Mapping of rhizoctonia root rot resistance genes in sugar beet using pathogen response-related sequences as molecular markers

Plant Breeding

Volumn 127, Issue 6, 2008, Pages 602-611

  Lein, J C ^a   Sagstetter, C M ^a   Schulte, D ^a   Thurau, T ^a   Varrelmann, M ^b   Saal, B ^c   Koch, G ^d   Borchardt, D C ^e   Jung, C ^a  

^a UNIVERSITY OF KIEL   (Germany)

^b UNIVERSITY OF GÖTTINGEN   (Germany)

^c MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

^d A Dieckmann Heimburg ^*  (Germany)

^e KWS SAAT SE   (Germany)

Author keywords

BAC; Beta vulgaris; Functional marker; QTL; Resistance gene analogue; Rhizoctonia solani

Indexed keywords

BACTERIA (MICROORGANISMS); BETA VULGARIS; BETA VULGARIS SUBSP. VULGARIS; FUNGI; HYPHOMYCETES; RHIZOCTONIA; THANATEPHORUS CUCUMERIS;

EID: 56849131807     PISSN: 01799541     EISSN: 14390523     Source Type: Journal    
DOI: 10.1111/j.1439-0523.2008.01525.x     Document Type: Article

References (47)

1. Altschul, S. F., T. L. Madden, A. A. Schäffer, J. Zhang, Z. Zhang, W. Miller D. J. Lipman, 1997 : Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389 3402.
2. Andersen, J. R. T. Lübberstedt, 2003 : Functional markers in plants. Trends Plant Sci. 8, 554 560.
3. Bellin, D., M. Werber, T. Theis, B. Schulz, B. Weisshaar K. Schneider, 2002 : EST sequencing, annotation and macroarray transcriptome analysis identify preferentially root-expressed genes in sugar beet. Plant Biol. 4, 700 710.
4. Bugbee, W. M., 1993 : A pectin lyase inhibitor protein from cell-walls of sugar-beet. Phytopathology 83, 63 68.
5. Büttner, G., B. Pfähler J. Petersen, 2003 : Rhizoctonia root rot in Europe - incidence, economic importance and concept for integrated control. Proceedings of the 1st Joint IIRB-ASSBT Congress, February 2003, San Antonia, TX, USA, 897 901.
6. Büttner, G., B. Pfähler B. Märländer, 2004 : Greenhouse and field techniques for testing sugar beet for resistance to Rhizoctonia root and crown rot. Plant Breeding 123, 158 166.
7. Clement, D., C. Lanaud, X. Sabau, O. Fouet, L. Le Cunff, E. Ruiz, A. M. Risterucci, J. C. Glaszmann P. Piffanelli, 2004 : Creation of BAC genomic resources for cocoa (Theobroma cacao L.) for physical mapping of RGA containing BAC clones. Theor. Appl. Genet. 108, 1627 1634.
8. Dangl, J. L. J. D. G. Jones, 2001 : Plant pathogens and integrated defence responses to infection. Nature 411, 826 833.
9. Dixon, R. A. M. J. Harrison, 1990 : Activation, structure, and organization of genes involved in microbial defense in plants. Adv. Genet. 28, 165 234.
10. Duffus, J. E. E. G. Ruppel, 1993 : Diseases. In : D. A. Cooke R. K. Scott (eds The Sugar Beet Crop, 346 427. Chapman&Hall, London.
11. Elliger, C. A. J. M. Halloin, 1994 : Phenolics induced in Beta vulgaris by Rhizoctonia solani infection. Phytochemistry 37, 691 693.
12. Engelkes, C. A. C. E. Windels, 1994 : Relationship of plant-age, cultivar, and isolate of Rhizoctonia solani Ag-2-2 to sugar-beet root and crown rot. Plant Dis. 78, 685 689.
13. Gaskill, J. O., 1968 : Breeding for Rhizoctonia resistance in sugar beet. J. Am. Soc. Sugar Beet Technol. 15, 107 119.
14. Gidner, S., B. L. Lennefors, N. O. Nilsson, J. Bensefelt, E. Johansson, U. Gyllenspetz T. Kraft, 2005 : QTL mapping of BNYVV resistance from the WB41 source in sugar beet. Genome 48, 279 285.
