. Molecular biology of the cell 15 (9): 4089-4104.
-
(2004)
Molecular Biology of the Cell
, vol.15
, Issue.9
, pp. 4089-4104
-
-
Saldanha, A.J.1
Brauer, M.J.2
Botstein, D.3
-
9
-
-
0035149551
-
Remodeling of yeast genome expression in response to environmental changes
-
Causton HC, Ren B, Koh SS, Harbison CT, Kanin E, et al. (2001) Remodeling of yeast genome expression in response to environmental changes. Molecular biology of the cell 12 (2): 323-337.
-
(2001)
Molecular Biology of the Cell
, vol.12
, Issue.2
, pp. 323-337
-
-
Causton, H.C.1
Ren, B.2
Koh, S.S.3
Harbison, C.T.4
Kanin, E.5
-
10
-
-
0037288767
-
Systems biology: integrating technology, biology, and computation
-
Hood L, (2003) Systems biology: integrating technology, biology, and computation. Mech Ageing Dev 124 (1): 9-16.
-
(2003)
Mech Ageing Dev
, vol.124
, Issue.1
, pp. 9-16
-
-
Hood, L.1
-
11
-
-
33847335120
-
A genetic network for the clock of Neurospora crassa
-
Yu Y, Dong W, Altimus C, Tang X, Griffith J, et al. (2007) A genetic network for the clock of Neurospora crassa. Proceedings of the National Academy of Sciences of the United States of America 104 (8): 2809-2814.
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.8
, pp. 2809-2814
-
-
Yu, Y.1
Dong, W.2
Altimus, C.3
Tang, X.4
Griffith, J.5
-
12
-
-
0034625007
-
Computation, prediction, and experimental tests of fitness for bacteriophage T7 mutants with permuted genomes
-
Endy D, You L, Yin J, Molineux IJ, (2000) Computation, prediction, and experimental tests of fitness for bacteriophage T7 mutants with permuted genomes. Proceedings of the National Academy of Sciences of the United States of America 97 (10): 5375-5380.
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.10
, pp. 5375-5380
-
-
Endy, D.1
You, L.2
Yin, J.3
Molineux, I.J.4
-
13
-
-
33749315152
-
-
New York, Marcel Dekker
-
Arnold J, Schuttler HB, Battogtokh D, Griffith J, Arpinar B, et al. (2005) Handbook of industrial mycology New York Marcel Dekker pp. xvi 763.
-
(2005)
Handbook of Industrial Mycology
-
-
Arnold, J.1
Schuttler, H.B.2
Battogtokh, D.3
Griffith, J.4
Arpinar, B.5
-
14
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi JL, Iyer VR, Brown PO, (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science (New York, NY 278 (5338): 680-686.
-
(1997)
Science (New York, NY
, vol.278
, Issue.5338
, pp. 680-686
-
-
DeRisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
15
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi SP, Rist B, Gerber SA, Turecek F, Gelb MH, et al. (1999) Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nature biotechnology 17 (10): 994-999.
-
(1999)
Nature Biotechnology
, vol.17
, Issue.10
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
-
16
-
-
51849120153
-
Systems biology of the clock in Neurospora crassa
-
Dong W, Tang X, Yu Y, Nilsen R, Kim R, et al. (2008) Systems biology of the clock in Neurospora crassa. PloS one 3 (8): e3105.
-
(2008)
PloS One
, vol.3
, Issue.8
-
-
Dong, W.1
Tang, X.2
Yu, Y.3
Nilsen, R.4
Kim, R.5
-
17
-
-
40749105508
-
Variations in DNA elucidate molecular networks that cause disease
-
Chen Y, Zhu J, Lum PY, Yang X, Pinto S, et al. (2008) Variations in DNA elucidate molecular networks that cause disease. Nature 452 (7186): 429-435.
