Quantitative trait loci analysis for resistance to cephalosporium stripe, a vascular wilt disease of wheat

Theoretical and Applied Genetics

Volumn 122, Issue 7, 2011, Pages 1339-1349

  Quincke, Martin C ^a,b   Peterson, C James ^a,c   Zemetra, Robert S ^e   Hansen, Jennifer L ^f   Chen, Jianli ^g   Riera Lizarazu, Oscar ^a,d   Mundt, Christopher C ^a  

^a OREGON STATE UNIVERSITY   (United States)

^b INSTITUTO NACIONAL DE INVESTIGACIÓN AGROPECUARIA INIA   (Uruguay)

^c Limagrain Cereals Seeds ^*  (United States)

^d INTERNATIONAL CROPS RESEARCH INSTITUTE FOR THE SEMI ARID TROPICS ICRISAT   (India)

^e UNIVERSITY OF IDAHO   (United States)

^f WASHINGTON STATE UNIVERSITY   (United States)

^g UNIVERSITY OF IDAHO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADDITIVE EFFECTS; ADDITIVITY; CONSERVATION TILLAGE; GRAIN QUALITY; INOCULUM LEVEL; LINKAGE GROUPS; LINKAGE MAP; MOLECULAR MARKER; NATURAL CONDITIONS; OPTIMUM CONDITIONS; PATHOGEN INFECTION; POLYMORPHIC MARKERS; QTL EFFECTS; QUANTITATIVE TRAIT LOCUS; RECOMBINANT INBRED LINES; VASCULAR WILT DISEASE; WHEAT (TRITICUM AESTIVUM L.); WHEAT CULTIVARS;

AGRICULTURE; CHROMOSOMES; REGRESSION ANALYSIS;

PLANTS (BOTANY);

PLANT DNA;

ACREMONIUM; ARTICLE; CHROMOSOME MAP; CROSS BREEDING; GENETIC MARKER; GENETIC POLYMORPHISM; GENETICS; GROWTH, DEVELOPMENT AND AGING; IMMUNOLOGY; INNATE IMMUNITY; ISOLATION AND PURIFICATION; MICROBIOLOGY; PATHOGENICITY; PLANT CHROMOSOME; PLANT DISEASE; PLANT GENE; QUANTITATIVE TRAIT LOCUS; WHEAT;

ACREMONIUM; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; CROSSES, GENETIC; DNA, PLANT; GENES, PLANT; GENETIC MARKERS; IMMUNITY, INNATE; PLANT DISEASES; POLYMORPHISM, GENETIC; QUANTITATIVE TRAIT LOCI; TRITICUM;

CEPHALOSPORIUM; CEPHALOSPORIUM GRAMINEUM; TRITICUM AESTIVUM;

EID: 79958751344     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-011-1535-6     Document Type: Article

References (87)