15. Hecker, R. J. E. G. Ruppel, 1975 : Inheritance of resistance to rhizoctonia root rot in sugarbeet. Crop Sci. 15, 487 490.
16. Hecker, R. J. E. G. Ruppel, 1976 : Polyploid and maternal effects on Rhizoctonia root rot resistance in sugarbeet. Euphytica 25, 419 423.
17. Herr, L. J. D. L. Roberts, 1980 : Characterization of Rhizoctonia populations obtained from sugarbeet fields with differing soil textures. Phytopathology 70, 476 480.
18. Hulbert, S. H., C. A. Webb, S. M. Smith Q. Sun, 2001 : Resistance gene complexes: evolution and utilization. Ann. Rev. Phytopathol. 39, 285 312.
19. Hunger, S., D. G. Gaspero, S. Möhring, D. Bellin, R. Schäfer-Pregl, D. C. Borchardt, C. E. Durel, M. Werber, B. Weisshaar, F. Salamini K. Schneider, 2003 : Isolation and linkage analysis of expressed disease-resistance gene analogues of sugar beet (Beta vulgaris L.). Genome 46, 70 82.
20. Lander, E. S. D. Botstein, 1989 : Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121, 185 199.
21. Lein, J. C., K. Asbach, Y. Tian, D. Schulte, C. Li, G. Koch, C. Jung D. Cai, 2007 : Resistance gene analogues are clustered on chromosome 3 of sugar beet and cosegregate with QTL for rhizomania resistance. Genome 50, 61 71.
22. Leister, D., A. Ballvora, F. Salamini C. Gebhardt, 1996 : A PCR-based approach for isolating pathogen resistance genes from potato with potential for wide application in plants. Nat. Genet. 14, 421 429.
23. Meyers, B. C., A. Kozik, A. Griego, H. H. Kuang R. W. Michelmore, 2003 : Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell 15, 809 834.
24. Michelmore, R. W. B. C. Meyers, 1998 : Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. Genome Res. 8, 1113 1130.
25. Panella, L., 1998 : Screening and utilizing Beta genetic resources with resistance to Rhizoctonia root rot and Cercospora leaf spot in a sugar beet breeding programme. In : L. Frese, L. Panella, H. M. Srivastava W. Lange (eds International Beta Genetic Resources Network, 62 72. IPGRI, Rome.
26. Panella, L., 2005 : Objectives of sugar beet breeding, resistance to parasites, fungi, root rots. In : E. Biancardi, L. G. Campbell, G. N. Skaracis M. De Biaggi (eds Genetics and Breeding of Sugar Beet, 95 100. Science Publishers Inc., Enfield, NH, USA.
27. Pflieger, S., A. Palloix, C. Caranta, A. Blattes V. Lefebvre, 2001 : Defense response genes co-localize with quantitative disease resistance loci in pepper. Theor. Appl. Genet. 103, 920 929.
28. Rae, S. J., C. Aldam, I. Dominguez, M. Hoebrechts, S. R. Barnes K. J. Edwards, 2000 : Development and incorporation of microsatellite markers into the linkage map of sugar beet (Beta vulgaris spp.). Theor. Appl. Genet. 100, 1240 1248.
29. Rudd, S., H. W. Mewes K. F. Mayer, 2003 : Sputnik: a database platform for comparative plant genomics. Nucleic Acids Res. 31, 128 132.
30. Ruppel, E. G., C. L. Schneider, R. J. Hecker G. J. Hogaboam, 1979 : Creating epiphytotics of Rhizoctonia root rot and evaluation for resistance to Rhizoctonia solani in sugar beet field plots. Plant Dis. Rep. 63, 518 522.
31. Saghai-Maroof, M. A., K. M. Soliman, R. A. Jorgensen R. W. Allard, 1984 : Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics. Proc. Natl Acad. Sci. U.S.A. 81, 8014 8018.