-
(2008)
Nature
, vol.452
, Issue.7186
, pp. 429-435
-
-
Chen, Y.1
Zhu, J.2
Lum, P.Y.3
Yang, X.4
Pinto, S.5
-
18
-
-
0023493883
-
A Model Fungal Gene Regulatory Mechanism - the Gal Genes of Saccharomyces cerevisiae
-
Johnston M, (1987) A Model Fungal Gene Regulatory Mechanism- the Gal Genes of Saccharomyces cerevisiae. Microbiological reviews 51 (4): 458-476.
-
(1987)
Microbiological Reviews
, vol.51
, Issue.4
, pp. 458-476
-
-
Johnston, M.1
-
19
-
-
0026388062
-
The Wilhelmine E. Key 1989 invitational lecture. Organization and regulation of the qa (quinic acid) genes in Neurospora crassa and other fungi
-
Giles NH, Geever RF, Asch DK, Avalos J, Case ME, (1991) The Wilhelmine E. Key 1989 invitational lecture. Organization and regulation of the qa (quinic acid) genes in Neurospora crassa and other fungi. The Journal of heredity 82 (1): 1-7.
-
(1991)
The Journal of Heredity
, vol.82
, Issue.1
, pp. 1-7
-
-
Giles, N.H.1
Geever, R.F.2
Asch, D.K.3
Avalos, J.4
Case, M.E.5
-
20
-
-
8644278216
-
Transcriptional response to glucose starvation and functional analysis of a glucose transporter of Neurospora crassa
-
Xie X, Wilkinson HH, Correa A, Lewis ZA, Bell-Pedersen D, et al. (2004) Transcriptional response to glucose starvation and functional analysis of a glucose transporter of Neurospora crassa. Fungal Genetics and Biology 41 (12): 1104-1119.
-
(2004)
Fungal Genetics and Biology
, vol.41
, Issue.12
, pp. 1104-1119
-
-
Xie, X.1
Wilkinson, H.H.2
Correa, A.3
Lewis, Z.A.4
Bell-Pedersen, D.5
-
21
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, et al. (2002) Transcriptional regulatory networks in Saccharomyces cerevisiae. Science (New York, NY 298 (5594): 799-804.
-
(2002)
Science (New York, NY
, vol.298
, Issue.5594
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
-
22
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature 431 (7004): 99-104.
-
(2004)
Nature
, vol.431
, Issue.7004
, pp. 99-104
-
-
Harbison, C.T.1
Gordon, D.B.2
Lee, T.I.3
Rinaldi, N.J.4
Macisaac, K.D.5
-
23
-
-
0021829055
-
Gene organization and regulation in the qa (quinic acid) gene cluster of Neurospora crassa
-
Giles NH, Case ME, Baum J, Geever R, Huiet L, et al. (1985) Gene organization and regulation in the qa (quinic acid) gene cluster of Neurospora crassa. Microbiological reviews 49 (3): 338-358.
-
(1985)
Microbiological Reviews
, vol.49
, Issue.3
, pp. 338-358
-
-
Giles, N.H.1
Case, M.E.2
Baum, J.3
Geever, R.4
Huiet, L.5
-
24
-
-
0022349927
-
Autogenous Regulation of the Positive Regulatory Qa-1f Gene in Neurospora crassa
-
Patel VB, Giles NH, (1985) Autogenous Regulation of the Positive Regulatory Qa-1f Gene in Neurospora crassa. Molecular and cellular biology 5 (12): 3593-3599.
-
(1985)
Molecular and Cellular Biology
, vol.5
, Issue.12
, pp. 3593-3599
-
-
Patel, V.B.1
Giles, N.H.2
-
25
-
-
0015367683
-
Genetic and Biochemical Evidence for Further Interrelationships between Polyaromatic Synthetic and Quinate-Shikimate Catabolic Pathways in Neurospora crassa
-
Case ME, Doy CH, Giles NH, (1972b) Genetic and Biochemical Evidence for Further Interrelationships between Polyaromatic Synthetic and Quinate-Shikimate Catabolic Pathways in Neurospora crassa. Genetics 71 (3): 337-&.
