Rhizobium sphaerophysae sp. nov., a novel species isolated from root nodules of Sphaerophysa salsula in China

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 99, Issue 4, 2011, Pages 845-854

  Xu, Lin ^a,b   Shi, Jian Feng ^b   Zhao, Peng ^a   Chen, Wei Min ^a   Qin, Wei ^a   Tang, Ming ^a   Wei, Ge Hong ^a  

^a NORTHWEST A F UNIVERSITY   (China)

^b HEXI UNIVERSITY   (China)

Author keywords

Rhizobia; Sphaerophysa salsula; Taxonomy

Indexed keywords

RNA 16S;

ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CHINA; GENE SEQUENCE; MOLECULAR PHYLOGENY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT ROOT; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RHIZOBIUM; RHIZOBIUM SPHAEROPHYSAE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STRAIN IDENTIFICATION; UNINDEXED SEQUENCE;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHINA; DNA, BACTERIAL; FABACEAE; PHYLOGENY; POLYMERASE CHAIN REACTION; RHIZOBIUM; RNA, RIBOSOMAL, 16S; ROOT NODULES, PLANT; SOIL MICROBIOLOGY;

NEGIBACTERIA; RHIZOBIUM; RHIZOBIUM GIARDINII; SPHAEROPHYSA SALSULA;

EID: 79958214894     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-011-9559-0     Document Type: Article

References (35)

