Genetic characterization, species differentiation and detection of Fasciola spp. by molecular approaches

Parasites and Vectors

Volumn 4, Issue 1, 2011, Pages

  Ai, Lin ^a,b,c   Chen, Mu Xin ^a,b   Alasaad, Samer ^d   Elsheikha, Hany M ^e   Li, Juan ^c   Li, Hai Long ^c   Lin, Rui Qing ^c   Zou, Feng Cai ^f   Zhu, Xing Quan ^a,f,g   Chen, Jia Xu ^b  

^a Lanzhou Veterinary Research Institute   (China)

^b CHINESE CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^c SOUTH CHINA AGRICULTURAL UNIVERSITY   (China)

^d DEPARTMENT OF CONSERVATION BIOLOGY   (Spain)

^e UNIVERSITY OF NOTTINGHAM   (United Kingdom)

^f YUNNAN AGRICULTURAL UNIVERSITY   (China)

^g HEILONGJIANG BAYI AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; MITOCHONDRIAL DNA; RIBOSOME DNA; HELMINTH DNA;

DNA POLYMORPHISM; DNA PROBE; FASCIOLA GIGANTICA; FASCIOLA HEPATICA; GENE DELETION; GENE SEQUENCE; GENETIC VARIABILITY; GENETICS; GENOTYPE; LOOP MEDIATED ISOTHERMAL AMPLIFICATION; MICROORGANISM DETECTION; MOLECULAR BIOLOGY; MOLECULAR DIAGNOSIS; MULTIPLEX POLYMERASE CHAIN REACTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; RANDOM AMPLIFIED POLYMORPHIC DNA; REAL TIME POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; REVIEW; SINGLE STRAND CONFORMATION POLYMORPHISM; ANIMAL; CLASSIFICATION; FASCIOLA; FASCIOLIASIS; HUMAN; ISOLATION AND PURIFICATION; METHODOLOGY; PARASITOLOGY;

FASCIOLA; FASCIOLA HEPATICA;

ANIMALS; DNA, HELMINTH; FASCIOLA; FASCIOLIASIS; GENOTYPE; HUMANS; MOLECULAR DIAGNOSTIC TECHNIQUES; PARASITOLOGY;

EID: 79958154317     PISSN: None     EISSN: 17563305     Source Type: Journal    
DOI: 10.1186/1756-3305-4-101     Document Type: Review

References (62)