-
(1972)
Genetics
, vol.71
, Issue.3
, pp. 337
-
-
Case, M.E.1
Doy, C.H.2
Giles, N.H.3
-
26
-
-
58149464983
-
KINSOLVER: A simulator for computing large ensembles of biochemical and gene regulatory networks
-
Aleman-Meza B, Yu YH, Schuttler HB, Arnold J, Taha TR, (2009) KINSOLVER: A simulator for computing large ensembles of biochemical and gene regulatory networks. Comput Math Appl 57 (3): 420-435.
-
(2009)
Comput Math Appl
, vol.57
, Issue.3
, pp. 420-435
-
-
Aleman-Meza, B.1
Yu, Y.H.2
Schuttler, H.B.3
Arnold, J.4
Taha, T.R.5
-
27
-
-
0021278370
-
Cis-acting and trans-acting regulatory mutations define two types of promoters controlled by the qa-1F gene of Neurospora
-
Tyler BM, Geever RF, Case ME, Giles NH, (1984) Cis-acting and trans-acting regulatory mutations define two types of promoters controlled by the qa-1F gene of Neurospora. Cell 36 (2): 493-502.
-
(1984)
Cell
, vol.36
, Issue.2
, pp. 493-502
-
-
Tyler, B.M.1
Geever, R.F.2
Case, M.E.3
Giles, N.H.4
-
28
-
-
64049083493
-
Catabolite repression directly affects transcription of the qa-y gene of Neurospora crassa
-
Arnett DR, Lorimer HE, Asch DK, (2009) Catabolite repression directly affects transcription of the qa-y gene of Neurospora crassa. Fungal Genetics and Biology 46 (5): 377-380.
-
(2009)
Fungal Genetics and Biology
, vol.46
, Issue.5
, pp. 377-380
-
-
Arnett, D.R.1
Lorimer, H.E.2
Asch, D.K.3
-
29
-
-
0002866953
-
Genetic and microbiological research techniques for Neurospora crassa
-
Davis RH, De Serres FG, (1970) Genetic and microbiological research techniques for Neurospora crassa. Microbiological Reviews 27: 79-143.
-
(1970)
Microbiological Reviews
, vol.27
, pp. 79-143
-
-
Davis, R.H.1
de Serres, F.G.2
-
30
-
-
0015367683
-
Genetical and biochemical evidence for further interrelationships between the polyaromatic synthetic and the quinate-shikimate catabolic pathways in Neurospora crassa
-
Case ME, Giles NH, Doy CH, (1972a) Genetical and biochemical evidence for further interrelationships between the polyaromatic synthetic and the quinate-shikimate catabolic pathways in Neurospora crassa. Genetics 71 (3): 337-348.
-
(1972)
Genetics
, vol.71
, Issue.3
, pp. 337-348
-
-
Case, M.E.1
Giles, N.H.2
Doy, C.H.3
-
31
-
-
33750841999
-
"A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors" (vol 103, pg 10352, 2006)
-
Colot HV, Park G, Turner GE, Ringelberg C, Crew CM, et al. (2006) "A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors" (vol 103, pg 10352, 2006). Proceedings of the National Academy of Sciences of the United States of America 103 (44): 16614-16614.
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.44
, pp. 16614
-
-
Colot, H.V.1
Park, G.2
Turner, G.E.3
Ringelberg, C.4
Crew, C.M.5
-
33
-
-
2642651148
-
Recombination mechanisms at the pan-2 locus in Neurospora crassa
-
Case ME, Giles NH, (1958) Recombination mechanisms at the pan-2 locus in Neurospora crassa. Cold Spring Harbor Symposia 23: 119-135.
