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Volumn 6, Issue 6, 2011, Pages

The effect of using an inappropriate protein database for proteomic data analysis

Author keywords

[No Author keywords available]

Indexed keywords

ACTIN; TUBULIN; FUNGAL PROTEIN; INSECT PROTEIN; VIRUS PROTEIN;

EID: 79958777442     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0020873     Document Type: Review
Times cited : (53)

References (10)
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    • Aebersold, R.1    Mann, M.2
  • 3
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    • An Approach to Correlate Tandem Mass-Spectral Data of Peptides with Amino-Acid-Sequences in a Protein Database
    • Eng JK, Mccormack AL, Yates JR, (1994) An Approach to Correlate Tandem Mass-Spectral Data of Peptides with Amino-Acid-Sequences in a Protein Database. Journal of the American Society for Mass Spectrometry 5: 976-989.
    • (1994) Journal of the American Society for Mass Spectrometry , vol.5 , pp. 976-989
    • Eng, J.K.1    Mccormack, A.L.2    Yates, J.R.3
  • 4
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • Keller A, Nesvizhskii AI, Kolker E, Aebersold R, (2002) Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Analytical Chemistry 74: 5383-5392.
    • (2002) Analytical Chemistry , vol.74 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4
  • 5
    • 33847630405 scopus 로고    scopus 로고
    • Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
    • Elias JE, Gygi SP, (2007) Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat Methods 4: 207-214.
    • (2007) Nat Methods , vol.4 , pp. 207-214
    • Elias, J.E.1    Gygi, S.P.2
  • 6
    • 39049191583 scopus 로고    scopus 로고
    • Proteomic data exchange and storage: the need for common standards and public repositories
    • Orchard S, Jones P, Taylor C, Zhu W, Julian RK Jr, et al. (2007) Proteomic data exchange and storage: the need for common standards and public repositories. Methods Mol Biol 367: 261-270.
    • (2007) Methods Mol Biol , vol.367 , pp. 261-270
    • Orchard, S.1    Jones, P.2    Taylor, C.3    Zhu, W.4    Julian Jr., R.K.5
  • 7
    • 79958811476 scopus 로고    scopus 로고
    • Revised Publication Guidelines for Documenting the Identification and Quantification of Peptides, Proteins, and Post-Translational Modifications by Mass Spectrometry
    • Available:. Accessed 2011 May 17
    • Revised Publication Guidelines for Documenting the Identification and Quantification of Peptides, Proteins, and Post-Translational Modifications by Mass Spectrometry. Available: http://mcponline.org/site/misc/PhialdelphiaGuidelinesFINALDRAFT.pdf. Accessed 2011 May 17.
  • 8
    • 43549101341 scopus 로고    scopus 로고
    • Proteomics FASTA archive and reference resource
    • Falkner JA, Hill JA, Andrews PC, (2008) Proteomics FASTA archive and reference resource. Proteomics 8: 1756-1757.
    • (2008) Proteomics , vol.8 , pp. 1756-1757
    • Falkner, J.A.1    Hill, J.A.2    Andrews, P.C.3
  • 10
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    • Interpretation of data underlying the link between CCD and an invertebrate iridescent virus
    • Foster LJ, (2011) Interpretation of data underlying the link between CCD and an invertebrate iridescent virus. Mol Cell Proteomics.
    • (2011) Mol Cell Proteomics
    • Foster, L.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.