-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0013902668
-
Antibiotic susceptibility testing by a standardized single disk method
-
Bauer, A. W., Kirby, W. M. M., Sherris, J. C. & Turck, M. (1966). Antibiotic susceptibility testing by a standardized single disk method. Am J Clin Pathol 45, 493-496.
-
(1966)
Am J Clin Pathol
, vol.45
, pp. 493-496
-
-
Bauer, A.W.1
Kirby, W.M.M.2
Sherris, J.C.3
Turck, M.4
-
3
-
-
33845261493
-
A rapid method of total lipid extraction and purification
-
Bligh, E. G. & Dyer, W. J. (1959). A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37, 911-917.
-
(1959)
Can J Biochem Physiol
, vol.37
, pp. 911-917
-
-
Bligh, E.G.1
Dyer, W.J.2
-
4
-
-
0017758250
-
A rapid method for the base ratio determination of bacterial DNA
-
Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
-
(1977)
Anal Biochem
, vol.81
, pp. 461-466
-
-
Cashion, P.1
Holder-Franklin, M.A.2
McCully, J.3
Franklin, M.4
-
5
-
-
35648991375
-
EzTaxon: A web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences
-
Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 2259-2261
-
-
Chun, J.1
Lee, J.-H.2
Jung, Y.3
Kim, M.4
Kim, S.5
Kim, B.K.6
Lim, Y.W.7
-
6
-
-
0019490792
-
Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implication
-
Collins, M. D. & Jones, D. (1981). Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implication. Microbiol Rev 45, 316-354.
-
(1981)
Microbiol Rev
, vol.45
, pp. 316-354
-
-
Collins, M.D.1
Jones, D.2
-
7
-
-
0017682064
-
Distribution of menaquinones in actinomycetes and corynebacteria
-
Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
-
(1977)
J Gen Microbiol
, vol.100
, pp. 221-230
-
-
Collins, M.D.1
Pirouz, T.2
Goodfellow, M.3
Minnikin, D.E.4
-
9
-
-
0014713693
-
The quantitative measurement of DNA hybridization from renaturation rates
-
De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
-
(1970)
Eur J Biochem
, vol.12
, pp. 133-142
-
-
de Ley, J.1
Cattoir, H.2
Reynaerts, A.3
-
10
-
-
84919688284
-
Endosymbiotic bacteria living inside the poultry red mite (Dermanyssus gallinae)
-
De Luna, C. J., Moro, C. V., Guy, J. H., Zenner, L. & Sparagano, O. A. (2009). Endosymbiotic bacteria living inside the poultry red mite (Dermanyssus gallinae). Exp Appl Acarol 48, 105-113.
-
(2009)
Exp Appl Acarol
, vol.48
, pp. 105-113
-
-
de Luna, C.J.1
Moro, C.V.2
Guy, J.H.3
Zenner, L.4
Sparagano, O.A.5
-
11
-
-
0005428775
-
The nature of discrepancies between haemolysins in culture filtrates and plate haemolysin patterns of staphylococci
-
Elek, S. D. & Levy, E. (1954). The nature of discrepancies between haemolysins in culture filtrates and plate haemolysin patterns of staphylococci. J Pathol Bacteriol 68, 31-40.
-
(1954)
J Pathol Bacteriol
, vol.68
, pp. 31-40
-
-
Elek, S.D.1
Levy, E.2
-
12
-
-
84959747425
-
Toward defining the course of evolution: Minimum change for specific tree topology
-
Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for specific tree topology. Syst Zool 20, 406-416.
-
(1971)
Syst Zool
, vol.20
, pp. 406-416
-
-
Fitch, W.M.1
-
13
-
-
0004217182
-
-
Washington, DC: American Society for Microbiology
-
Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
-
(1994)
Methods for General and Molecular Bacteriology
-
-
Gerhardt, P.1
Murray, R.G.E.2
Wood, W.A.3
Krieg, N.R.4
-
14
-
-
0030870230
-
Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil
-
Groth, I., Schumann, P., Rainey, F. A., Martin, K., Schuetze, B. & Augsten, K. (1997). Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil. Int J Syst Bacteriol 47, 1129-1133.
-
(1997)
Int J Syst Bacteriol
, vol.47
, pp. 1129-1133
-
-
Groth, I.1
Schumann, P.2
Rainey, F.A.3
Martin, K.4
Schuetze, B.5
Augsten, K.6
-
16
-
-
77049130214
-
The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various gram negative bacteria
-
Hugh, R. & Leifson, E. (1953). The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various gram negative bacteria. J Bacteriol 66, 24-26.