-
(1958)
Cold Spring Harbor Symposia
, vol.23
, pp. 119-135
-
-
Case, M.E.1
Giles, N.H.2
-
34
-
-
79958858480
-
Genetical and biochemical studies on the inducible quinic acid catabolic pathway in Neurospora crassa
-
PhD disseration. Yale University
-
Rines H, (1969) Genetical and biochemical studies on the inducible quinic acid catabolic pathway in Neurospora crassa. PhD disseration. Yale University.
-
(1969)
-
-
Rines, H.1
-
35
-
-
0016239768
-
The inducible quinate-shikimate catabolic pathway in Neurospora crassa: genetic organization
-
Chaleff RS, (1974a) The inducible quinate-shikimate catabolic pathway in Neurospora crassa: genetic organization. Journal of general microbiology 81 (2): 337-355.
-
(1974)
Journal of General Microbiology
, vol.81
, Issue.2
, pp. 337-355
-
-
Chaleff, R.S.1
-
36
-
-
0016185149
-
The inducible quinate-shikimate catabolic pathway in Neurospora crassa: induction and regulation of enzyme synthesis
-
Chaleff RS, (1974b) The inducible quinate-shikimate catabolic pathway in Neurospora crassa: induction and regulation of enzyme synthesis. Journal of general microbiology 81 (2): 357-372.
-
(1974)
Journal of General Microbiology
, vol.81
, Issue.2
, pp. 357-372
-
-
Chaleff, R.S.1
-
37
-
-
33644975004
-
RNA integrity and the effect on the real-time qRT-PCR performance
-
Fleige S, Pfaffl MW, (2006) RNA integrity and the effect on the real-time qRT-PCR performance. Mol Aspects of Med 27: 126-139.
-
(2006)
Mol Aspects of Med
, vol.27
, pp. 126-139
-
-
Fleige, S.1
Pfaffl, M.W.2
-
38
-
-
0035977158
-
Microarray analysis and organization of circadian gene expression Drosophila
-
McDonald MJ, Rosbash M, (2001) Microarray analysis and organization of circadian gene expression Drosophila. Cell 107 (5): 567-578.
-
(2001)
Cell
, vol.107
, Issue.5
, pp. 567-578
-
-
McDonald, M.J.1
Rosbash, M.2
-
39
-
-
29144452005
-
Long-oligomer microarray profiling in Neurospora crassa reveals the transcriptional program underlying biochemical and physiological events of conidial germination
-
Kasuga T, Townsend JP, Tian CG, Gilbert LB, Mannhaupt G, et al. (2005) Long-oligomer microarray profiling in Neurospora crassa reveals the transcriptional program underlying biochemical and physiological events of conidial germination. Nucleic acids research 33 (20): 6469-6485.
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.20
, pp. 6469-6485
-
-
Kasuga, T.1
Townsend, J.P.2
Tian, C.G.3
Gilbert, L.B.4
Mannhaupt, G.5
-
40
-
-
75749156884
-
The filamentous fungal gene expression database (FFGED)
-
Zhang Z, Townsend JP, (2010) The filamentous fungal gene expression database (FFGED). Fungal Genetics and Biology 47 (3): 199-204.
-
(2010)
Fungal Genetics and Biology
, vol.47
, Issue.3
, pp. 199-204
-
-
Zhang, Z.1
Townsend, J.P.2
-
41
-
-
84950968334
-
Least Median of Squares Regression
-
Rousseeuw PJ, (1984) Least Median of Squares Regression. J Am Stat Assoc 79 (388): 871-880.
-
(1984)
J Am Stat Assoc
, vol.79
, Issue.388
, pp. 871-880
-
-
Rousseeuw, P.J.1
-
42
-
-
0035733108
-
The control of the false discovery rate in multiple testing under dependency
-
Benjamini Y, Yekutieli D, (2001) The control of the false discovery rate in multiple testing under dependency. Ann Stat 29 (4): 1165-1188.
