Large scale expression and purification of recombinant RNA in Escherichia coli

Methods

Volumn 54, Issue 2, 2011, Pages 267-273

  Ponchon, Luc ^a   Dardel, Frédéric ^a  

^a UNIVERSITÉ PARIS DESCARTES   (France)

Author keywords

5S Ribosomal RNA; Aptamer; Expression plasmid; Recombinant RNA; TRNA

Indexed keywords

MALACHITE GREEN; RECOMBINANT DNA; RECOMBINANT RNA; RIBONUCLEASE; RNA 5S; SEPHADEX; STREPTAVIDIN; TRANSFER RNA;

ESCHERICHIA COLI; IN VIVO STUDY; LARGE SCALE PRODUCTION; MATRIX ATTACHMENT REGION; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN EXPRESSION; REVIEW; RNA PROCESSING; RNA PURIFICATION;

CHROMATOGRAPHY, LIQUID; CLONING, MOLECULAR; DNA, RECOMBINANT; ESCHERICHIA COLI; GENETIC VECTORS; PROMOTER REGIONS, GENETIC; RNA; TRANSCRIPTION, GENETIC;

ESCHERICHIA COLI;

EID: 79958728629     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2011.02.007     Document Type: Review

References (50)

1. Itakura K., Hirose T., Crea R., Riggs A.D., Heyneker H.L., Bolivar F., Boyer H.W. Science 1977, 198:1056-1063.
2. Milligan J.F., Groebe D.R., Witherell G.W., Uhlenbeck O.C. Nucleic Acids Res. 1987, 15:8783-8798.
3. Beaucage S.L., Reese C.B. Curr. Protoc. Nucleic Acid Chem. 2009, 11-31. Chapter 2, Unit 2.16.
4. Paul R., Lazarev D., Altman S. Nucleic Acids Res. 2001, 29:880-885.
5. Breaker R.R. Nature 2004, 432:838-845.
6. Roth A., Breaker R.R. Annu. Rev. Biochem. 2009, 78:305-334.
7. Guo P. J. Nanosci. Nanotechnol. 2005, 5:1964-1982.
8. Guo P. Nat. Nanotechnol. 2010, 5:833-842.
9. Yager T.D., von Hippel P.H. Transcript elongation and termination in Escherichia coli. Eschericha coli and Salmonella typhimurium: Cellular and Molecular Biology 1987, 1241-1275. ASM Press, Washington, DC. F.C. Neidhardt, J.L. Ingraham, B. Magasanik, K.B. Low, M. Schaechter (Eds.).
10. Meinnel T., Mechulam Y., Fayat G. Nucleic Acids Res. 1988, 16:8095-8096.
11. Moore P.B., Abo S., Freeborn B., Gewirth D.T., Leontis N.B., Sun G. Meth. Enzymol. 1988, 164:158-174.
12. Perona J.J., Swanson R., Steitz T.A., Söll D. J. Mol. Biol. 1988, 202:121-126.
13. Robertson H.D., Altman S., Smith J.D. J. Biol. Chem. 1972, 247:5243-5251.
14. Li Z., Deutscher M.P. Proc. Natl. Acad. Sci. USA 1995, 92:6883-6886.
15. Li Z., Deutscher M.P. J. Biol. Chem. 1994, 269:6064-6071.
16. Deutscher M.P. Prog. Nucleic Acid Res. Mol. Biol. 1990, 39:209-240.
17. Tisné C., Rigourd M., Marquet R., Ehresmann C., Dardel F. RNA 2000, 6:1403-1412.
18. Wallis N.G., Dardel F., Blanquet S. Biochemistry 1995, 34:7668-7677.
19. Xue H., Shen W., Wong J.T. J. Chromatogr. 1993, 613:247-255.
20. Lazard M., Meinnel T. Biochemistry 1998, 37:6041-6049.
21. Gaudin C., Nonin-Lecomte S., Tisné C., Corvaisier S., Bordeau V., Dardel F., Felden B. J. Mol. Biol. 2003, 331:457-471.