1. Allan RE, Morris CF, Line RF, Anderson JA, Walker-Simmons MK, Donaldson E (2000) Registration of 'Coda' club wheat. Crop Sci 40:578-579
2. Bailey JE, Lockwood JL, Wiese MV (1982) Infection of wheat by Cephalosporium gramineum as influenced by freezing of roots.Phytopathology 72:1324-1328
3. Blank CA, Murray TD (1998) Influence of pH and matric potential on germination of Cephalosporium gramineum conidia. Plant Dis 82:975-978
4. Bockus WW, O'Connor JP, Raymond PJ (1983) Effect of residue management method on incidence of Cephalosporium stripe under continuous winter wheat production. Plant Dis 67:1323-1324
5. Bockus WW, Davis MA, Todd TC (1994) Grain-yield responses of winter wheat coinoculated with Cephalosporium gramineum and Gaeumannomyces graminis var tritici. Plant Dis 78:11-14
6. Bovill WD, Horne M, Herde D, Davis M, Wildermuth GB, Sutherland MW (2010) Pyramiding QTL increases seedling resistance to crown rot (Fusarium pseudograminearum) of wheat (Triticum aestivum). Theor Appl Genet 121:127-136
7. Bruehl GW (1956) Cephalosporium stripe disease of wheat in Washington. Phytopathology 46:178-180
8. Bruehl GW (1957) Cephalosporium stripe disease of wheat. Phytopathology 47:641-649
9. Bruehl GW (1983) Nonspecific genetic-resistance to soilborne fungi. Phytopathology 73:948-951
10. Bruehl GW, Lai P (1968) Influence of soil pH and humidity on survival of Cephalosporium gramineum in infested wheat straw. Can J Plant Sci 48:245-252
11. Bruehl GW, Murray TD, Allan RE (1986) Resistance of winter wheats to Cephalosporium stripe in the field. Plant Dis 70:314-316
12. Collard BCY, Jahufer MZZ, Brouwer JB, Pang ECK (2005) An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: the basic concepts. Euphytica 142:169-196
13. Creatura PJ, Safir GR, Scheffer RP, Sharkey TD (1981) Effects of Cephalosporium gramineum and a toxic metabolite on stomatal conductance of wheat. Physiol Plant Pathol 19:313-323
14. Douhan GW, Murray TD (2001) Infection of winter wheat by a betaglucuronidase- transformed isolate of Cephalosporium gramineum. Phytopathology 91:232-239
15. Edwards JD, McCouch SR (2007) Molecular markers for use in plant molecular breeding and germplasm evaluation. In: Guimaraes E, Ruane J, Scherf B, Sonnino A, Dargie J (eds) Guimarês. Markerassisted selection: current status and future perspectives in crops, livestock, forestry and fish. FAO, Rome, pp 29-49
16. Ellingboe AH (1983) Genetic aspects of interaction between plant hosts and their soilborne pathogens. Phytopathology 73:941-944
17. Ellis JB, Everhart BM (1894) New species of fungi from various localities. Proc Acad Nat Sci Phila 46:322-386
18. Faris JD, Anderson JA, Francl LJ, Jordahl JG (1996) Chromosomal location of a gene conditioning insensitivity in wheat to a necrosis-inducing culture filtrate from Pyrenophora triticirepentis. Phytopathology 86:459-463
19. Fernandez MGS, Hamblin MT, Li L, Rooney WL, Tuinstra MP, Kresovich S (2008) Quantitative trait loci analysis of endosperm color and carotenoid content in sorghum grain. Crop Sci 48:1732-1743
20. Friesen TL, Stukenbrock EH, Liu ZH, Meinhardt S, Ling H, Faris JD, Rasmussen JB, Solomon PS, McDonald BA, Oliver RP (2006) Emergence of a new disease as a result of interspecific virulence gene transfer. Nat Genet 38:953-956
21. Geiger HH, Heun M (1989) Genetics of quantitative resistance to fungal diseases. Annu Rev Phytopathol 27:317-341
22. Gonzalez-Hernandez JL, Singh PK, Mergoum M, Adhikari TB, Kianian SF, Simsek S, Elias EM (2009) A quantitative trait locus on chromosome 5B controls resistance of Triticum turgidum (L.) var. diccocoides to Stagonospora nodorum blotch. Euphytica 166:199-206