-
(2001)
Ann Stat
, vol.29
, Issue.4
, pp. 1165-1188
-
-
Benjamini, Y.1
Yekutieli, D.2
-
43
-
-
0037386469
-
What's in the genome of a filamentous fungus? Analysis of the Neurospora genome sequence
-
Mannhaupt G, Montrone C, Haase D, Mewes HW, Aign V, et al. (2003) What's in the genome of a filamentous fungus? Analysis of the Neurospora genome sequence. Nucleic acids research 31 (7): 1944-1954.
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.7
, pp. 1944-1954
-
-
Mannhaupt, G.1
Montrone, C.2
Haase, D.3
Mewes, H.W.4
Aign, V.5
-
44
-
-
3142756502
-
Open source clustering software
-
de Hoon MJL, Imoto S, Nolan J, Miyano S, (2004) Open source clustering software. Bioinformatics 20 (9): 1453-1454.
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1453-1454
-
-
de Hoon, M.J.L.1
Imoto, S.2
Nolan, J.3
Miyano, S.4
-
45
-
-
34547852214
-
Weighted rank aggregation of cluster validation measures: a Monte Carlo cross-entropy approach
-
Pihur V, Datta S, Datta S, (2007) Weighted rank aggregation of cluster validation measures: a Monte Carlo cross-entropy approach. Bioinformatics 23 (13): 1607-1615.
-
(2007)
Bioinformatics
, vol.23
, Issue.13
, pp. 1607-1615
-
-
Pihur, V.1
Datta, S.2
Datta, S.3
-
46
-
-
9444225935
-
Java Treeview-extensible visualization of microarray data
-
Saldanha AJ, (2004) Java Treeview-extensible visualization of microarray data. Bioinformatics 20 (17): 3246-3248.
-
(2004)
Bioinformatics
, vol.20
, Issue.17
, pp. 3246-3248
-
-
Saldanha, A.J.1
-
47
-
-
0037464589
-
The genome sequence of the filamentous fungus Neurospora crassa
-
Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, et al. (2003) The genome sequence of the filamentous fungus Neurospora crassa. Nature 422 (6934): 859-868.
-
(2003)
Nature
, vol.422
, Issue.6934
, pp. 859-868
-
-
Galagan, J.E.1
Calvo, S.E.2
Borkovich, K.A.3
Selker, E.U.4
Read, N.D.5
-
50
-
-
2942612362
-
Resolution of large and small differences in gene expression using models for the Bayesian analysis of gene expression levels and spotted DNA microarrays
-
doi:10.1186/1471-2105-5-54
-
Townsend T, (2004) Resolution of large and small differences in gene expression using models for the Bayesian analysis of gene expression levels and spotted DNA microarrays. BMC Bioinformatics 5: 54 doi:10.1186/1471-2105-5-54.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 54
-
-
Townsend, T.1
-
51
-
-
0014262209
-
Acetate-nonutilizing mutants of Neurospora crassa
-
Flavell RB, Fincham JRS, (1968) Acetate-nonutilizing mutants of Neurospora crassa. J Bacteriology 95: 1063-1068.
-
(1968)
J Bacteriology
, vol.95
, pp. 1063-1068
-
-
Flavell, R.B.1
Fincham, J.R.S.2
-
52
-
-
0033982936
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Kanehisa M, Goto S, (2000) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic acids research 28 (1): 27-30.
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
53
-
-
48449090785
-
KEGG Atlas mapping for global analysis of metabolic pathways
-
Okuda S, Yamada T, Hamajima M, Itoh M, Katayama T, et al. (2008) KEGG Atlas mapping for global analysis of metabolic pathways. Nucleic acids research 36: W423-W426.