1. Fascioliasis and other plant-borne trematode zoonoses. S Mas-Coma MD Bargues MA Valero, Int J Parasitol 2005 35 1255 1278 10.1016/j.ijpara.2005.07. 010 16150452 (Pubitemid 41395182)
2. Food-borne parasitic zoonoses in China: perspective for control. P Zhou N Chen RL Zhang RQ Lin XQ Zhu, Trends Parasitol 2008 24 190 196 10.1016/j.pt.2008.01.001 18314393
3. Epidemiology of human fascioliasis: a review and proposed new classification. MS Mas-Coma JG Esteban MD Bargues, Bull World Health Organ 1999 77 340 346 10327713 (Pubitemid 29282843)
4. Progress in development of liver fluke vaccines. TW Spithill JP Dalton, Parasitol Today 1998 14 224 228 10.1016/S0169-4758(98)01245-9 17040765 (Pubitemid 28240078)
5. Molecular confirmation that Fasciola gigantica can undertake aberrant migrations in human hosts. TH Le NV De T Agatsuma D Blair J Vercruysse P Dorny TG Nguyen DP McManus, J Clin Microbiol 2007 45 648 650 10.1128/JCM.01151-06 17135435
6. Fasciola, lymnaeids and human fascioliasis, with a global overview on disease transmission, epidemiology, evolutionarygenetics, molecular epidemiology and control. S Mas-Coma MA Valero MD Bargues, Adv Parasitol 2009 69 41 146 19622408
7. Some clinico-pathologic findings in elephants (Elephas maximus) infected with Fasciola Jacksoni. IW Caple MR Jainudeen TD Buick CY Song, J Wildl Dis 1978 14 110 115 633508
8. Discrimination of the ITS1 types of Fasciola spp. based on a PCR-RFLP method. M Ichikawa T Itagaki, Parasitol Res 2010 106 757 761 10.1007/s00436-010-1724-2 20107839
9. Genotypic characterization and species identification of Fasciola spp. with implications regarding the isolates infecting goats in Vietnam. TG Nguyen N Van De J Vercruysse P Dorny TH Le, Exp Parasitol 2009 123 354 361 10.1016/j.exppara.2009.09.001 19733565
10. Sequence-related amplified polymorphism, an effective molecular approach for studying genetic variation in Fasciola spp. of human and animal health significance. QY Li SJ Dong WY Zhang RQ Lin CR Wang DX Qian ZR Lun HQ Song XQ Zhu, Electrophoresis 2009 30 403 409 10.1002/elps.200800411 19204953
11. Sequence heterogeneity in a repetitive DNA element of Fasciola. F Kramer T Schnieder, Int J Parasitol 1998 28 1923 1929 10.1016/S0020-7519(98)00162-3 9925273 (Pubitemid 29017727)
12. Evolutionary origins, diversification, and biogeography of liver flukes (Digenea, Fasciolidae). WM Lotfy SV Brant RJ DeJong TH Le A Demiaszkiewicz RP Rajapakse VB Perera JR Laursen ES Loker, Am J Trop Med Hyg 2008 79 248 255 18689632
13. Taxonomic status of the Japanese triploid forms of Fasciola: comparison of mitochondrial ND1 and COI sequences with F. hepatica and F. gigantica. T Itagaki KI Tsutsumi K Ito Y Tsutsumi, J Parasitol 1998 84 445 448 10.2307/3284510 9576524 (Pubitemid 28217428)
14. Triploid form of Fasciola in Japan: genetic relationships between Fasciola hepatica and Fasciola gigantica determined by ITS-2 sequence of nuclear rDNA. T Itagaki K Tsutsumi, Int J Parasitol 1998 28 777 781 10.1016/S0020-7519(98)00037-X 9650058 (Pubitemid 28266908)
15. Genetic characterization of parthenogenic Fasciola sp. in Japan on the basis of the sequences of ribosomal and mitochondrial DNA. T Itagaki M Kikawa K Sakaguchi J Shimo K Terasaki T Shibahara K Fukuda, Parasitology 2005 131 679 685 10.1017/S0031182005008292 16255826 (Pubitemid 41577941)
16. Molecular characterization of parthenogenic Fasciola sp. in Korea on the basis of DNA sequences of ribosomal ITS1 and mitochondrial NDI gene. T Itagaki M Kikawa K Terasaki T Shibahara K Fukuda, J Vet Med Sci 2005 67 1115 1118 10.1292/jvms.67.1115 16327222 (Pubitemid 41758220)
17. Occurrence of spermic diploid and aspermic triploid forms of Fasciola in Vietnam and their molecular characterization based on nuclear and mitochondrial DNA. T Itagaki K Sakaguchi K Terasaki O Sasaki S Yoshihara T Van Dung, Parasitol Int 2009 58 81 85 10.1016/j.parint.2008.11.003 19087891
18. Molecular evidence of natural hybridization between Fasciola hepatica and F. gigantica. T Agatsuma Y Arakawa M Iwagami Y Honzako U Cahyaningsih SY Kang SJ Hong, Parasitol Int 2000 49 231 238 10.1016/S1383-5769(00)00051-9 11426578 (Pubitemid 30665647)
19. Human fascioliasis and the presence of hybrid/introgressed forms of Fasciola hepatica and Fasciola gigantica in Vietnam. TH Le NV De T Agatsuma NT Thi QD Nguyen DP McManus D Blair, Int J Parasitol 2008 38 725 730 10.1016/j.ijpara.2007.10.003 18031748 (Pubitemid 351452025)