32. Samuelian, S., M. Kleine, C. P. Ruyter-Spira, R. M. Klein-Lankhorst C. Jung, 2004 : Cloning and functional analyses of a gene from sugar beet up-regulated upon cyst nematode infection. Plant Mol. Biol. 54, 147 156.
33. Schäfer-Pregl, R., D. C. Borchardt, E. Barzen, C. Glass, W. Mechelke, J. F. Seitzer F. Salamini, 1999 : Localization of QTLs for tolerance to Cercospora beticola on sugar beet linkage groups. Theor. Appl. Genet. 99, 829 836.
34. Schneider, C. L. E. D. Whitney, 1986 : Rhizoctonia root and crown rot. In : C. M. Schneider E. D. Whitney (eds Compendium of Beet Diseases and Insects, 21 pp. American Phytopathological Society, St. Pauls, MN.
35. Schneider, K., R. Schäfer-Pregl, D. C. Borchardt F. Salamini, 2002 : Mapping QTLs for sucrose content, yield and quality in a sugar beet population fingerprinted by EST related markers. Theor. Appl. Genet. 104, 1107 1113.
36. Schneider, K., D. Kulosa, T. R. Soerensen, S. Mohring, M. Heine, G. Durstewitz, A. Polley, E. Weber, H. Jamsari, J. Lein, U. Hohmann, E. Tahiro, B. Weisshaar, B. Schulz, G. Koch, C. Jung M. Ganal, 2007 : Analysis of DNA polymorphisms in sugar beet (Beta vulgaris L.) and development of an SNP-based map of expressed genes. Theor. Appl. Genet. 115, 601 615.
37. Scholten, O. E., L. W. Panella, T. S. M. De Bock W. Lange, 2001 : A greenhouse test for screening sugar beet (Beta vulgaris) for resistance to Rhizoctonia solani. Eur. J. Plant Pathol. 107, 161 166.
38. Schuler, M. A. D. Werck-Reichhart, 2003 : Functional genomics of P450s. Annu. Rev. Plant Biol. 54, 629 667.
39. Schulte, D., D. G. Cai, M. Kleine, L. J. Fan, S. Wang C. Jung, 2006 : A complete physical map of a wild beet (Beta procumbens) translocation in sugar beet. Mol. Genet. Genomics 275, 504 511.
40. Schumacher, K., J. Schondelmaier, E. Barzen, G. Steinrucken, D. Borchardt, W. E. Weber C. J. F. Salamini, 1997 : Combining different linkage maps in sugar beet (Beta vulgaris L.) to make one map. Plant Breeding 116, 23 38.
41. Shen, K. A., B. C. Meyers, M. N. Islam-Faridi, D. B. Chin, D. M. Stelly R. W. Michelmore, 1998 : Resistance gene candidates identified by PCR with degenerate oligonucleotide primers map to clusters of resistance genes in lettuce. Mol. Plant Microbe Interact. 11, 815 823.
42. Tian, Y., L. J. Fan, T. Thurau, C. Jung D. Cai, 2004 : The absence of TIR-type resistance gene analogues in the sugar beet (Beta vulgaris L.) genome. J. Mol. Evol. 58, 40 53.
43. Utz, H. F. A. E. Melchinger, 1996 : PLABQTL: a program for composite interval mapping of QTL. J. Quant. Trait Loci 2, 1 5.
44. Utz, H. F. A. E. Melchinger, 2003 : PLABQTL: A Computer Program to Map QTL. (1.2), 1 33. Institute of Plant Breeding, Seed Science, and Population Genetics, University of Hohenheim, Stuttgart, Germany.
45. Van Loon, L. C. E. A. van Strien, 1999 : The families of pathogenesis-related proteins, their activities, and comparative analysis of PR-1 type proteins. Physiol. Mol. Plant Pathol. 55, 85 97.
46. Van Ooijen, J. W. R. E. Voorrips, 2001 : JoinMap® 3.0, Software for the Calculation of Genetic Linkage Maps. Plant Research International, Wageningen, The Netherlands.
47. Windels, C. E. D. J. Nabben, 1989 : Characterization and pathogenicity of anastomosis groups of Rhizoctonia solani isolated from Beta vulgaris. Phytopathology 79, 83 88.