-
(2008)
Nucleic Acids Research
, vol.36
, pp. 423-426
-
-
Okuda, S.1
Yamada, T.2
Hamajima, M.3
Itoh, M.4
Katayama, T.5
-
54
-
-
0029795374
-
The β-ketoadipate pathway and the biology of self-identity
-
Harwood CS, Parales RE, (1996) The β-ketoadipate pathway and the biology of self-identity. Annu Rev Microbiol 50: 553-590.
-
(1996)
Annu Rev Microbiol
, vol.50
, pp. 553-590
-
-
Harwood, C.S.1
Parales, R.E.2
-
55
-
-
42749109054
-
Statistical mechanical approaches to models with many poorly known parameters
-
021904-1-021904-9
-
Brown KS, Sethna JP, (2003) Statistical mechanical approaches to models with many poorly known parameters. Phys Rev E 68 (2) 021904-1-021904-9.
-
(2003)
Phys Rev E
, vol.68
, Issue.2
-
-
Brown, K.S.1
Sethna, J.P.2
-
56
-
-
42649096925
-
Bayesian inference of the sites of perturbations in metabolic pathways via Markov chain Monte Carlo
-
Jayawardhana B, Kell DB, Rattray M, (2008) Bayesian inference of the sites of perturbations in metabolic pathways via Markov chain Monte Carlo. Bioinformatics 24 (9): 1191-1197.
-
(2008)
Bioinformatics
, vol.24
, Issue.9
, pp. 1191-1197
-
-
Jayawardhana, B.1
Kell, D.B.2
Rattray, M.3
-
57
-
-
41449088987
-
beta(2)-adrenergic receptor signaling and desensitization elucidated by quantitative modeling of real time cAMP dynamics
-
Violin JD, DiPilato LM, Yildirim N, Elston TC, Zhang J, et al. (2008) beta(2)-adrenergic receptor signaling and desensitization elucidated by quantitative modeling of real time cAMP dynamics. Journal of Biological Chemistry 283 (5): 2949-2961.
-
(2008)
Journal of Biological Chemistry
, vol.283
, Issue.5
, pp. 2949-2961
-
-
Violin, J.D.1
DiPilato, L.M.2
Yildirim, N.3
Elston, T.C.4
Zhang, J.5
-
58
-
-
58149142997
-
Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems
-
Toni T, Welch D, Strelkowa N, Ipsen A, Stumpf MPH, (2009) Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems. J R Soc Interface 6 (31): 187-202.
-
(2009)
J R Soc Interface
, vol.6
, Issue.31
, pp. 187-202
-
-
Toni, T.1
Welch, D.2
Strelkowa, N.3
Ipsen, A.4
Stumpf, M.P.H.5
-
59
-
-
0001768731
-
Vectors for expression and modification of cDNA sequences in Neurospora crassa
-
Campbell JW, Enderlin CS, Selitrennikoff CP, (1994) Vectors for expression and modification of cDNA sequences in Neurospora crassa. Fung Gen News 41: 20-21.
-
(1994)
Fung Gen News
, vol.41
, pp. 20-21
-
-
Campbell, J.W.1
Enderlin, C.S.2
Selitrennikoff, C.P.3
-
60
-
-
0034704248
-
Genome-wide location and function of DNA binding proteins
-
Ren B, Robert F, Wyrick JJ, Aparicio O, Jennings EG, et al. (2000) Genome-wide location and function of DNA binding proteins. Science (New York, NY 290 (5500): 2306-+.
-
(2000)
Science (New York, NY
, vol.290
, Issue.5500
-
-
Ren, B.1
Robert, F.2
Wyrick, J.J.3
Aparicio, O.4
Jennings, E.G.5
-
61
-
-
78049304837
-
Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes
-
Bordel S, Agren R, Nielsen J, (2010) Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes. PLoS Computational Biology 6: e10000859.
-
(2010)
PLoS Computational Biology
, vol.6
-
-
Bordel, S.1
Agren, R.2
Nielsen, J.3
-
62
-
-
0033857139
-
Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry
-
Teusink B, Passarge J, Reijenga CA, Esgalhado E, Van der Weijden CC, (2000) Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry. Eur J Biochem 267: 5319-5339.
