메뉴 건너뛰기




Volumn 719, Issue , 2011, Pages 479-497

Omics–Bioinformatics in the Context of Clinical Data

Author keywords

Biomarker; Clinical statistics; Clinical study; Data standards; Database; Minimum sample requirements; Outcome analysis; Target

Indexed keywords

BIOLOGICAL MARKER;

EID: 79958246049     PISSN: 10643745     EISSN: 19406029     Source Type: Book Series    
DOI: 10.1007/978-1-61779-027-0_22     Document Type: Chapter
Times cited : (13)

References (32)
  • 1
    • 77949780931 scopus 로고    scopus 로고
    • Omics-based medicine and systems pathology. A new perspective for personalized and predictive medicine
    • Tanaka, H. (2010) Omics-based medicine and systems pathology. A new perspective for personalized and predictive medicine. Methods Inf Med 16, 173–85.
    • (2010) Methods Inf Med , vol.16 , pp. 173-185
    • Tanaka, H.1
  • 2
    • 33748693297 scopus 로고    scopus 로고
    • Validation and clinical utility of a 70-gene prognostic signature for women with node-negative breast cancer
    • Buyse, M., Loi, S., van’t Veer, L., et al. (2006) Validation and clinical utility of a 70-gene prognostic signature for women with node-negative breast cancer. J Natl Cancer Inst 98, 1183–92.
    • (2006) J Natl Cancer Inst , vol.98 , pp. 1183-1192
    • Buyse, M.1    Loi, S.2    Van’T Veer, L.3
  • 3
    • 70349758752 scopus 로고    scopus 로고
    • Capillary electrophoresis coupled to mass spectrometry for proteomic profiling of human urine and biomarker discovery
    • Zürbig, P., Schiffer, E., and Mischak, H. (2009) Capillary electrophoresis coupled to mass spectrometry for proteomic profiling of human urine and biomarker discovery. Methods Mol Biol 564,105–21.
    • (2009) Methods Mol Biol , vol.564 , pp. 105-121
    • Zürbig, P.1    Schiffer, E.2    Mischak, H.3
  • 5
    • 27444441489 scopus 로고    scopus 로고
    • Falsely low urinary albumin concentrations after prolonged frozen storage of urine samples
    • Brinkman, J.W., de Zeeuw, D., Duker, J.J., Gansevoort, R.T., Kema, I.P., Hillege, H.L., et al. (2005) Falsely low urinary albumin concentrations after prolonged frozen storage of urine samples. Clin Chem 51, 2181–83.
    • (2005) Clin Chem , vol.51 , pp. 2181-2183
    • Brinkman, J.W.1    de Zeeuw, D.2    Duker, J.J.3    Gansevoort, R.T.4    Kema, I.P.5    Hillege, H.L.6
  • 6
    • 33846025456 scopus 로고    scopus 로고
    • Prolonged frozen storage of urine reduces the value of albuminuria for mortality prediction
    • Brinkman, J.W., de Zeeuw, D., Gansevoort, R.T., Duker, J.J., Kema, I.P., de Jong, P.E., et al. (2007) Prolonged frozen storage of urine reduces the value of albuminuria for mortality prediction. Clin Chem 53, 153–4.
    • (2007) Clin Chem , vol.53 , pp. 153-154
    • Brinkman, J.W.1    de Zeeuw, D.2    Gansevoort, R.T.3    Duker, J.J.4    Kema, I.P.5    de Jong, P.E.6
  • 7
    • 65549101079 scopus 로고    scopus 로고
    • Alkalinization of urine samples preserves albumin concentrations during prolonged frozen storage in patients with diabetes mellitus
    • Lambers Heerspink, H.J., Nauta, F.L., van der Zee, C.P., Brinkman, J.W., Gansevoort, R.T., de Zeeuw, D., et al. (2009) Alkalinization of urine samples preserves albumin concentrations during prolonged frozen storage in patients with diabetes mellitus. Diabet Med 26, 556–9.
    • (2009) Diabet Med , vol.26 , pp. 556-559
    • Lambers Heerspink, H.J.1    Nauta, F.L.2    van der Zee, C.P.3    Brinkman, J.W.4    Gansevoort, R.T.5    de Zeeuw, D.6
  • 9
    • 21644451292 scopus 로고    scopus 로고
    • Sample size calculation for multiple testing in microarray analysis