20. Phenotypic analysis of adults of Fasciola hepatica, Fasciola gigantica and intermediate forms from the endemic region of Gilan, Iran. K Ashrafi MA Valero M Panova MV Periago J Massoud S Mas-Coma, Parasitol Int 2006 55 249 260 10.1016/j.parint.2006.06.003 16901748 (Pubitemid 44636311)
21. Sequence analysis of the first internal transcribed spacer of rDNA supports the existence of the intermediate Fasciola between F. hepatica and F. gigantica in mainland China. RQ Lin SJ Dong K Nie CR Wang HQ Song AX Li WY Huang XQ Zhu, Parasitol Res 2007 101 813 817 10.1007/s00436-007-0512-0 17356892 (Pubitemid 47101413)
22. Characterisation of Fasciola species from mainland China by ITS-2 ribosomal DNA sequence. WY Huang B He CR Wang XQ Zhu, Vet Parasitol 2004 120 75 83 10.1016/j.vetpar.2003.12.006 15019145 (Pubitemid 38270385)
23. Mitochondrial DNA and nuclear DNA indicate that the Japanese Fasciola species is F. gigantica. K Hashimoto T Watanobe CX Liu I Init D Blair S Ohnishi T Agatsuma, Parasitol Res 1997 83 220 225 9089716 (Pubitemid 27138124)
24. The use of nuclear ribosomal DNA markers for the identification of bursate nematodes (order Strongylida) and for the diagnosis of infections. NB Chilton, Anim Health Res Rev 2004 5 173 187 10.1079/AHR200497 15984323
25. Genetic characterisation of Fasciola samples from different host species and geographical localities revealed the existence of F. hepatica and F. gigantica in Niger. H Ali L Ai HQ Song S Ali RQ Lin B Seyni G Issa XQ Zhu, Parasitol Res 2008 102 1021 1024 10.1007/s00436-007-0870-7 18183422
26. Use of sequence motifs as barcodes and secondary structures of internal transcribed spacer 2 (ITS2, rDNA) for identification of the Indian liver fluke, Fasciola (Trematoda: Fasciolidae). PK Prasad V Tandon DK Biswal LM Goswami A Chatterjee, Bioinformation 2009 3 314 320 19294000
27. Comparison of the second internal transcribed spacer (ribosomal DNA) from populations and species of Fasciolidae (Digenea). RD Adlard SC Barker D Blair TH Cribb, Int J Parasitol 1993 23 423 425 10.1016/0020-7519(93)90022-Q 8359995
28. Genetic differentiation in Eastern European and Western Asian populations of the liver fluke, Fasciola hepatica, as revealed by mitochondrial nad1 and cox1 genes. SK Semyenova EV Morozova GG Chrisanfova VV Gorokhov IA Arkhipov AS Moskvin SO Movsessyan AP Ryskov, J Parasitol 2006 92 525 530 10.1645/GE-673R.1 16883995 (Pubitemid 44141258)
29. Animal mitochondrial genomes. JL Boore, Nucleic Acids Res 1999 27 1767 1780 10.1093/nar/27.8.1767 10101183 (Pubitemid 29209617)
30. Complete DNA sequence and gene organization of the mitochondrial genome of the liverfluke, Fasciola hepatica L. (Platyhelminthes; Trematoda). TH Le D Blair DP McManus, Parasitology 2001 123 609 621 11814048 (Pubitemid 34084483)
31. Mitochondrial DNA as a marker of molecular diversity: a reappraisal. N Galtier B Nabholz S Glémin GD Hurst, Mol Ecol 2009 18 4541 4550 10.1111/j.1365-294X.2009.04380.x 19821901
32. Variability of the mitochondrial genome in mammals at the inter-species/intra-species boundary. M Santamaria C Lanave S Vicario C Saccone, Biol Chem 2007 388 943 946 10.1515/BC.2007.121 17696778 (Pubitemid 47258543)
33. Electrophoretic analysis of sequence variability in three mitochondrial DNA regions for Ascaridoid parasites of human and animal health significance. MW Li RQ Lin HQ Song RA Sani XY Wu XQ Zhu, Electrophoresis 2008 29 2912 2917 18546167 (Pubitemid 352006125)
34. First phenotypic description of Fasciola hepatica/Fasciola gigantica intermediate forms from the human endemic area of the Nile Delta, Egypt. MV Periago MA Valero SM El K Ashrafi WA El MY Mohamed M Desquesnes F Curtale S Mas-Coma, Infect Genet Evol 2008 8 51 58 10.1016/j.meegid.2007.10.001 18006385 (Pubitemid 350225339)
35. Identification of Anisakid nematodes with zoonotic potential from Europe and China by single-strand conformation polymorphism analysis of nuclear ribosomal DNA. XQ Zhu M Podolska JS Liu HQ Yu HH Chen ZX Lin CB Luo HQ Song RQ Lin, Parasitol Res 2007 101 1703 1707 10.1007/s00436-007-0699-0 17694403 (Pubitemid 47524847)
36. Molecular approaches for studying Ascaridoid nematodes with zoonotic potential, with an emphasis on Toxocara species. XQ Zhu RB Gasser NB Chilton DE Jacobs, J Helminthol 2001 75 101 108 11520432 (Pubitemid 32963639)
