Global analysis of gene expression in mineralizing fish vertebra-derived cell lines: New insights into anti-mineralogenic effect of vanadate

BMC Genomics

Volumn 12, Issue , 2011, Pages

  Tiago, Daniel M ^a   Laizé, Vincent ^a   Bargelloni, Luca ^b   Ferraresso, Serena ^b   Romualdi, Chiara ^b   Cancela, M L ^a  

^a UNIVERSITY OF ALGARVE   (Portugal)

^b UNIVERSITY OF PADOVA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

VANADIC ACID; ASCORBIC ACID; CALCIUM; PHOSPHATE;

AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; BONE MINERALIZATION; CALCIUM BINDING; CARTILAGE CELL; CELL DIFFERENTIATION; CELL LINE; CELL PROLIFERATION; CELL TYPE; CONTROLLED STUDY; DEVELOPMENTAL GENE; FISH; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE FUNCTION; GENE IDENTIFICATION; IN VITRO STUDY; METABOLIC REGULATION; MINERALOGEMIC GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; OSTEOBLAST; SIGNAL TRANSDUCTION; UPREGULATION; ANIMAL; COMPARATIVE STUDY; CYTOLOGY; DNA MICROARRAY; GENETICS; METABOLISM; SPINE;

ANIMALIA; MAMMALIA; SPARUS AURATA; TELEOSTEI; VERTEBRATA;

ANIMALS; ASCORBIC ACID; CALCIUM; CELL LINE; FISHES; GENE EXPRESSION REGULATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHOSPHATES; SPINE; VANADATES;

EID: 79958271271     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-310     Document Type: Article

References (45)