-
(1953)
J Bacteriol
, vol.66
, pp. 24-26
-
-
Hugh, R.1
Leifson, E.2
-
17
-
-
0020549589
-
Studies on the spectrophotometric determination of DNA hybridization from renaturation rates
-
Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
-
(1983)
Syst Appl Microbiol
, vol.4
, pp. 184-192
-
-
Huß, V.A.R.1
Festl, H.2
Schleifer, K.H.3
-
18
-
-
12444327259
-
Analysis of the bacterial community inhabiting an aerobic thermophilic sequencing batch reactor (AT-SBR) treating swine waste
-
Juteau, P., Tremblay, D., Villemur, R., Bisaillon, J. G. & Beaudet, R. (2004). Analysis of the bacterial community inhabiting an aerobic thermophilic sequencing batch reactor (AT-SBR) treating swine waste. Appl Microbiol Biotechnol 66, 115-122.
-
(2004)
Appl Microbiol Biotechnol
, vol.66
, pp. 115-122
-
-
Juteau, P.1
Tremblay, D.2
Villemur, R.3
Bisaillon, J.G.4
Beaudet, R.5
-
19
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
-
(1980)
J Mol Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
20
-
-
0001123775
-
Utilization of the salts of organic acids by the colon-aerogenes group
-
Koser, S. A. (1923). Utilization of the salts of organic acids by the colon-aerogenes group. J Bacteriol 8, 493-520.
-
(1923)
J Bacteriol
, vol.8
, pp. 493-520
-
-
Koser, S.A.1
-
21
-
-
3242810318
-
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
-
Kumar, S. K., Tamura, K. & Nei, M. (2004). MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 5, 150-163.
-
(2004)
Brief Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.K.1
Tamura, K.2
Nei, M.3
-
22
-
-
34047098347
-
Human infection with Schineria larvae
-
Maurin, M., Delbano, J. N., Mackaya, L., Colomb, H., Guier, C., Mandjee, A., Recule, C. & Croize, J. (2007). Human infection with Schineria larvae. Emerg Infect Dis 13, 657-659.
-
(2007)
Emerg Infect Dis
, vol.13
, pp. 657-659
-
-
Maurin, M.1
Delbano, J.N.2
McKaya, L.3
Colomb, H.4
Guier, C.5
Mandjee, A.6
Recule, C.7
Croize, J.8
-
23
-
-
0000198211
-
Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography
-
Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
-
(1989)
Int J Syst Bacteriol
, vol.39
, pp. 159-167
-
-
Mesbah, M.1
Premachandran, U.2
Whitman, W.B.3
-
24
-
-
77049178217
-
Activity determination of amino acid decarboxylases in Enterobacteriaceae
-
Møller, V. (1954). Activity determination of amino acid decarboxylases in Enterobacteriaceae. Acta Pathol Microbiol Scand 34, 102-114.
-
(1954)
Acta Pathol Microbiol Scand
, vol.34
, pp. 102-114
-
-
Møller, V.1
-
25
-
-
0023372577
-
A rapid test for chitinase activity that uses 4-methylumbelliferyl-N-acetyl-b-D-glucosaminide
-
O'Brien, M. & Colwell, R. R. (1987). A rapid test for chitinase activity that uses 4-methylumbelliferyl-N-acetyl-b-D-glucosaminide. Appl Environ Microbiol 53, 1718-1720.
-
(1987)
Appl Environ Microbiol
, vol.53
, pp. 1718-1720
-
-
O'Brien, M.1
Colwell, R.R.2
-
26
-
-
0029799968
-
The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: Proposal of Nocardiopsaceae fam. nov
-
Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R. M. & Stackebrandt, E. (1996). The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46, 1088-1092.
-
(1996)
Int J Syst Bacteriol
, vol.46
, pp. 1088-1092
-
-
Rainey, F.A.1
Ward-Rainey, N.2
Kroppenstedt, R.M.3
Stackebrandt, E.4
-
27
-
-
34047102867
-
Isolation of Schineria sp. from a man
-
Roudiere, L., Jean-Pierre, H., Comte, C., Zorgniotti, I., Marchandin, H. & Jumas-Bilak, E. (2007). Isolation of Schineria sp. from a man. Emerg Infect Dis 13, 659-661.
-
(2007)
Emerg Infect Dis
, vol.13
, pp. 659-661
-
-
Roudiere, L.1
Jean-Pierre, H.2
Comte, C.3
Zorgniotti, I.4
Marchandin, H.5
Jumas-Bilak, E.6
-
28
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
29
-
-
84960552276
-
A culture medium for differentiating organisms of typhoid colon aerogenes groups and for isolation of certain fungi
-
Simmons, J. S. (1926). A culture medium for differentiating organisms of typhoid colon aerogenes groups and for isolation of certain fungi. J Infect Dis 39, 209-214.