    • Jung, S.-H., Bang, H., and Young, S. (2005) Sample size calculation for multiple testing in microarray analysis. Biostatistics 6, 157–69.
    • (2005) Biostatistics , vol.6 , pp. 157-169
    • Jung, S.-H.1    Bang, H.2    Young, S.3
  • 10
    • 33747792789 scopus 로고    scopus 로고
    • Novel approaches to analyse glomerular proteins from smallest scale murine and human samples using DIGE saturation labelling
    • Sitek, B., Potthoff, S., Schulenborg, T., Stegbauer, J., Vinke, T., Rump, L.C., Meyer, H.E., Vonend, O., and Stuhler, K. (2006) Novel approaches to analyse glomerular proteins from smallest scale murine and human samples using DIGE saturation labelling. Proteomics 6, 4337–45.
    • (2006) Proteomics , vol.6 , pp. 4337-4345
    • Sitek, B.1    Potthoff, S.2    Schulenborg, T.3    Stegbauer, J.4    Vinke, T.5    Rump, L.C.6    Meyer, H.E.7    Vonend, O.8    Stuhler, K.9
  • 11
    • 69849106821 scopus 로고    scopus 로고
    • Capillary electrophoresis-mass spectrometry as a powerful tool in biomarker discovery and clinical diagnosis: An update of recent developments
    • Mischak, H., Coon, J.J., Novak, J., Weissinger, E.M., Schanstra, J.P., and Dominiczak, A. (2009) Capillary electrophoresis-mass spectrometry as a powerful tool in biomarker discovery and clinical diagnosis: An update of recent developments. Mass Spectrom Rev 28, 703–24.
    • (2009) Mass Spectrom Rev , vol.28 , pp. 703-724
    • Mischak, H.1    Coon, J.J.2    Novak, J.3    Weissinger, E.M.4    Schanstra, J.P.5    Dominiczak, A.6
  • 14
    • 48849086000 scopus 로고    scopus 로고
    • The ProteoMiner and the FortyNiners: Searching for gold nuggets in the proteomic arena
    • Righetti, P.G., and Boschetti, E. (2008) The ProteoMiner and the FortyNiners: Searching for gold nuggets in the proteomic arena. Mass Spectrom Rev 27, 596–608.
    • (2008) Mass Spectrom Rev , vol.27 , pp. 596-608
    • Righetti, P.G.1    Boschetti, E.2
  • 18
    • 0029743285 scopus 로고    scopus 로고
    • Explained variation for logistic regression
    • Mittlböck, M., and Schemper, M. (1996) Explained variation for logistic regression. Stat Med 15, 1987–97.
    • (1996) Stat Med , vol.15 , pp. 1987-1997
    • Mittlböck, M.1    Schemper, M.2
  • 19
    • 0034024003 scopus 로고    scopus 로고
    • Predictive accuracy and explained variation in Cox regression
    • Schemper, M., and Henderon, R. (2000) Predictive accuracy and explained variation in Cox regression. Biometrics 56, 249–55.
    • (2000) Biometrics , vol.56 , pp. 249-255
    • Schemper, M.1    Henderon, R.2
  • 20
    • 0037958480 scopus 로고    scopus 로고
    • Comparing the importance of prognostic factors in Cox and logistic regression using SAS
    • Heinze, G., and Schemper, M. (2003) Comparing the importance of prognostic factors in Cox and logistic regression using SAS. Comput Methods Programs Biomed 71, 1455–63.
    • (2003) Comput Methods Programs Biomed , vol.71 , pp. 1455-1463
    • Heinze, G.1    Schemper, M.2
  • 21
    • 33947645465 scopus 로고    scopus 로고
    • Gene expression profiling: Does it add predictive accuracy to clinical characteristics in cancer prognosis?
    • Dunkler, D., Michiels, S., and Schemper, M. (2007) Gene expression profiling: Does it add predictive accuracy to clinical characteristics in cancer prognosis? Eur J Cancer 43, 745–51.
    • (2007) Eur J Cancer , vol.43 , pp. 745-751
    • Dunkler, D.1    Michiels, S.2    Schemper, M.3
  • 22
    • 85194972808 scopus 로고    scopus 로고
    • Regression shrinkage and selection via the lasso
