Substrate specificity of the Bacillus licheniformis lyxose isomerase YdaE and its application in in vitro catalysis for bioproduction of lyxose and glucose by two-step isomerization

Applied and Environmental Microbiology

Volumn 77, Issue 10, 2011, Pages 3343-3350

  Patel, Darshan H ^a   Wi, Seung Gon ^a   Lee, Seong Gene ^b   Lee, Dae Seok ^a   Song, Youn Ho ^b   Bae, Hyeun Jong ^a  

^a Chonnam National University   (South Korea)

^b Chonnam National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACILLUS LICHENIFORMIS; BIO-PRODUCTION; CATALYTIC EFFICIENCIES; D-GLUCOSE; D-XYLOSE; EFFICIENT PROCESS; ENZYMATIC PROCESS; IN-VITRO; INDUSTRIAL PRODUCTION; INITIAL CONCENTRATION; ISOMERASES; PURIFIED PROTEIN; RECOMBINANT PROTEIN; SUBSTRATE SPECIFICITY; THERMUS THERMOPHILUS; XYLOSE ISOMERASE;

BACILLI; BACTERIOLOGY; CATALYSIS; ESCHERICHIA COLI; GLUCOSE; ISOMERS; MANGANESE; MANGANESE COMPOUNDS; PROTEINS; SUBSTRATES; XYLOSE;

ISOMERIZATION;

GLUCOSE; ISOMERASE; LYXOSE; MANGANESE; MANNOSE; PENTOSE; RECOMBINANT PROTEIN; XYLOSE;

BACTERIUM; BIOLOGICAL PRODUCTION; CARBOHYDRATE; CATALYSIS; ENZYME ACTIVITY; PH; PROTEIN; RECOMBINATION; SUBSTRATE; TEMPERATURE EFFECT;

AMINO ACID SEQUENCE; ARTICLE; BACILLUS; CHEMISTRY; COENZYME; ENZYME SPECIFICITY; ENZYME STABILITY; ENZYMOLOGY; ESCHERICHIA COLI; GENE EXPRESSION; GENETICS; KINETICS; METABOLISM; MOLECULAR GENETICS; MOLECULAR WEIGHT; PH; TEMPERATURE; THERMUS THERMOPHILUS;

AMINO ACID SEQUENCE; BACILLUS; COENZYMES; ENZYME STABILITY; ESCHERICHIA COLI; GENE EXPRESSION; GLUCOSE; HYDROGEN-ION CONCENTRATION; ISOMERASES; KINETICS; MANGANESE; MANNOSE; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; PENTOSES; RECOMBINANT PROTEINS; SUBSTRATE SPECIFICITY; TEMPERATURE; THERMUS THERMOPHILUS; XYLOSE;

BACILLUS LICHENIFORMIS; ESCHERICHIA COLI; THERMUS THERMOPHILUS;

EID: 79958219972     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02693-10     Document Type: Article

References (37)