23. Gul A, Allan RE (1972) Relation of club gene with yield and yield components of near-isogenic wheat lines. Crop Sci 12:297-301
24. Gupta PK, Varshney RK, Sharma PC, Ramesh B (1999) Molecular markers and their applications in wheat breeding. Plant Breed 118:369-390
25. Gupta PK, Mir RR, Mohan A, Kumar J (2008) Wheat genomics: present status and future prospects. Int J Plant Genomics 2008:1-36
26. Hernandez-Delgado S, Reyes-Valdes MH, Rosa R, Mayek-Perez N (2009) Molecular markers associated with resistance to Macrophomina phaseolina (Tassi) Goid. in common bean. J Plant Pathol 91:163-170
27. Horvath DP, Dahleen LS, Stebbing JA, Penner G (1995) A codominant PCR-based marker for assisted selection of durable stem rust resistance in barley. Crop Sci 35:1445-1450
28. Johnson EB, Nalam VJ, Zemetra RS, Riera-Lizarazu O (2008) Mapping the compactum locus in wheat (Triticum aestivum L.) and its relationship to other spike morphology genes of the Triticeae. Euphytica 163:193-201
29. Johnston RH, Mathre DE (1972) Effect of infection by Cephalosporium gramineum on winter wheat. Crop Sci 12:817-819
30. Kao CH, Zeng ZB, Teasdale RD (1999) Multiple interval mapping for quantitative trait loci. Genetics 152:1203-1216
31. Kato K, Miura H, Akiyama M, Kuroshima M, Sawada S (1998) RFLP mapping of the three major genes, Vrn1, Q and B1, on the long arm of chromosome 5A of wheat. Euphytica 101:91-95
32. Kim HJ, Nahm SH, Lee HR, Yoon GB, Kim KT, Kang BC, Choi D, Kweon O, Cho MC, Kwon JK, Han JH, Kim JH, Park M, Ahn J, Choi S, Her N, Sung JH, Kim BD (2008) BAC-derived markers converted from RFLP linked to Phytophthora capsici resistance in pepper (Capsicum annuum L.). Theor Appl Genet 118:15-27
33. Knapp SJ, Stroup WW, Ross WM (1985) Exact confidence intervals for heritability on a progeny mean basis. Crop Sci 25:192-194
34. Kobayashi K, Ui T (1979) Phytotoxicity and anti-microbial activity of graminin A, produced by Cephalosporium gramineum, the causal agent of Cephalosporium stripe disease of wheat. Physiol Plant Pathol 14:129-133
35. Kover PX, Caicedo AL (2001) The genetic architecture of disease resistance in plants and the maintenance of recombination by parasites. Mol Ecol 10:1-16
36. Kumar N, Kulwal PL, Gaur A, Tyagi AK, Khurana JP, Khurana P, Balyan HS, Gupta PK (2006) QTL analysis for grain weight in common wheat. Euphytica 151:135-144
37. Lai P, Bruehl GW (1966) Survival of Cephalosporium gramineum in naturally infested wheat straws in soil in the field and in the laboratory. Phytopathology 56:213-218
38. Latin RX, Harder RW, Wiese MV (1982) Incidence of Cephalosporium stripe as influenced by winter wheat management practices. Plant Dis 66:229-230
39. Lein JC, Sagstetter CM, Schulte D, Thurau T, Varrelmann M, Saal B, Koch G, Borchardt DC, Jung C (2008) Mapping of Rhizoctonia root rot resistance genes in sugar beet using pathogen responserelated sequences as molecular markers. Plant Breed 127:602-611
40. Leonard JM, Watson CJW, Carter AH, Hansen JL, Zemetra RS, Santra DK, Campbell KG, Riera-Lizarazu O (2008) Identification of a candidate gene for the wheat endopeptidase Ep-D1 locus and two other STS markers linked to the eyespot resistance gene Pch1. Theor Appl Genet 116:261-270
41. Li HJ, Conner RL, Murray TD (2008) Resistance to soil-borne diseases of wheat: contributions from the wheatgrasses Thinopyrum intermedium and Th. ponticum. Can J Plant Sci 88:195-205
42. Li HB, Zhou MX, Liu CJ (2009) A major QTL conferring crown rot resistance in barley and its association with plant height. Theor Appl Genet 118:903-910