1. Barcellos FG, Menna P, Batista JSS, Hungria M (2007) Evidence of horizontal transfer of symbiotic genes from a Bradyrhizobium japonicum inoculant strain to indigenous Sinorhizobium (Ensifer) fredii and Bradyrhizobium elkanii in a Brazilian savannah soil. Appl Environ Microbiol 73: 2635-2643 (Pubitemid 46668757)
2. Berge O, Lodhi A, Brandelet G, Santaella C, Roncato MA, Christen R, Heulin T Achouak W (2009) Rhizobium alamii sp. nov., an exopolysaccharide- producing species isolated from legume and non-legume rhizospheres. Int J Syst Evol Microbiol 59:367-372
3. Broothaerts W, Mitchell HJ, Weir B, Kaines S, Smith LMA, Yang W, Mayer JE, Roa-Rodríguez C, Jefferson RA (2005) Gene transfer to plants by diverse species of bacteria. Nature 433:629-633 (Pubitemid 40282995)
4. De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12:133-142
5. Dong XZ, Cai MY (2001) Determinative manual for routine bacteriology. Scientific Press, Beijing
6. Elliott GN, Chen WM, Bontemps C, Chou JH, Young JPW, Sprent JI, James EK (2007) Nodulation of Cyclopia spp. (Leguminosae, Papilionoideae) by Burkholderia tuberum. Ann. Bot. 100:1403-1411
7. Galtier N, Gouy M, Gautier C (1996) SEAVIEW and PHYLO-WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12:543-548
8. Gao JL, Sun JG, Li Y, Wang ET, Chen WX (1994) Numerical taxonomy and DNA relatedness of tropical rhizobia isolated from Hainan province, China. Int J Syst Bacteriol 44:151-158 (Pubitemid 24023668)
9. Gaunt MW, Turner SL, Rigottier-Gois L, Lloyd-Macgilp SA, Young JPW (2001) Phylogenies of atpD and recA support the small subunit rRNA-based classification of rhizobia. Int J Syst Evol Microbiol 51:2037-2048 (Pubitemid 33107425)
10. Gogarten JP, Townsend JP (2005) Horizontal gene transfer, genome innovation and evolution. Nat Rev Microbiol 3: 679-687 (Pubitemid 41195085)
11. Graham PH, Sadowsky MJ, Keyser HH, Barnet YM, Bradley RS, Cooper JE, De Ley DJ, DW JarvisB, Roslycky EB (1991) Proposed minimal standards for the description of new genera and species of root- and stem-nodulating bacteria. Int J Syst Bacteriol 41:582-587
12. Gu CT, Wang ET, Tian CF, Han TX, Chen WF, Sui XH, Chen WX (2008) Rhizobium miluonense sp. nov., a symbiotic bacterium isolated from Lespedeza root nodules. Int J Syst Evol Microbiol 58:1364-1368
13. Han TX, Wang ET, Wu LJ, Chen WF, Gu JG, Gu CT, Tian CF, Chen WX (2008) Rhizobium multihospitium sp. nov., isolated from multiple legume species native of Xinjiang, China. Int J Syst Evol Microbiol 58:1693-1699
14. Hou BC, Wang ET, Li Y, Jr-Jia RZ, Chen WF, Gao Y, Dong RJ, Chen WX (2009) Rhizobium tibeticum sp. nov., a symbiotic bacterium isolated from Trigonella archiducisnicolai (irj.) Vassilcz. Int J Syst Evol Microbiol 59: 3051-3057
15. Jordan DC (1984) Family III. Rhizobiaceae Conn 1938, 321 AL. Bergey's Manual Syst Bacteriol 1:234-235
16. Kaschuk G, Hungria M, Andrade DS, Campo RJ (2006) Genetic diversity of rhizobia associated with common bean (Phaseolus vulgaris L.) grown under no-tillage and conventional systems in Southern Brazil. Appl Soil Ecol 32:210-220
17. Kwon SW, Park JY, Kim JS, Kang JW, Cho YH, Lim CK, Parker MA, Lee GB (2005) Phylogenetic analysis of the genera Bradyrhizobium, Mesorhizobium, Rhizobium and Sinorhizobium on the basis of 16S rRNA gene and internally transcribed spacer region sequences. Int J Syst Evol Microbiol 55:263-270 (Pubitemid 40185500)
18. Laguerre G, Nour SM, Macheret V, Sanjuan J, Drouin P, Amarger N (2001) Classification of rhizobia based on nodC and nifH gene analysis reveals a close phylogenetic relationship among Phaseolus vulgaris symbionts. Microbiology 147:981-993 (Pubitemid 32401338)
19. Lin DX, Chen WF, Wang FQ, Hu D, Wang ET, Sui XH, Chen WX (2009) Rhizobium mesosinicum sp. nov., isolated from root nodules of three different legumes. Int J Syst Evol Microbiol 59:1919-1923
20. Lu YL, Chen WF, Han LL, Wang ET, Chen WX (2009) Rhizobium alkalisoli sp. nov., isolated from Caragana intermedia growing in saline-alkaline soils in the north of China. Int J Syst Evol Microbiol 59:3006-3011
21. Marmur J (1961) A procedure for the isolation of DNA from microorganisms. J Mol Biol 3:208-218
22. Marmur J, Doty P (1962) Determination of the base composition of 171 deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5:109-118
23. Menna P, Pereira AA, Bangel EV, Hungria M (2009) Rep-PCR of tropical rhizobia for strain fingerprinting, biodiversity appraisal and as a taxonomic and phylogenetic tool. Symbiosis 48:120-130
24. Nandasena KG, O'Hara GW, Tiwari R, Howieson P, John G (2006) Rapid in situ evolution of nodulating strains for biserrula pelecinus L. through lateral transfer of a symbiosis island from the original mesorhizobial inoculant. Appl Environ Microbiol 72:7365-7367 (Pubitemid 44748456)
25. Peng GX, Yuan QH, Li HX, Zhang W, Tan ZY (2008) Rhizobium oryzae sp. nov., isolated from the wild rice Oryza alta. Int J Syst Evol Microbiol 58:2158-2163
26. Ren DW, Chen WF, Sui XH, Wang ET, Chen WX (2010a) Rhizobium vignae sp. nov., a symbiotic bacterium isolated from multiple legume species grown in China. Int J Syst Evol Microbiol. doi:10.1099/ijs.0.023143-0
27. Ren DW, Wang ET, Chen WF, Sui XH, Zhang XX, Liu HC, Chen WX (2010b) Rhizobium herbae sp. nov. and Rhizobium giardinii-related bacteria, minor microsymbionts of various wild legumes in China. Int J Syst Evol Microbiol. doi:10.1099/ijs.0.024943-0
28. Sneath PHA, Sokal RB (1973) Numerical taxonomy. The principles and practice of numerical classification. W. H. Freeman and Co, San Francisco
29. Terefework Z, Kaijalainen S, Lindström K (2001) AFLP finger-printing as a tool to study the genetic diversity of Rhizobium galegae. J Biotechnol 91:169-180
30. Tian CF, Young JPW, Wang ET, Tamimi SM, Chen WX (2010) Population mixing of Rhizobium leguminosarum bv. viciae nodulating Vicia faba: the role of recombination and lateral gene transfer. FEMS Microbiol Ecol 73: 563-576
31. Turner SL, Young JPW (2000) The glutamine synthetases of rhizobia: phylogenetics and evolutionary implications. Mol Biol Evol 17:309-319 (Pubitemid 30075600)
32. Xu L, Xu JJ, Liu QL, Xie RM, Wei GH (2009) Genetic diversity in rhizobia isolated from Sphaerophysa salsula in several regions of northwestern China. Biodiversity Science 17:69-75
33. Young JM, Kuykendall LD, Martinez-Romero E, Kerr A, Sawada H et al (2001) A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium Conn 1942 and Allorhizobium undicola de Lajudie et al. 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vitis. Int J Syst Evol Microbiol 51:89-103 (Pubitemid 32118416)
34. Zhang GX, Ren SZ, Xu MY, Zeng GQ, Luo HD, Chen JL, Tan ZY, Sun GP (2010a) Rhizobium borbori sp. nov., an aniline-degrading bacterium isolated from activated sludge. Int J Syst Evol Microbiol. doi:10.1099/ijs.0.022228-0
35. Zhang RJ, Hou BC, Wang ET, Li YJ, Zhang XX, Chen WX (2010b) Rhizobium tubonense sp. nov., a symbiotic bacterium isolated from root nodules of Oxytropis glabra grown in Tibet, China. Int J Syst Evol Microbiol. doi: 10.1099/ijs.0.020156-0