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Volumn 77, Issue 11, 2011, Pages 3898-3902

Quantification of Propionibacterium acidipropionici P169 bacteria in environmental samples by use of strain-specific primers derived by suppressive subtractive hybridization

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL STRAINS; ENVIRONMENTAL SAMPLE; MOLECULAR MARKER; PROPIONIBACTERIUM; QUANTITATIVE PCR; RUMEN FLUIDS; SUPPRESSIVE SUBTRACTIVE HYBRIDIZATIONS;

EID: 79958287038     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02586-10     Document Type: Article
Times cited : (18)

References (30)
  • 1
    • 0032573069 scopus 로고    scopus 로고
    • PCR-based subtractive hybridization and differences in gene content among strains of Helicobacter pylori
    • Akopyants, N., et al. 1998. PCR-based subtractive hybridization and differences in gene content among strains of Helicobacter pylori. Proc. Natl. Acad. Sci. U. S. A. 95:13108-13113.
    • (1998) Proc. Natl. Acad. Sci. U. S. A. , vol.95 , pp. 13108-13113
    • Akopyants, N.1
  • 4
    • 0038777403 scopus 로고    scopus 로고
    • Specific identification of certain probiotic Lactobacillus rhamnosus strains with PCR primers based on phagerelated sequences
    • Brandt, K., and T. Alatossava. 2003. Specific identification of certain probiotic Lactobacillus rhamnosus strains with PCR primers based on phagerelated sequences. Int. J. Food Microbiol. 84:189-196.
    • (2003) Int. J. Food Microbiol. , vol.84 , pp. 189-196
    • Brandt, K.1    Alatossava, T.2
  • 5
    • 28344434302 scopus 로고    scopus 로고
    • Data analysis and interpretation
    • S. A. Bustin (ed.), International University Line, La Jolla, CA
    • Bustin, S. A., and T. Nolan. 2004. Data analysis and interpretation, p. 439-492. In S. A. Bustin (ed.), A-Z of quantitative PCR. International University Line, a Jolla, CA.
    • (2004) A-Z of quantitative PCR , pp. 439-492
    • Bustin, S.A.1    Nolan, T.2
  • 6
    • 43049140781 scopus 로고    scopus 로고
    • Taxonomic and strain-specific identification of the probiotic strain Lactobacillus rhamnosus 35 within the Lactobacillus casei group
    • Coudeyras, S., H. Marchandin, C. Fajon, and C. Forestier. 2008. Taxonomic and strain-specific identification of the probiotic strain Lactobacillus rhamnosus 35 within the Lactobacillus casei group. Appl. Environ. Microbiol. 74:2679-2689.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 2679-2689
    • Coudeyras, S.1    Marchandin, H.2    Fajon, C.3    Forestier, C.4
  • 7
    • 38849143916 scopus 로고    scopus 로고
    • Genome comparison of Bifidobacterium longum strains NCC2705 and CRC-002 using suppression subtractive hybridization
    • Delcenserie, V., M. Lessard, G. LaPointe, and D. Roy. 2008. Genome comparison of Bifidobacterium longum strains NCC2705 and CRC-002 using suppression subtractive hybridization. FEMS Microbiol. Lett. 280:50-56.
    • (2008) FEMS Microbiol. Lett. , vol.280 , pp. 50-56
    • Delcenserie, V.1    Lessard, M.2    LaPointe, G.3    Roy, D.4
  • 8
    • 29044443396 scopus 로고    scopus 로고
    • Enumeration of specific bacterial populations in complex intestinal communities using quantitative PCR based on the chaperonin-60 target
    • Dumonceaux, T., et al. 2006. Enumeration of specific bacterial populations in complex intestinal communities using quantitative PCR based on the chaperonin-60 target. J. Microbiol. Methods 60:46-62.
    • (2006) J. Microbiol. Methods , vol.60 , pp. 46-62
    • Dumonceaux, T.1
  • 9
    • 0036654884 scopus 로고    scopus 로고
    • Propionibacteria fed to dairy cows: effects on energy balance, plasma metabolites and hormones, and reproduction
    • Francisco, C., C. Chamberlain, D. Waldner, R. Wettemann, and L. Spicer. 2002. Propionibacteria fed to dairy cows: effects on energy balance, plasma metabolites and hormones, and reproduction. J. Dairy Sci. 85:1738-1751.