43. Lillemo M, Asalf B, Singh RP, Huerta-Espino J, Chen XM, He ZH, Bjornstad A (2008) The adult plant rust resistance loci Lr34/ Yr18 and Lr46/Yr29 are important determinants of partial resistance to powdery mildew in bread wheat line Saar. Theor Appl Genet 116:1155-1166.
44. Liu ZH, Friesen TL, Ling H, Meinhardt SW, Oliver RP, Rasmussen JB, Faris JD (2006) The Tsn1-ToxA interaction in the wheat-Stagonospora nodorum pathosystem parallels that of the wheattan spot system. Genome 49:1265-1273
45. Marshall DR, Langridge P, Appels R (2001) Wheat breeding in the new century-preface. Aust J Agric Res 52:1-4
46. Martin JM, Mathre DE, Johnston RH (1983) Genetic variation for reaction to Cephalosporium gramineum in four crosses of winter wheat. Can J Plant Sci 63:623-630
47. Martin JM, Mathre DE, Johnston RH (1986) Winter wheat genotype responses to Cephalosporium gramineum inoculum levels. Plant Dis 70:421-423
48. Martin JM, Johnston RH, Mathre DE (1989) Factors affecting the severity of Cephalosporium stripe of winter wheat. Can J Plant Pathol 11:361-367
49. Marza F, Bai GH, Carver BF, Zhou WC (2006) Quantitative trait loci for yield and related traits in the wheat population Ning7840 9 Clark. Theor Appl Genet 112:688-698
50. Mathre DE, Johnston RH (1975a) Cephalosporium stripe of winter wheat-procedures for determining host response. Crop Sci 15:591-594
51. Mathre DE, Johnston RH (1975b) Cephalosporium stripe of winter wheat: infection processes and host response. Phytopathology 65:1244-1249
52. Mathre DE, Johnston RH (1990) A crown barrier related to Cephalosporium stripe resistance in wheat relatives. Can J Bot 68:1511-1514
53. Mathre DE, Johnston RH, McGuire CF (1977) Cephalosporium stripe of winter wheat-pathogen virulence, sources of resistance, and effect on grain quality. Phytopathology 67:1142-1148
54. Mathre DE, Johnston RH, Martin JM (1985) Sources of resistance to Cephalosporium gramineum in Triticum and Agropyron species. Euphytica 34:419-424
55. Melchinger AE, Utz HF, Schon GC (2004) QTL analyses of complex traits with cross validation, bootstrapping and other biometric methods. Euphytica 137:1-11
56. Morton JB, Mathre DE (1980a) Identification of resistance to Cephalosporium stripe in winter wheat. Phytopathology 70:812-817
57. Morton JB, Mathre DE (1980b) Physiological effects of Cephalosporium gramineum on growth and yield of winter wheat cultivars. Phytopathology 70:807-811
58. Mundt CC (2002) Performance of wheat cultivars and cultivar mixtures in the presence of Cephalosporium stripe. Crop Prot 21:93-99
59. Murray T (2006) Seed transmission of Cephalosporium gramineum in winter wheat. Plant Dis 90:803-806
60. Murray TD, Walter CC, Anderegg JC (1992) Control of Cephalosporium stripe of winter wheat by liming. Plant Dis 76:282-286
61. Nisikado Y, Matsumoto H, Yamuti K (1934) Studies on a new Cephalosporium, which causes the stripe disease of wheat. Bericht des Ohara Instituts fur Landwirtschaftliche Forschungen 6:275-306
62. Pool RAF, Sharp EL (1969) Some environmental and cultural factors affecting Cephalosporium stripe of winter wheat. Plant Dis Reptr 53:898-902
63. Rahman M, Mundt CC, Wolpert TJ, Riera-Lizarazu O (2001)Sensitivity of wheat genotypes to a toxic fraction produced by Cephalosporium gramineum and correlation with disease susceptibility. Phytopathology 91:702-707
64. Raymond PJ, Bockus WW (1984) Effect of seeding date of winter wheat on incidence, severity, and yield loss caused by Cephalosporium stripe in Kansas. Plant Dis 68:665-667
65. Rebetzke GJ, Appels R, Morrison AD, Richards RA, McDonald G, Ellis MH, Spielmeyer W, Bonnett DG (2001) Quantitative trait loci on chromosome 4B for coleoptile length and early vigour in wheat (Triticum aestivum L.). Aust J Agric Res 52:1221-1234
