Molecular basis of seed lipoxygenase null traits in soybean line OX948

Theoretical and Applied Genetics

Volumn 122, Issue 7, 2011, Pages 1247-1264

  Reinprecht, Yarmilla ^a   Luk Labey, Shun Yan ^a   Yu, Kangfu ^b   Poysa, Vaino W ^b   Rajcan, Istvan ^a   Ablett, Gary R ^a   Peter Pauls, K ^a  

^a UNIVERSITY OF GUELPH   (Canada)

^b AGRICULTURE AND AGRI FOOD CANADA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ENZYMATIC ACTIVITIES; IRON BINDING; LIPOXYGENASE-1; LIPOXYGENASES; MOLECULAR BASIS; MOLECULAR MARKER; NULL MUTANT; OFF-FLAVORS; POOR STABILITY; PROMOTER REGION; SOYBEAN OIL; SOYBEAN SEEDS;

AMINO ACIDS; GENES;

SEED;

GLUTAMINE; HISTIDINE; LIPOXYGENASE; LIPOXYGENASE III; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; BREEDING; CHEMISTRY; DNA SEQUENCE; ENZYMOLOGY; GENETIC VARIABILITY; GENETICS; METABOLISM; MOLECULAR GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; PLANT GENE; PLANT SEED; POLYACRYLAMIDE GEL ELECTROPHORESIS; SOYBEAN;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; BASE SEQUENCE; BREEDING; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GENES, PLANT; GENETIC STRUCTURES; GLUTAMINE; HISTIDINE; LIPOXYGENASE; MOLECULAR SEQUENCE DATA; MUTATION; PLANT PROTEINS; SEEDS; SEQUENCE ANALYSIS, DNA; SOYBEANS;

GLYCINE MAX;

EID: 79958708397     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-011-1528-5     Document Type: Article

References (43)