    • (2002) J. Dairy Sci. , vol.85 , pp. 1738-1751
    • Francisco, C.1    Chamberlain, C.2    Waldner, D.3    Wettemann, R.4    Spicer, L.5
  • 10
    • 47949116821 scopus 로고    scopus 로고
    • Identification and quantification of Lactobacillus casei strain Shirota in human feces with strain-specific primers derived from randomly amplified polymorphic DNA
    • Fujimoto, J., T. Matsuki, M. Sasamoto, Y. Tomii, and K. Watanabe. 2008. Identification and quantification of Lactobacillus casei strain Shirota in human feces with strain-specific primers derived from randomly amplified polymorphic DNA. Int. J. Food Microbiol. 126:210-215.
    • (2008) Int. J. Food Microbiol. , vol.126 , pp. 210-215
    • Fujimoto, J.1    Matsuki, T.2    Sasamoto, M.3    Tomii, Y.4    Watanabe, K.5
  • 11
    • 0015303141 scopus 로고
    • Cell wall composition and deoxyribonucleic acid similarities among the anaerobic coryneforms, classical propionibacteria, and strains of Arachnia propionica
    • Johnson, J., and C. Cummins. 1972. Cell wall composition and deoxyribonucleic acid similarities among the anaerobic coryneforms, classical propionibacteria, and strains of Arachnia propionica. J. Bacteriol. 109:1047-1066.
    • (1972) J. Bacteriol. , vol.109 , pp. 1047-1066
    • Johnson, J.1    Cummins, C.2
  • 12
    • 33847272505 scopus 로고    scopus 로고
    • Estimating amplification efficiency improves multiplex real-time PCR quantification of Bacillus licheniformis and Bacillus subtilis spores in animal feed
    • Jørgensen, C., and T. Leser. 2007. Estimating amplification efficiency improves multiplex real-time PCR quantification of Bacillus licheniformis and Bacillus subtilis spores in animal feed. J. Microbiol. Methods 68:588-595.
    • (2007) J. Microbiol. Methods , vol.68 , pp. 588-595
    • Jørgensen, C.1    Leser, T.2
  • 13
    • 40649124585 scopus 로고    scopus 로고
    • Effects of feeding yeast and propionibacteria to dairy cows on milk yield and components, and reproduction
    • Lehloenya, K., et al. 2008. Effects of feeding yeast and propionibacteria to dairy cows on milk yield and components, and reproduction. J. Anim. Physiol. Anim. Nutr. (Berl.) 92:190-202.
    • (2008) J. Anim. Physiol. Anim. Nutr. (Berl.) , vol.92 , pp. 190-202
    • Lehloenya, K.1
  • 14
    • 0035956977 scopus 로고    scopus 로고
    • Comparative genomics of the restriction-modification systems in Helicobacter pylori
    • Lin, L., J. Posfai, R. Roberts, and H. Kong. 2001. Comparative genomics of the restriction-modification systems in Helicobacter pylori. Proc. Natl. Acad. Sci. U. S. A. 98:2740-2745.
    • (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , pp. 2740-2745
    • Lin, L.1    Posfai, J.2    Roberts, R.3    Kong, H.4
  • 15
    • 33748790370 scopus 로고    scopus 로고
    • Rapid quantitative detection of Lactobacillus sakei in meat and fermented sausages by real-time PCR
    • Martín, B., A. Jofré, M. Garriga, M. Pla, and T. Aymerich. 2006. Rapid quantitative detection of Lactobacillus sakei in meat and fermented sausages by real-time PCR. Appl. Environ. Microbiol. 72:6040-6048.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 6040-6048
    • Martín, B.1    Jofré, A.2    Garriga, M.3    Pla, M.4    Aymerich, T.5
  • 16
    • 33745859040 scopus 로고    scopus 로고
    • Monitoring the cell number of Lactococcus lactis subsp. cremoris FC in human feces by real-time PCR with strain-specific primers designed using the RAPD technique
    • Maruo, T., M. Sakamoto, T. Toda, and Y. Benno. 2006. Monitoring the cell number of Lactococcus lactis subsp. cremoris FC in human feces by real-time PCR with strain-specific primers designed using the RAPD technique. Int. J. Food Microbiol. 110:69-76.