    • Tibshirani, R. (1996) Regression shrinkage and selection via the lasso. J Royal Stat Soc B 58, 267–88.
    • (1996) J Royal Stat Soc B , vol.58 , pp. 267-288
    • Tibshirani, R.1
  • 23
    • 0031015557 scopus 로고    scopus 로고
    • The lasso method for variable selection in the Cox model
    • Tibshirani, R. (1997) The lasso method for variable selection in the Cox model. Stat Med 16, 385–95.
    • (1997) Stat Med , vol.16 , pp. 385-395
    • Tibshirani, R.1
  • 24
    • 0000521473 scopus 로고
    • Ridge estimators in logistic regression
    • le Cessie, S., and van Houwelingen, H.C. (1992) Ridge estimators in logistic regression. Appl Stat 41, 191–201.
    • (1992) Appl Stat , vol.41 , pp. 191-201
    • Le Cessie, S.1    van Houwelingen, H.C.2
  • 25
    • 0028572354 scopus 로고
    • Penalized likelihood in Cox regression
    • Verweij, P.J.M., and van Houwelingen, H.C. (1994) Penalized likelihood in Cox regression. Stat Med 13, 2427–36.
    • (1994) Stat Med , vol.13 , pp. 2427-2436
    • Verweij, P.J.M.1    van Houwelingen, H.C.2
  • 26
    • 16244401458 scopus 로고    scopus 로고
    • Regularization and variable selection via the elastic net
    • Zou, H., and Hastie, T. (2005) Regularization and variable selection via the elastic net. J Royal Stat Soc B 67, 301–20.
    • (2005) J Royal Stat Soc B , vol.67 , pp. 301-320
    • Zou, H.1    Hastie, T.2
  • 27
    • 33646856024 scopus 로고    scopus 로고
    • Avoiding model selection bias in small-sample genomic datasets
    • Berrar, D., Bradbury, I., and Dubitzky, W. (2006) Avoiding model selection bias in small-sample genomic datasets. Bioinformatics 15, 1245–50.
    • (2006) Bioinformatics , vol.15 , pp. 1245-1250
    • Berrar, D.1    Bradbury, I.2    Dubitzky, W.3
  • 28
    • 33847116111 scopus 로고    scopus 로고
    • Appropriateness of some resampling-based inference procedures for assessing performance of prognostic classifiers derived from microarray data
    • Lusa, L., McShane, L.M., Radmacher, M.D., Shih, J.H., Wright, G.W., and Simon, R. (2007) Appropriateness of some resampling-based inference procedures for assessing performance of prognostic classifiers derived from microarray data. Stat Med 28, 1102–13.
    • (2007) Stat Med , vol.28 , pp. 1102-1113
    • Lusa, L.1    McShane, L.M.2    Radmacher, M.D.3    Shih, J.H.4    Wright, G.W.5    Simon, R.6
  • 29
    • 41649121369 scopus 로고    scopus 로고
    • Calculating confidence intervals for prediction error in microarray classification using resampling
    • Jiang, W., Varma, S., and Simon, R. (2008) Calculating confidence intervals for prediction error in microarray classification using resampling. Stat Appl Genet Mol Biol 7, 8.
    • (2008) Stat Appl Genet Mol Biol , vol.7 , pp. 8
    • Jiang, W.1    Varma, S.2    Simon, R.3
  • 30
    • 0024763561 scopus 로고
    • Multiple correlation: Exact power and sample size calculations
    • Gatsonis, C., and Sampson, A.R. (1989) Multiple correlation: Exact power and sample size calculations. Psychol Bull 106, 516–24.
    • (1989) Psychol Bull , vol.106 , pp. 516-524
    • Gatsonis, C.1    Sampson, A.R.2
  • 31
    • 4344601818 scopus 로고    scopus 로고
    • National Heart, Lung, and Blood Institute Clinical Proteomics Working Group report
    • Granger, C.B., Van Eyk, J.E., Mockrin, S.C., and Anderson, N.L. (2004) National Heart, Lung, and Blood Institute Clinical Proteomics Working Group report. Circulation 109, 1697–703.
    • (2004) Circulation , vol.109 , pp. 1697-1703
    • Granger, C.B.1    van Eyk, J.E.2    Mockrin, S.C.3    Anderson, N.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.