1. Karsenty G, Wagner EF. Reaching a genetic and molecular understanding of skeletal development. Dev Cell 2002, 2(4):389-406. 10.1016/S1534-5807(02)00157-0, 11970890.
2. Blair HC, Zaidi M, Schlesinger PH. Mechanisms balancing skeletal matrix synthesis and degradation. Biochem J 2002, 364(Pt 2):329-341. 1222578, 12023876.
3. McGonnell IM, Fowkes RC. Fishing for gene function-endocrine modelling in the zebrafish. J Endocrinol 2006, 189(3):425-439. 10.1677/joe.1.06683, 16731775.
4. Fisher S, Jagadeeswaran P, Halpern ME. Radiographic analysis of zebrafish skeletal defects. Dev Biol 2003, 264(1):64-76. 10.1016/S0012-1606(03)00399-3, 14623232.
5. Belloni E, Muenke M, Roessler E, Traverso G, Siegel-Bartelt J, Frumkin A, Mitchell HF, Donis-Keller H, Helms C, Hing AV, Heng HH, Koop B, Martindale D, Rommens JM, Tsui LC, Scherer SW. Identification of Sonic hedgehog as a candidate gene responsible for holoprosencephaly. Nat Genet 1996, 14(3):353-356. 10.1038/ng1196-353, 8896571.
6. Nissen RM, Amsterdam A, Hopkins N. A zebrafish screen for craniofacial mutants identifies wdr68 as a highly conserved gene required for endothelin-1 expression. BMC Dev Biol 2006, 6:28. 10.1186/1471-213X-6-28, 1523201, 16759393.
7. Gorman KF, Breden F. Teleosts as models for human vertebral stability and deformity. Comp Biochem Physiol C Toxicol Pharmacol 2007, 145(1):28-38. 10.1016/j.cbpc.2006.10.004, 17240199.
8. Canario AVM, Bargelloni L, Volckaert F, Houston RD, Massault C, Guiguen Y. Genomics Toolbox for Farmed Fish. Rev Fish Sci 2008, 16:3-15.
9. Adzhubei AA, Vlasova AV, Hagen-Larsen H, Ruden TA, Laerdahl JK, Hoyheim B. Annotated expressed sequence tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource. BMC Genomics 2007, 8:209. 10.1186/1471-2164-8-209, 1913521, 17605782.
10. Govoroun M, Le Gac F, Guiguen Y. Generation of a large scale repertoire of Expressed Sequence Tags (ESTs) from normalised rainbow trout cDNA libraries. BMC Genomics 2006, 7:196. 10.1186/1471-2164-7-196, 1564016, 16887034.
11. Douglas SE, Knickle LC, Kimball J, Reith ME. Comprehensive EST analysis of Atlantic halibut (Hippoglossus hippoglossus), a commercially relevant aquaculture species. BMC Genomics 2007, 8:144. 10.1186/1471-2164-8-144, 1924502, 17547761.
12. Li P, Peatman E, Wang S, Feng J, He C, Baoprasertkul P, Xu P, Kucuktas H, Nandi S, Somridhivej B, Serapion J, Simmons M, Turan C, Liu L, Muir W, Dunham R, Brady Y, Grizzle J, Liu Z. Towards the ictalurid catfish transcriptome: generation and analysis of 31,215 catfish ESTs. BMC Genomics 2007, 8:177. 10.1186/1471-2164-8-177, 1906771, 17577415.
13. Li RW, Waldbieser GC. Production and utilization of a high-density oligonucleotide microarray in channel catfish, Ictalurus punctatus. BMC Genomics 2006, 7:134. 10.1186/1471-2164-7-134, 1501020, 16740160.
14. Douglas SE, Knickle LC, Williams J, Flight RM, Reith ME. A first generation Atlantic halibut Hippoglossus hippoglossus (L.) microarray: application to developmental studies. J Fish Biol 2008, 72:2391-2406.
15. Garcia-Reyero N, Griffitt RJ, Liu L, Kroll KJ, Farmerie WG, Barber DS, Denslow ND. Construction of a robust microarray from a non-model species largemouth bass, Micropterus salmoides (Lacepede), using pyrosequencing technology. J Fish Biol 2008, 72(9):2354-2376. 10.1111/j.1095-8649.2008.01904.x, 2779536, 19936325.
16. Salem M, Kenney PB, Rexroad CE, Yao J. Development of a 37 k high-density oligonucleotide microarray: a new tool for functional genome research in rainbow trout. J Fish Biol 2008, 72(9):2187-2206.
17. Ferraresso S, Vitulo N, Mininni AN, Romualdi C, Cardazzo B, Negrisolo E, Reinhardt R, Canario AV, Patarnello T, Bargelloni L. Development and validation of a gene expression oligo microarray for the gilthead sea bream (Sparus aurata). BMC Genomics 2008, 9(1):580. 10.1186/1471-2164-9-580, 2648989, 19055773.
18. Rafael MS, Marques CL, Parameswaran V, Cancela ML, Laizé V. Fish bone-derived cell lines: an alternative in vitro cell system to study bone biology. J Appl Ichthyol 2010, 26(2):230-234.
19. Pombinho AR, Laizé V, Molha DM, Marques SM, Cancela ML. Development of two bone-derived cell lines from the marine teleost Sparus aurata; evidence for extracellular matrix mineralization and cell-type-specific expression of matrix Gla protein and osteocalcin. Cell Tissue Res 2004, 315(3):393-406. 10.1007/s00441-003-0830-1, 14762709.
20. Fonseca VG, Laizé V, Valente MS, Cancela ML. Identification of an osteopontin-like protein in fish associated with mineral formation. FEBS J 2007, 274(17):4428-4439. 10.1111/j.1742-4658.2007.05972.x, 17680811.