-
(2000)
Eur J Biochem
, vol.267
, pp. 5319-5339
-
-
Teusink, B.1
Passarge, J.2
Reijenga, C.A.3
Esgalhado, E.4
van der Weijden, C.C.5
-
63
-
-
78649640089
-
A systems biology approach uncovers cellular strategies used by Methylobacterium extorquens AM1 using the switch from multi- to single-carbon growth
-
Skovran E, Crowther GJ, Guo X, Yang S, Lidstrom ME, (2010) A systems biology approach uncovers cellular strategies used by Methylobacterium extorquens AM1 using the switch from multi- to single-carbon growth. PLoS ONE 5: e14901.
-
(2010)
PLoS ONE
, vol.5
-
-
Skovran, E.1
Crowther, G.J.2
Guo, X.3
Yang, S.4
Lidstrom, M.E.5
-
64
-
-
12144287318
-
Lessons from the genome sequence of Neurospora crassa: Tracing the path from genomic blueprint to multicellular organism
-
Borkovich KA, Alex LA, Yarden O, Freitag M, Turner GE, et al. (2004) Lessons from the genome sequence of Neurospora crassa: Tracing the path from genomic blueprint to multicellular organism. Microbiol Mol Biol R 68 (1): 1-+.
-
(2004)
Microbiol Mol Biol R
, vol.68
, Issue.1
-
-
Borkovich, K.A.1
Alex, L.A.2
Yarden, O.3
Freitag, M.4
Turner, G.E.5
-
65
-
-
67349203997
-
Genome-wide analysis of light-inducible responses reveals hierarchical light signalling in Neurospora
-
Chen CH, Ringelberg CS, Gross RH, Dunlap JC, Loros JJ, (2009) Genome-wide analysis of light-inducible responses reveals hierarchical light signalling in Neurospora. The EMBO journal 28 (8): 1029-1042.
-
(2009)
The EMBO Journal
, vol.28
, Issue.8
, pp. 1029-1042
-
-
Chen, C.H.1
Ringelberg, C.S.2
Gross, R.H.3
Dunlap, J.C.4
Loros, J.J.5
-
66
-
-
0014150072
-
The occurrence of two dehydroquinases in Neurospora crassa, one constitutive and one inducible
-
Giles NH, Partridge CW, Ahmed SI, Case ME, (1967) The occurrence of two dehydroquinases in Neurospora crassa, one constitutive and one inducible. Proceedings of the National Academy of Sciences of the United States of America 58 (5): 1930-1937.
-
(1967)
Proceedings of the National Academy of Sciences of the United States of America
, vol.58
, Issue.5
, pp. 1930-1937
-
-
Giles, N.H.1
Partridge, C.W.2
Ahmed, S.I.3
Case, M.E.4
-
68
-
-
0347762745
-
Identifying constraints that govern cell behavior: A key to converting conceptual to computational models in biology?
-
Covert MW, Famili I, Palsson BO, (2003) Identifying constraints that govern cell behavior: A key to converting conceptual to computational models in biology? Biotechnol Bioeng 84 (7): 763-772.
-
(2003)
Biotechnol Bioeng
, vol.84
, Issue.7
, pp. 763-772
-
-
Covert, M.W.1
Famili, I.2
Palsson, B.O.3
-
69
-
-
0022731304
-
Fexact - a fortran subroutine for fisher exact test on unordered R×C contingency tables
-
Mehta CR, Patel NR, (1986) Fexact- a fortran subroutine for fisher exact test on unordered R×C contingency tables. ACM Transactions on Mathematical Software 12: 154-161.
-
(1986)
ACM Transactions on Mathematical Software
, vol.12
, pp. 154-161
-
-
Mehta, C.R.1
Patel, N.R.2
|