-
(1926)
J Infect Dis
, vol.39
, pp. 209-214
-
-
Simmons, J.S.1
-
30
-
-
0000612080
-
Phenotypic characterisation
-
In, Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology
-
Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterisation. In Methods for General and Molecular Bacteriology, pp. 603-711. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
-
(1994)
Methods for General and Molecular Bacteriology
, pp. 603-711
-
-
Smibert, R.M.1
Krieg, N.R.2
-
31
-
-
0014444144
-
A low-viscosity epoxy resin embedding medium for electron microscopy
-
Spurr, A. R. (1969). A low-viscosity epoxy resin embedding medium for electron microscopy. J Ultrastruct Res 26, 31-43.
-
(1969)
J Ultrastruct Res
, vol.26
, pp. 31-43
-
-
Spurr, A.R.1
-
32
-
-
0021715576
-
Determination of DNA base composition by reversed-phase high-performance liquid chromatography
-
Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
-
(1984)
FEMS Microbiol Lett
, vol.25
, pp. 125-128
-
-
Tamaoka, J.1
Komagata, K.2
-
33
-
-
0019944266
-
Rapid, modified oxidase test for oxidase-variable bacterial isolates
-
Tarrand, J. J. & Gröschel, D. H. M. (1982). Rapid, modified oxidase test for oxidase-variable bacterial isolates. J Clin Microbiol 16, 772-774.
-
(1982)
J Clin Microbiol
, vol.16
, pp. 772-774
-
-
Tarrand, J.J.1
Gröschel, D.H.M.2
-
34
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
35
-
-
65949111437
-
Phenotypic characterization and the principles of comparative systematics
-
In, 3rd edn, Edited by C. A. Reddy, T. J. Beveridge, J. A. Breznak, G. Marzluf, T. M. Schmidt & L. R. Snyder. Washington, DC: American Society for Microbiology
-
Tindall, B. J., Sikorski, J., Smibert, R. M. & Kreig, N. R. (2007). Phenotypic characterization and the principles of comparative systematics. In Methods for General and Molecular Microbiology, 3rd edn, pp. 330-393. Edited by C. A. Reddy, T. J. Beveridge, J. A. Breznak, G. Marzluf, T. M. Schmidt & L. R. Snyder. Washington, DC: American Society for Microbiology.
-
(2007)
Methods for General and Molecular Microbiology
, pp. 330-393
-
-
Tindall, B.J.1
Sikorski, J.2
Smibert, R.M.3
Kreig, N.R.4
-
36
-
-
0035071850
-
Schineria larvae gen. nov., sp. nov., isolated from the 1st and 2nd larval stages of Wohlfahrtia magnifica (Diptera: Sarcophagidae)
-
Tóth, E., Kovács, G., Schumann, P., Kovács, A. L., Steiner, U., Halbritter, A. & Márialigeti, K. (2001). Schineria larvae gen. nov., sp. nov., isolated from the 1st and 2nd larval stages of Wohlfahrtia magnifica (Diptera: Sarcophagidae). Int J Syst EvolMicrobiol 51, 401-407.
-
(2001)
Int J Syst EvolMicrobiol
, vol.51
, pp. 401-407
-
-
Tóth, E.1
Kovács, G.2
Schumann, P.3
Kovács, A.L.4
Steiner, U.5
Halbritter, A.6
Márialigeti, K.7
-
37
-
-
32244448939
-
Bacteria isolated from the different developmental stages and larval organs of the obligate parasitic fly, Wohlfahrtia magnifica (Diptera: Sarcophagidae)
-
Tóth, E. M., Hell, E., Kovács, G., Borsodi, A. K. & Márialigeti, K. (2006). Bacteria isolated from the different developmental stages and larval organs of the obligate parasitic fly, Wohlfahrtia magnifica (Diptera: Sarcophagidae). Microb Ecol 51, 13-21.
-
(2006)
Microb Ecol
, vol.51
, pp. 13-21
-
-
Tóth, E.M.1
Hell, E.2
Kovács, G.3
Borsodi, A.K.4
Márialigeti, K.5
-
38
-
-
33846513555
-
Proposal to replace the illegitimate genus name Schineria Toth et al. 2001 with the genus name Ignatzschineria gen. nov. and to replace the illegitimate combination Schineria larvae Toth et al. 2001 with Ignatzschineria larvae comb. nov
-
Tóth, E. M., Borsodi, A. K., Euzéby, J. P., Tindall, B. J. & Márialigeti, K. (2007). Proposal to replace the illegitimate genus name Schineria Toth et al. 2001 with the genus name Ignatzschineria gen. nov. and to replace the illegitimate combination Schineria larvae Toth et al. 2001 with Ignatzschineria larvae comb. nov. Int J Syst Evol Microbiol 57, 179-180.