21. Rafael MS, Laizé V, Cancela ML. Identification of Sparus aurata bone morphogenetic protein 2: molecular cloning, gene expression and in silico analysis of protein conserved features in vertebrates. Bone 2006, 39(6):1373-1381. 10.1016/j.bone.2006.06.021, 16919510.
22. Laizé V, Tiago DM, Aureliano M, Cancela ML. New insights into mineralogenic effects of vanadate. Cell Mol Life Sci 2009, 66(24):3831-3836. 10.1007/s00018-009-0137-9, 19760363.
23. Tiago DM, Cancela ML, Aureliano M, Laizé V. Vanadate proliferative and anti-mineralogenic effects are mediated by MAPK and PI-3K/Ras/Erk pathways in a fish chondrocyte cell line. FEBS Lett 2008, 582(9):1381-1385. 10.1016/j.febslet.2008.03.025, 18371308.
24. AmiGO database. , http://amigo.geneontology.org/cgi-bin/amigo/go.cgi
25. Sparus aurata database. , http://enne.cribi.unipd.it:5555/biomart/martview
26. DAVID database. , http://david.abcc.ncifcrf.gov/
27. Huang da W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009, 4(1):44-57.
28. Tiago DM, Laizé V, Cancela ML, Aureliano M. Impairment of mineralization by metavanadate and decavanadate solutions in a fish bone-derived cell line. Cell Biol Toxicol 2008, 24(3):253-263. 10.1007/s10565-007-9034-x, 17899405.
29. Wang Y, Barbacioru C, Hyland F, Xiao W, Hunkapiller KL, Blake J, Chan F, Gonzalez C, Zhang L, Samaha RR. Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays. BMC Genomics 2006, 7:59. 10.1186/1471-2164-7-59, 1435885, 16551369.
30. James CG, Appleton CT, Ulici V, Underhill TM, Beier F. Microarray analyses of gene expression during chondrocyte differentiation identifies novel regulators of hypertrophy. Mol Biol Cell 2005, 16(11):5316-5333. 10.1091/mbc.E05-01-0084, 1266429, 16135533.
31. Billiard J, Moran RA, Whitley MZ, Chatterjee-Kishore M, Gillis K, Brown EL, Komm BS, Bodine PV. Transcriptional profiling of human osteoblast differentiation. J Cell Biochem 2003, 89(2):389-400. 10.1002/jcb.10514, 12704802.
32. Doi M, Nagano A, Nakamura Y. Genome-wide screening by cDNA microarray of genes associated with matrix mineralization by human mesenchymal stem cells in vitro. Biochem Biophys Res Commun 2002, 290(1):381-390. 10.1006/bbrc.2001.6196, 11779180.
33. Raouf A, Seth A. Discovery of osteoblast-associated genes using cDNA microarrays. Bone 2002, 30(3):463-471. 10.1016/S8756-3282(01)00699-8, 11882459.
34. Barrio DA, Etcheverry SB. Vanadium and bone development: putative signaling pathways. Can J Physiol Pharmacol 2006, 84(7):677-686. 10.1139/y06-022, 16998531.
35. Schechter Y. Insulin-like effects of vanadium: mechanisms of action, clinical and basic implications. Lett Pept Sci 1998, 5:319-322.
36. Anke M. Vanadium - an element both essential and toxic to plants, animals and humans?. Anal Real Acad Nac Farm 2004, 70:961-999.
37. Alford AI, Hankenson KD. Matricellular proteins: Extracellular modulators of bone development, remodeling, and regeneration. Bone 2006, 38(6):749-757. 10.1016/j.bone.2005.11.017, 16412713.
38. Phornphutkul C, Wu KY, Yang X, Chen Q, Gruppuso PA. Insulin-like growth factor-I signaling is modified during chondrocyte differentiation. J Endocrinol 2004, 183(3):477-486. 10.1677/joe.1.05873, 15590974.
39. Tsai MT, Cheng CJ, Lin YC, Chen CC, Wu AR, Wu MT, Hsu CC, Yang RB. Isolation and characterization of a secreted, cell-surface glycoprotein SCUBE2 from humans. Biochem J 2009, 422(1):119-128. 10.1042/BJ20090341, 19480626.
40. Kawakami A, Nojima Y, Toyoda A, Takahoko M, Satoh M, Tanaka H, Wada H, Masai I, Terasaki H, Sakaki Y, Takeda H, Okamoto H. The zebrafish-secreted matrix protein you/scube2 is implicated in long-range regulation of hedgehog signaling. Curr Biol 2005, 15(5):480-488. 10.1016/j.cub.2005.02.018, 15753045.
41. Tu CF, Yan YT, Wu SY, Djoko B, Tsai MT, Cheng CJ, Yang RB. Domain and functional analysis of a novel platelet-endothelial cell surface protein, SCUBE1. J Biol Chem 2008, 283(18):12478-12488. 10.1074/jbc.M705872200, 18303018.
42. Yamaguchi A, Komori T, Suda T. Regulation of osteoblast differentiation mediated by bone morphogenetic proteins, hedgehogs, and Cbfa1. Endocr Rev 2000, 21(4):393-411. 10.1210/er.21.4.393, 10950158.
43. Marques CL, Rafael MS, Cancela ML, Laizé V. Establishment of primary cell cultures from fish calcified tissues. Cytotechnology 2007, 55(1):9-13. 10.1007/s10616-007-9098-8, 2289786, 19002990.
44. Chomczynski P, Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 1987, 162(1):156-159.
45. Tusher VG, Tibshirani R, Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 2001, 98(9):5116-5121. 10.1073/pnas.091062498, 33173, 11309499.