1. Axelrod B, Cheesbrough TM, Laakso S (1981) Lipoxygenase from soybean. Methods Enzymol 71:441-451
2. Bruggemann E, Handwerger K, Essex C, Storz G (1996) Analysis of fast neutron-generated mutants at the Arabidopsis thaliana HY4 locus. Plant J 10:755-760
3. Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DJ, Thompson JD (2003) Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res 31:3497-3500
4. Chopra VL (2005) Mutagenesis: investigating the process and processing the outcome for crop improvement. Curr Sci 89:353-359
5. Davies CS, Nielsen NC (1986) Genetic analysis of a null-allele for lipoxygenase-2 in soybean. Crop Sci 26:460-463
6. Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12:13-15
7. Feussner I, Wasternack C (2002) The lipoxygenase pathway. Annu Rev Plant Biol 53:275-297
8. Grant D, Nelson RT, Cannon SB, Shoemaker RC (2010) SoyBase, the USDA-ARS soybean genetics and genomics database. Nucleic Acids Res 38:D843-D846. http://www.soybase.org/
9. Kim MY, Ha B-K, Jun T-H, Hwang E-Y, Van K, Kuk YI, Lee S-H (2004) Single nucleotide polymorphism discovery and linkage mapping of lipoxygenase -2 (Lx2) in soybean. Euphytica 135:169-177
10. Hajika M, Igita K, Kitamura K (1991) A line lacking all the seed lipoxygenase isozymes in soybean [Glycine max (L.) Merrill] induced by gamma-ray irradiation. Jpn J Breed 41:507-509
11. Hildebrand DF, Hymowitz T (1981) Two soybean genotypes lacking lipoxygenase-1. J Am Oil Chem Soc 58:583-586
12. Kieber JJ, Rothenberg M, Roman G, Feldmann KA, Ecker JR (1993) CTR1, a negative regulator of the ethylene response pathway in Arabidopsis, encodes a member of the Raf family of protein kinases. Cell 72:427-441
13. King JM, Svendsen LK, Fehr WR, Narvel JM, White PJ (1998) Oxidative and flavor stability of oil from lipoxygenase-free soybeans. J Am Oil Chem Soc 75:1121-1126
14. Kitamura K (1984) Biochemical characterization of lipoxygenase lacking mutants, L-1-less, L-2-less, and L-3-less soybeans. Agric Biol Chem 48:2339-2346
15. Kitamura K, Davies CS, Kaizuma N, Nielsen NC (1983) Genetic analysis of a null-allele for lipoxygenase-3 in soybean seeds. Crop Sci 23:924-927
16. Kitamura K, Kumagai T, Kikuchi A (1985) Inheritance of lipoxygenase-2 and genetic relationships among genes for lipoxygenase-1, -2 and -3 isozymes in soybean seeds. Jpn J Breed 35:413-420
17. Kosambi DD (1944) The estimation of map distances from recombination values. Ann EuGenet 12:172-175
18. Kramer JA, Johnson KR, Dunham WR, Sands RH, Funk MO Jr (1994) Position 713 is critical for catalysis but not iron binding in soybean lipoxygenase 3. Biochemistry 33:15017-15022
19. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary linkage maps of experimental and natural populations. Genomics 1:174-181
20. Lenis JM, Gillman JD, Lee JD, Shannon JG, Bilyeu KD (2010) Soybean seed lipoxygenase genes: molecular characterization and development of molecular marker assays. Theor App Genet 120:1139-1149
21. Luk, S-Y (2006) Developing low linolenic acid lipoxygenase-free soybean lines for improved soymilk stability and flavour. M.Sc. Dissertation, University of Guelph
22. Matsukura C, Yamaguchi I, Inamura M, Ban Y, Kobayashi Y, Yin Y, Saito T, Kuwata C, Imanishi S, Nishimura S (2007) Generation of gamma irradiation-induced mutant lines of the miniature tomato (Solanum lycopersicum L.) cultivar Micro-Tom. Plant Biotechnol 24:39-44
23. Minor W, Steczko J, Bollin JT, Otwinowski Z, Axelrod B (1993) Crystallographic determination of the active site iron and its ligands in soybean lipoxygenase L-1. Biochemistry 32:6320-6323
24. Minor W, Steczko J, Stec B, Otwinowski Z, Bolin JT, Walter R, Axelrod B (1996) Crystal structure of soybean lipoxygenase L-1 at 1.4 D resolution. Biochemistry 35:10688-10701
25. Nambara E, Keith K, McCourt P, Naito S (1994) Isolation of an internal deletion mutant of the Arabidopsis thaliana ABI3 gene. Plant Cell Physiol 35:509-513
26. Rackis JJ, Sessa DJ, Honig DH (1979) Flavor problems of vegetable food proteins. J Am Oil Chem Soc 56:262-271
27. Reinprecht Y (2002) Investigation of genetic and molecular basis of low linolenic acid, lipoxygenase-free soybean [Glycine max (L.) Merrill]. PhD dissertation, University of Guelph
28. Reinprecht Y, Rajcan I, Poysa VW, Ablett GR, Pauls KP (2005) Relationships and inheritance of linolenic acid and seed lipoxygenases in soybean crosses designed to combine these traits. Can J Plant Sci 85:593-602
29. Reinprecht Y, Poysa VW, Yu K, Rajcan I, Ablett GR, Pauls KP (2006) Seed and agronomic QTL in low linolenic acid, lipoxygenase-free soybean [Glycine max (L.) Merrill] germplasm. Genome 49:1510-1527
30. Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology, Humana Press, Totowa, pp 365-386. http://www.primer3.sourceforge.net/
31. Salamov A, Solovyev V (2000) Ab initio gene finding in Drosophila genomic DNA. Genome Res 10:516-522
32. Sangsiri C, Sorajjapinin W, Srinives P (2005) Gamma radiation induced mutations in mungbean. Sci Asia 31:251-255
33. Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai Y, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang X-C, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht S, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA (2010) Genome sequence of the palaeopolyploid soybean. Nature 463:178-183
34. Shen N, Fehr W, Johnson L, White P (1996) Oxidative stabilities of soybean oils that lack lipoxygenases. J Am Oil Chem Soc 73:1327-1336
35. Shibata D, Steczko J, Dixon JE, Hermodson M, Yazdanparast R, Axelrod B (1987) Primary structure of soybean lipoxygenase-1. J Biol Chem 262:10080-10085
36. Shibata D, Stecsko J, Dixon JE, Andrews PC, Hermodson M, Axelrod B (1988) Primary structure of soybean lipoxygenase L-2. J Biol Chem 263:6816-6821
37. Shikazono N, Yokota Y, Tanaka A, Watanabe H, Tano S (1998) Molecular analysis of carbon ion-induced mutations in Arabidopsis thaliana. Genes Genetic Syst 73:173-179
38. Shikazono N, Tanaka A, Watanabe H, Tano S (2001) Rearrangements of the DNA in carbon ion-induced mutants of Arabidopsis thaliana. Genetics 157:379-387
39. Shin JH, Kim D, Kim KD, Van K, Kim MY, Lee S-H (2007) Sequence level analysis of the lipoxygenase gene family in soybean. http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&id=161318152 Accessed 19 December 2008
40. Shin JH, Van K, Kim DH, Kim KD, Jang YE, Choi B-S, Kim MY, Lee S-H (2008) The lipoxygenase gene family: a genomic fossil of shared polyploidy between Glycine max and Medicago truncatula. BMC Plant Biol 8:133. doi:10.1186/1471-2229-8-133
41. Shoemaker RC, Schlueter JA, Jackson SA (2008) Soybean genome structure and organization. In: Stacey G (ed) Genetics and genomics of soybean. Springer Science? Business Media, LLC, USA, pp 91-99
42. Siedow JN (1991) Plant lipoxygenase: structure and function. Annu Rev Plant Physiol Plant Mol Biol 42:145-188
43. Song I-J, Kang H, Kang J-Y, Kim H-D, Bae T-W, Kang S-Y, Lim P-O, Adachi T, Lee H-Y (2009) Breeding of four-leaf white clover (Trifolium repens L.) through 60Co gamma-ray irradiation. Plant Biotechnol Rep. doi:10.1007/s11816-009-0091-x