    • (2006) Int. J. Food Microbiol. , vol.110 , pp. 69-76
    • Maruo, T.1    Sakamoto, M.2    Toda, T.3    Benno, Y.4
  • 17
    • 34548496482 scopus 로고    scopus 로고
    • Quantification of 2,4-diacetylphloroglucinol-producing Pseudomonas fluorescens strains in the plant rhizosphere by real-time PCR
    • Mavrodi, O., D. Mavrodi, L. Thomashow, and D. Weller. 2007. Quantification of 2,4-diacetylphloroglucinol-producing Pseudomonas fluorescens strains in the plant rhizosphere by real-time PCR. Appl. Environ. Microbiol. 73: 5531-5538.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5531-5538
    • Mavrodi, O.1    Mavrodi, D.2    Thomashow, L.3    Weller, D.4
  • 18
    • 0036335361 scopus 로고    scopus 로고
    • Suppressive subtractive hybridization detects extensive genomic diversity in Thermotoga maritima
    • Nesbø, C., K. Nelson, and W. Doolittle. 2002. Suppressive subtractive hybridization detects extensive genomic diversity in Thermotoga maritima. J. Bacteriol. 184:4475-4488.
    • (2002) J. Bacteriol. , vol.184 , pp. 4475-4488
    • Nesbø, C.1    Nelson, K.2    Doolittle, W.3
  • 19
    • 0037735236 scopus 로고    scopus 로고
    • Splanchnic metabolism of dairy cows during the transition from late gestation through early lactation
    • Reynolds, C., P. Aikman, B. Lupoli, D. Humphries, and D. Beever. 2003. Splanchnic metabolism of dairy cows during the transition from late gestation through early lactation. J. Dairy Sci. 86:1201-1217.
    • (2003) J. Dairy Sci. , vol.86 , pp. 1201-1217
    • Reynolds, C.1    Aikman, P.2    Lupoli, B.3    Humphries, D.4    Beever, D.5
  • 20
    • 3042742568 scopus 로고    scopus 로고
    • PCR detection and 16S rRNA sequence-based phylogeny of a novel Propionibacterium acidipropionici applicable for enhanced fermentation of high moisture corn
    • Romanov, M., R. Bato, M. Yokoyama, and S. Rust. 2004. PCR detection and 16S rRNA sequence-based phylogeny of a novel Propionibacterium acidipropionici applicable for enhanced fermentation of high moisture corn. J. Appl. Microbiol. 97:38-47.
    • (2004) J. Appl. Microbiol. , vol.97 , pp. 38-47
    • Romanov, M.1    Bato, R.2    Yokoyama, M.3    Rust, S.4
  • 21
    • 0030944527 scopus 로고    scopus 로고
    • 16S-23S ribosomal spacer polymorphism in dairy propionibacteria
    • Rossi, F., M. Sammartino, and S. Torriani. 1997. 16S-23S ribosomal spacer polymorphism in dairy propionibacteria. Biotechnol. Tech. 11:159-161.
    • (1997) Biotechnol. Tech. , vol.11 , pp. 159-161
    • Rossi, F.1    Sammartino, M.2    Torriani, S.3
  • 22
    • 0032876355 scopus 로고    scopus 로고
    • Genus- and species-specific PCR-based detection of dairy propionibacteria in environmental samples by using primers targeted to the genes encoding 16S rRNA
    • Rossi, F., S. Torriani, and F. Dellaglio. 1999. Genus- and species-specific PCR-based detection of dairy propionibacteria in environmental samples by using primers targeted to the genes encoding 16S rRNA. Appl. Environ. Microbiol. 65:4241-4244.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4241-4244
    • Rossi, F.1    Torriani, S.2    Dellaglio, F.3
  • 23
    • 0033837548 scopus 로고    scopus 로고
    • Identification and characterization of nuclease activities in anaerobic environmental samples
    • Ruiz, T. R., S. Andrews, and G. B. Smith. 2000. Identification and characterization of nuclease activities in anaerobic environmental samples. Can. J. Microbiol. 46:736-740.