22. Zhang X., Potty A.S.R., Jackson G.W., Stepanov V., Tang A., Liu Y., Kourentzi K., Strych U., Fox G.E., Willson R.C. J. Mol. Recognit. 2009, 22:154-161.
23. Ponchon L., Beauvais G., Nonin-Lecomte S., Dardel F. Nat. Protoc. 2009, 4:947-959.
24. Ponchon L., Dardel F. Nat. Methods 2007, 4:571-576.
25. Bremer H., Dennis P.P. Modulation of chemical composition and other parameters of the cell by growth rate. Eschericha coli and Salmonella typhimurium: Cellular and Molecular Biology 1987, 1527-1542. ASM Press, Washington, DC. F.C. Neidhardt, J.L. Ingraham, B. Magasanik, K.B. Low, M. Schaechter (Eds.).
26. Dennis P.P., Bremer H. J. Bacteriol. 1974, 119:270-281.
27. Nakamura K., Inouye M. Cell 1979, 18:1109-1117.
28. Neidhardt F.C., Fraenkel D. Cold Spring Harb. Symp. Quant. Biol. 1961, 26:63-74.
29. Dong H., Kirsebom L.A., Nilsson L. J. Mol. Biol. 1996, 261:303-308.
30. Grant S.G., Jessee J., Bloom F.R., Hanahan D. Proc. Natl. Acad. Sci. USA 1990, 87:4645-4649.
31. Studier F.W., Rosenberg A.H., Dunn J.J., Dubendorff J.W. Meth. Enzymol. 1990, 185:60-89.
32. Yanisch-Perron C., Vieira J., Messing J. Gene 1985, 33:103-119.
33. D'Souza L.M., Larios-Sanz M., Setterquist R.A., Willson R.C., Fox G.E. Biotechnol. Prog. 2003, 19:734-738.
34. Pitulle C., Dsouza L., Fox G.E. Syst. Appl. Microbiol. 1997, 20:133-136.
35. Srisawat C., Engelke D.R. Methods 2002, 26:156-161.
36. Srisawat C., Goldstein I.J., Engelke D.R. Nucleic Acids Res 2001, 29:E4.
37. Srisawat C., Engelke D.R. RNA 2001, 7:632-641.
38. Lilley D.M.J. RNA 2004, 10:151-158.
39. Grate D., Wilson C. Proc. Natl. Acad. Sci. USA 1999, 96:6131-6136.
40. Baugh C., Grate D., Wilson C. J. Mol. Biol. 2000, 301:117-128.
41. Skripkin E., Paillart J.C., Marquet R., Ehresmann B., Ehresmann C. Proc. Natl. Acad. Sci. USA 1994, 91:4945-4949.
42. Guo P., Zhang C., Chen C., Garver K., Trottier M. Mol. Cell. 1998, 2:149-155.
43. Pickett G.G., Peabody D.S. Nucleic Acids Res. 1993, 21:4621-4626.
44. Normanly J., Masson J.M., Kleina L.G., Abelson J., Miller J.H. Proc. Natl. Acad. Sci. USA 1986, 83:6548-6552.
45. Zuker M. Nucleic Acids Res. 2003, 31:3406-3415.
46. Zubay G. J. Mol. Biol. 1962, 4:347-356.
47. Nonin-Lecomte S., Germain-Amiot N., Gillet R., Hallier M., Ponchon L., Dardel F., Felden B. EMBO Rep. 2009, 10:160-165.
48. Nassal M. Virus Res. 2008, 134:235-249.
49. Zimmermann T.S., Lee A.C.H., Akinc A., Bramlage B., Bumcrot D., Fedoruk M.N., Harborth J., Heyes J.A., Jeffs L.B., John M., Judge A.D., Lam K., McClintock K., Nechev L.V., Palmer L.R., Racie T., Röhl I., Seiffert S., Shanmugam S., Sood V., Soutschek J., Toudjarska I., Wheat A.J., Yaworski E., Zedalis W., Koteliansky V., Manoharan M., Vornlocher H.-P., MacLachlan I. Nature 2006, 441:111-114.
50. Guo S., Tschammer N., Mohammed S., Guo P. Hum. Gene Ther. 2005, 16:1097-1109.