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 179-180
-
-
Tóth, E.M.1
Borsodi, A.K.2
Euzéby, J.P.3
Tindall, B.J.4
Márialigeti, K.5
-
39
-
-
47249128107
-
Wohlfahrtiimonas chitiniclastica gen. nov., sp. nov., a new gammaproteobacterium isolated from Wohlfahrtia magnifica (Diptera: Sarcophagidae)
-
Tóth, E. M., Schumann, P., Borsodi, A. K., Kéki, Z., Kovács, A. L. & Márialigeti, K. (2008). Wohlfahrtiimonas chitiniclastica gen. nov., sp. nov., a new gammaproteobacterium isolated from Wohlfahrtia magnifica (Diptera: Sarcophagidae). Int J Syst Evol Microbiol 58, 976-981.
-
(2008)
Int J Syst Evol Microbiol
, vol.58
, pp. 976-981
-
-
Tóth, E.M.1
Schumann, P.2
Borsodi, A.K.3
Kéki, Z.4
Kovács, A.L.5
Márialigeti, K.6
-
40
-
-
58149352274
-
Bacterial taxa associated with the hematophagous mite Dermanyssus gallinae detected by 16S rRNA PCR amplification and TTGE fingerprinting
-
Valiente Moro, C., Thioulouse, J., Chauve, C., Normand, P. & Zenner, L. (2009). Bacterial taxa associated with the hematophagous mite Dermanyssus gallinae detected by 16S rRNA PCR amplification and TTGE fingerprinting. Res Microbiol 160, 63-70.
-
(2009)
Res Microbiol
, vol.160
, pp. 63-70
-
-
Valiente Moro, C.1
Thioulouse, J.2
Chauve, C.3
Normand, P.4
Zenner, L.5
-
41
-
-
0027182309
-
Amplification and sequencing of variable regions in bacterial 23S ribosomal RNA genes with conserved primer sequences
-
Van Camp, G., Chapelle, S. & De Wachter, R. (1993). Amplification and sequencing of variable regions in bacterial 23S ribosomal RNA genes with conserved primer sequences. Curr Microbiol 27, 147-151.
-
(1993)
Curr Microbiol
, vol.27
, pp. 147-151
-
-
van Camp, G.1
Chapelle, S.2
de Wachter, R.3
-
42
-
-
0020450836
-
Numerical taxonomy of moderately halophilic Gram-negative rods
-
Ventosa, A., Quesada, E., Rodriguez-Valera, F., Ruiz-Berraquero, F. & Ramos-Cormenzana, A. (1982). Numerical taxonomy of moderately halophilic Gram-negative rods. J Gen Microbiol 128, 1959-1968.
-
(1982)
J Gen Microbiol
, vol.128
, pp. 1959-1968
-
-
Ventosa, A.1
Quesada, E.2
Rodriguez-Valera, F.3
Ruiz-Berraquero, F.4
Ramos-Cormenzana, A.5
-
43
-
-
0026323259
-
Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes
-
Versalovic, J., Koeuth, T. & Lupski, J. R. (1991). Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res 19, 6823-6831.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 6823-6831
-
-
Versalovic, J.1
Koeuth, T.2
Lupski, J.R.3
-
44
-
-
0000770675
-
Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
-
other authors
-
Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
-
(1987)
Int J Syst Bacteriol
, vol.37
, pp. 463-464
-
-
Wayne, L.G.1
Brenner, D.J.2
Colwell, R.R.3
Grimont, P.A.D.4
Kandler, O.5
Krichevsky, M.I.6
Moore, L.H.7
Moore, W.E.C.8
Murray, R.G.E.9
-
45
-
-
0034848170
-
DAMBE: Software package for data analysis in molecular biology and evolution
-
Xia, X. & Xie, Z. (2001). DAMBE: software package for data analysis in molecular biology and evolution. J Hered 92, 371-373.
-
(2001)
J Hered
, vol.92
, pp. 371-373
-
-
Xia, X.1
Xie, Z.2
-
46
-
-
0028948030
-
PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains
-
Yamamoto, S. & Harayama, S. (1995). PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains. Appl Environ Microbiol 61, 1104-1109.
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 1104-1109
-
-
Yamamoto, S.1
Harayama, S.2
-
47
-
-
0034053725
-
A greedy algorithm for aligning DNA sequences
-
Zhang, Z., Schwartz, S., Wagner, L. & Miller, W. (2000). A greedy algorithm for aligning DNA sequences. J Comput Biol 7, 203-214.
-
(2000)
J Comput Biol
, vol.7
, pp. 203-214
-
-
Zhang, Z.1
Schwartz, S.2
Wagner, L.3
Miller, W.4
|