    • (2000) Can. J. Microbiol. , vol.46 , pp. 736-740
    • Ruiz, T.R.1    Andrews, S.2    Smith, G.B.3
  • 24
    • 30844473968 scopus 로고    scopus 로고
    • Effects of feeding propionibacteria to dairy cows on milk yield, milk components, and reproduction
    • Stein, D., et al. 2006. Effects of feeding propionibacteria to dairy cows on milk yield, milk components, and reproduction. J. Dairy Sci. 89:111-125.
    • (2006) J. Dairy Sci. , vol.89 , pp. 111-125
    • Stein, D.1
  • 25
    • 0035882419 scopus 로고    scopus 로고
    • Characterization of the 16S-23S and 23S-5S rRNA intergenic spacer regions of dairy propionibacteria and their identification with species-specific primers by PCR
    • Tilsala-Timisjärvi, A., and T. Alatossava. 2001. Characterization of the 16S-23S and 23S-5S rRNA intergenic spacer regions of dairy propionibacteria and their identification with species-specific primers by PCR. Int. J. Food Microbiol. 68:45-52.
    • (2001) Int. J. Food Microbiol. , vol.68 , pp. 45-52
    • Tilsala-Timisjärvi, A.1    Alatossava, T.2
  • 26
    • 0031764372 scopus 로고    scopus 로고
    • Strain-specific identification of probiotic Lactobacillus rhamnosus with randomly amplified polymorphic DNA-derived PCR primers
    • Tilsala-Timisjärvi, A., and T. Alatossava. 1998. Strain-specific identification of probiotic Lactobacillus rhamnosus with randomly amplified polymorphic DNA-derived PCR primers. Appl. Environ. Microbiol. 64:4816-4819.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4816-4819
    • Tilsala-Timisjärvi, A.1    Alatossava, T.2
  • 27
    • 0038013917 scopus 로고    scopus 로고
    • Quantitative detection of probiotic Bifidobacterium strains in bacterial mixtures by using real-time PCR
    • Vitali, B., M. Candela, D. Matteuzzi, and P. Brigidi. 2003. Quantitative detection of probiotic Bifidobacterium strains in bacterial mixtures by using real-time PCR. Syst. Appl. Microbiol. 26:269-276.
    • (2003) Syst. Appl. Microbiol. , vol.26 , pp. 269-276
    • Vitali, B.1    Candela, M.2    Matteuzzi, D.3    Brigidi, P.4
  • 28
    • 51649095332 scopus 로고    scopus 로고
    • Identification and analysis of four candidate symbiosis genes from 'Chlorochromatium aggregatum,' a highly developed bacterial symbiosis
    • Vogl, K., et al. 2008. Identification and analysis of four candidate symbiosis genes from 'Chlorochromatium aggregatum,' a highly developed bacterial symbiosis. Environ. Microbiol. 10:2842-2856.
    • (2008) Environ. Microbiol. , vol.10 , pp. 2842-2856
    • Vogl, K.1
  • 29
    • 39049146690 scopus 로고    scopus 로고
    • Effect of feeding propionibacteria on milk production by early lactation dairy cows
    • Weiss, W., D. Wyatt, and T. McKelvey. 2008. Effect of feeding propionibacteria on milk production by early lactation dairy cows. J. Dairy Sci. 91:646-52.
    • (2008) J. Dairy Sci. , vol.91 , pp. 646-652
    • Weiss, W.1    Wyatt, D.2    McKelvey, T.3
  • 30
    • 0026338873 scopus 로고
    • Restriction and modification systems
    • Wilson, G., and N. Murray. 1991. Restriction and modification systems. Annu. Rev. Genet. 25:585-627.
    • (1991) Annu. Rev. Genet. , vol.25 , pp. 585-627
    • Wilson, G.1    Murray, N.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.