1. Ahern, T. J., and A. M. Klibanov. 1985. The mechanisms of irreversible enzyme inactivation at 100°C. Science 228:1280-1284.
2. Ahmed, Z.,. 2001. Production of natural and rare pentoses using microorganisms and their enzymes. Electron. J. Biotechnol. 4:103-111.
3. Ahmed, Z., et al. 1999. Production of D-lyxose from D-glucose by microbial and enzymatic methods. J. Biosci. Bioeng. 88:676-678.
4. Akagi, M., et al. 2002. A practical synthesis of L-ribose. Chem. Pharm. Bull. (Tokyo) 50:866-868.
5. Anderson, R. L., and D. P. Allison. 1965. Purification and characterization of D-lyxose isomerase. J. Biol. Chem. 240:2367-2372.
6. Badia, J., et al. 1991. L-Lyxose metabolism employs the L-rhamnose pathway in mutant cells of Escherichia coli adapted to grow on L-lyxose. J. Bacteriol. 173:5144-5150.
7. Bhosale, S. H., M. B. Rao, and V. V. Deshpande. 1996. Molecular and industrial aspects of glucose isomerase. Microbiol. Rev. 60:280-300.
8. Cho, E. A., et al. 2007. Characterization of a novel D-lyxose isomerase from Cohnella laevoribosii RI-39 sp. nov. J. Bacteriol. 189:1655-1663.
9. Cordwell, S. J. 1999. Microbial genomes and missing enzymes: redefining biochemical pathways. Arch. Microbiol. 172:269-279.
10. Davies, G. J., and B. Henrissat. 2002. Plant glyco-related genomics. Biochem. Soc. Trans. 30:292-297.
11. Dekker, K., H. Yamagata, K. K. Sakaguchi, and S. Udaka. 1991. Xylose (glucose) isomerase gene from the thermophile Thermus thermophilus: cloning, sequencing, and comparison with other thermostable xylose isomerases. J. Bacteriol. 173:3078-3083.
12. Granström, T. B., G. Takata, M. Tokuda, and K. Izumor. 2004. Izumoring: a novel and complete strategy for bioproduction of rare sugars. J. Biosci. Bioeng. 97:89-94.
13. Helanto, M., K. Kiviharju, T. Granström, M. Leisola, and A. Nyyssöä. 2009. Biotechnological production of L-ribose from L-arabinose. Appl. Microbiol. Biotechnol. 83:77-83.
14. Hey-Ferguson, A., and A. D. Elbein. 1970. Purification of a D-mannose isomerase from Mycobacterium smegmatis. J. Bacteriol. 101:777-780.
15. Hirose, J., K. Maeda, H. Yokoi, and Y. Takasaki. 2001. Purification and characterization of mannose isomerase from Agrobacterium radiobacter M-1. Biosci. Biotechnol. Biochem. 65:658-661.
16. Itoh, T., B. Mikami, W. Hashimoto, and K. Murata. 2008. Crystal structure of YihS in complex with D-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerase. J. Mol. Biol. 377:1443-1459.
17. Izumori, k. 2002. Bioproduction strategies for rare hexose sugars. Naturwissenschaften 89:120-124.
18. Izumori, K., and K. Yamanaka. 1977. Speculative studies on an anomeric specificity of inducers of D-lyxose isomerase. FEBS Lett. 77:133-135.
19. Keating, J. D., J. Robinson, M. A. Cotta, J. N. Saddler, and S. D. Mansfield. 2004. An ethanologenic yeast exhibiting unusual metabolism in the fermentation of lignocellulosic hexose sugars. J. Ind. Microbiol. Biotechnol. 31:235-244.
20. Kluyver, A. J. 1914. Ph.D. thesis. Biochemische suikerbepalingen. Delft University of Technology, Delft, Netherlands.
21. Kulka., R. G. 1956. Colorimetric estimation of ketopentoses and ketohexoses. Biochem. J. 63:542-548.
22. Kumar, S., C. J. Tsai, and R. Nussinov. 2000. Factors enhancing protein thermostability. Protein Eng. 13:179-191.
23. Kwon, H.-J., S.-J. Yeom, C.-S. Park, and D.-K. Oh. 2010. Substrate specificity of a recombinant D-lyxose isomerase from Providencia stuartii for monosaccharides. J. Biosci. Bioeng. 110:26-31.
24. Morita, M., et al. 1996. Practical total synthesis of (2S, 3S, 4R)-1-O-(α-Dgalactopyranosyl)-N-hexacosanoyl-2-amino-1,3,4-octadecanetriol, the antitumoral and immunostimulatory α-galactosylceramide, KRN7000. Biosci. Biotechnol. Biochem. 60:288-292.
25. Park, C. S., S. J. Yeom, Y. R. Lim, Y. S. Kim, and D. K. Oh. 2010. Substrate specificity of a recombinant D-lyxose isomerase from Serratia proteamaculans that produces D-lyxose and D-mannose. Lett. Appl. Microbiol. 51:343-350.
26. Pitkänen, J. P., et al. 2004. Excess mannose limits the growth of phosphomannose isomerase PMI40 deletion strain of Saccharomyces cerevisiae. J. Biol. Chem. 279:55737-55743.
27. Reifenberger, E., E. Boles, and M. Ciriacy. 1997. Kinetic characterization of individual hexose transporters of Saccharomyces cerevisiae and their relation to the triggering mechanisms of glucose repression. Eur. J. Biochem. 245: 324-333.
28. Rey, M. W. et al. 2004 Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species. Genome Biol. 5:R77.
29. Sambrook, J., and D. W. Russell. 2001. Molecular cloning: a laboratory manual, 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
30. Schallmey, M., A. Singh, and O. P. Ward. 2004. Developments in the use of Bacillus species for industrial production. Can. J. Microbiol. 50:1-17.
31. Stewart, C. S., S. H. Duncan, A. J. Richardson, A. G. Calder, and P. J. S. Dewey. 1995. The effect of the presence of glucose on the fermentation of mannose by anaerobic fungus Neocallimastix frontalis strain RE1. FEMS Microbiol. Lett. 127:57-63.
32. Takagi, Y., K. Nakai, T. Tsuchiya, and T. Takeuchi. 1996. A 5'-(trifluoromethyl) anthracycline glycoside: synthesis of antitumor-active 7-O-(2,6-dideoxy-6,6,6-trifluoro-alpha-L-lyxo-hexopyranosyl)adriamycinone. J. Med. Chem. 39:1582-1588.
33. Takahashi, H., Y. Iwai, Y. Hitomi, and S. Ikegami. 2002. Novel synthesis of L-ribose from D-mannono-1,4-lactone. Org. Lett. 4:2401-2403.
34. Usuki, C., Y. Kimura, and S. Adachi. 2007. Isomerization of hexoses in subcritical water. Food Sci. Technol. Res. 13:205-209.
35. White, R. H. 2006. The difficult road from sequence to function. J. Bacteriol. 188:3431-3432.
36. Yamabhai, M., et al. 2008. Secretion of recombinant Bacillus hydrolytic enzymes using Escherichia coli expression systems. J. Biotechnol. 133:50-57.
37. Yeom, S. J., J. H. Ji, N. H. Kim, C. S. Park, and D. K. Oh. 2009. Substrate specificity of mannose-6-phosphate isomerase from Bacillus subtilis and its application in the production of L-ribose. Appl. Environ. Microbiol. 75:4705-4710.