66. Richardson MJ, Rennie WJ (1970) An estimate of the loss of yield caused by Cephalosporium gramineum in wheat. Plant Pathol 19:138-140
67. Rygulla W, Snowdon RJ, Friedt W, Happstadius I, Cheung WY, Chen D (2008) Identification of quantitative trait loci for resistance against Verticillium longisporum in oilseed rape (Brassica napus). Phytopathology 98:215-221
68. Schneider KA, Grafton KF, Kelly JD (2001) QTL analysis of resistance to Fusarium root rot in bean. Crop Sci 41:535-542
69. Slope DB, Bardner R (1965) Cephalosporium stripe of wheat and root damage by insects. Plant Pathol 14:184-187
70. Sourdille P, Tixier MH, Charmet G, Gay G, Cadalen T, Bernard S, Bernard M (2000) Location of genes involved in ear compactness in wheat (Triticum aestivum) by means of molecular markers. Mol Breed 6:247-255
71. Spalding DH, Bruehl GW, Foster RJ (1961) Possible role of pectinolytic enzymes and polysaccharide in pathogenesis by Cephalosporium gramineum in wheat. Phytopathology 51:227-235
72. Specht LP, Murray TD (1990) Effects of root-wounding and inoculum density on Cephalosporium stripe in winter wheat. Phytopathology 80:1108-1114
73. Taguchi K, Ogata N, Kubo T, Kawasaki S, Mikami T (2009) Quantitative trait locus responsible for resistance to Aphanomyces root rot (black root) caused by Aphanomyces cochlioides Drechs. in sugar beet. Theor Appl Genet 118:227-234
74. Tang SX, Leon A, Bridges WC, Knapp SJ (2006) Quantitative trait loci for correlated seed traits are tightly linked to branching and pericarp pigment loci in sunflower. Crop Sci 46:721-734
75. Tomas A, Feng GH, Reeck GR, Bockus WW, Leach JE (1990) Purification of a cultivar-specific toxin from Pyrenophora triticirepentis, causal agent of tan spot of wheat. Mol Plant Microbe Interact 3:221-224
76. Tsunewaki K, Koba T (1979) Production and genetic-characterization of the co-isogenic lines of a common wheat Triticum aestivum CV. S-615 for ten major genes. Euphytica 28:579-592
77. Vales MI, Schon CC, Capettini F, Chen XM, Corey AE, Mather DE, Mundt CC, Richardson KL, Sandoval-Islas JS, Utz HF, Hayes PM (2005) Effect of population size on the estimation of QTL: a test using resistance to barley stripe rust. Theor Appl Genet 111:1260-1270
78. Van Ooijen JW, Kyazma BV (2006) JoinMap 4, Software for the calculation of genetic linkage maps in experimental populations. Wageningen, Netherlands
79. Van Wert SL, Ravenscroft AV, Fulbright DW (1984) Screening wheat lines as seedlings for resistance to Cephalosporium gramineum. Plant Dis 68:1036-1038
80. Wang S, Basten CJ, Zeng Z-B (2007) Windows QTL Cartographer 2.5. Department of Statistics, North Carolina State University, Raleigh
81. Wang HM, Lin ZX, Zhang XL, Chen W, Guo XP, Nie YC, Li YH (2008) Mapping and quantitative trait loci analysis of Verticillium wilt resistance genes in cotton. J Integr Plant Biol 50:174-182
82. Wiese MV (1987) Compendium of wheat diseases, 2nd edn. APS Press, St. Paul
83. Xu YB, Crouch JH (2008) Marker-assisted selection in plant breeding: from publications to practice. Crop Sci 48:391-407
84. Young ND (1996) QTL mapping and quantitative disease resistance in plants. Annu Rev Phytopathol 34:479-501
85. Zemetra RS, Souza EJ, Lauver M, Windes J, Guy SO, Brown B, Robertson L, Kruk M (1998) Registration of 'Brundage' wheat.Crop Sci 38:1404
86. Zeng ZB (1994) Precision mapping of quantitative trait loci. Genetics 136:1457-1468
87. Zwer PK, Sombrero A, Rickman RW, Klepper B (1995) Club and common wheat yield component and spike development in the Pacific Northwest. Crop Sci 35:1590-1597