37. Molecular tools-advances, opportunities and prospects. RB Gasser, Vet Parasitol 2006 136 69 89 10.1016/j.vetpar.2005.12.002 16457951
38. Characterization of Fasciola samples from different host species and geographical localities in Spain by sequences of internal transcribed spacers of rDNA. S Alasaad CQ Huang QY Li JE Granados C Garcia-Romero JM Perez XQ Zhu, Parasitol Res 2007 101 1245 1250 10.1007/s00436-007-0628-2 17610081 (Pubitemid 47389426)
39. Genetic heterogeneity of Fasciola hepatica isolates in the northwest of Spain. RM Vara-Del H Villa M Martinez-Valladares FA Rojo-Vazquez, Parasitol Res 2007 101 1003 1006 10.1007/s00436-007-0574-z 17530479 (Pubitemid 47228809)
40. Analysis of expressed sequence tags (ESTs) from Agrostis species obtained using sequence related amplified polymorphism. G Dinler H Budak, Biochem Genet 2008 46 663 676 10.1007/s10528-008-9181-7 18726683
41. Molecular characterization of tree peony Germplasm using sequence-related amplified polymorphism markers. XY Han LS Wang QY Shu ZA Liu SX Xu T Tetsumura, Biochem Genet 2008 46 162 179 10.1007/s10528-007-9140-8 18224436
42. Genetic variability among Fasciola hepatica samples from different host species and geographical localities in Spain revealed by the novel SRAP marker. S Alasaad QY Li RQ Lin P Martin-Atance JE Granados P Diez-Banos JM Perez XQ Zhu, Parasitol Res 2008 103 181 186 10.1007/s00436-008-0952-1 18368421
43. Elucidation of genetic variability among different isolates of Fasciola gigantica (giant liver fluke) using random-amplified polymorphic DNA polymerase chain reaction. KR Gunasekar AK Tewari C Sreekumar SC Gupta JR Rao, Parasitol Res 2008 103 1075 1081 10.1007/s00436-008-1095-0 18626662
44. Evidence for multiple mitochondrial lineages of Fasciola hepatica (liver fluke) within infrapopulations from cattle and sheep. SM Walker PA Prodohl HL Fletcher RE Hanna V Kantzoura EM Hoey A Trudgett, Parasitol Res 2007 101 117 125 10.1007/s00436-006-0440-4 17216485 (Pubitemid 46669260)
45. A PCR-RFLP assay for the distinction between Fasciola hepatica and Fasciola gigantica. A Marcilla MD Bargues S Mas-Coma, Mol Cell Probes 2002 16 327 333 10.1006/mcpr.2002.0429 12477436 (Pubitemid 35397435)
46. A fluorescence-based polymerase chain reaction-linked single-strand conformation polymorphism (F-PCR-SSCP) assay for the identification of Fasciola spp. S Alasaad RC Soriguer M Abu-Madi A El Behairy PD Bãos A Píriz J Fickel XQ Zhu, Parasitol Res 2011 108 1513 1517 10.1007/s00436-010-2209-z 21170657
47. Specific PCR-based assays for the identification of Fasciola species: their development, evaluation and potential usefulness in prevalence surveys. L Ai SJ Dong WY Zhang HM Elsheikha YS Mahmmod RQ Lin ZG Yuan YL Shi WY Huang XQ Zhu, Ann Trop Med Parasitol 2010 104 65 72 10.1179/136485910X12607012373713 20149293
48. DNA probes for the detection of Fasciola hepatica in snails. V Heussler H Kaufmann D Strahm J Liz D Dobbelaere, Mol Cell Probes 1993 7 261 267 10.1006/mcpr.1993.1039 8232342 (Pubitemid 23253803)
49. Detection of Fasciola gigantica infection in snails by polymerase chain reaction. R Velusamy BP Singh OK Raina, Vet Parasitol 2004 120 85 90 10.1016/j.vetpar.2003.11.009 15019146 (Pubitemid 38270386)
50. PCR diagnosis of Fasciola hepatica in field-collected Lymnaea columella and Lymnaea viatrix snails. MA Cucher S Carnevale L Prepelitchi JH Labbe C Wisnivesky-Colli, Vet Parasitol 2006 137 74 82 10.1016/j.vetpar.2005.12.013 16427203 (Pubitemid 43384029)
51. A repetitive DNA probe for the sensitive detection of Fasciola hepatica infected snails. RM Kaplan JB Dame GR Reddy CH Courtney, Int J Parasitol 1995 25 601 610 10.1016/0020-7519(94)00159-L 7635638
52. Isolation and detection of Fasciola hepatica DNA in Lymnaea viatrix from formalin-fixed and paraffin-embedded tissues through multiplex-PCR. KG Magalhaes LK Jannotti-Passos RL Caldeira ME Berne G Muller OS Carvalho HL Lenzi, Vet Parasitol 2008 152 333 338 10.1016/j.vetpar.2007.12.019 18243563
53. PCR-based differentiation of Fasciola species (Trematoda: Fasciolidae), using primers based on RAPD-derived sequences. JW McGarry PL Ortiz JE Hodgkinson I Goreish DJ Williams, Ann Trop Med Parasitol 2007 101 415 421 10.1179/136485907X176508 17550647 (Pubitemid 47488130)
54. A TaqMan real-time PCR-based assay for the identification of Fasciola spp. S Alasaad RC Soriguer M Abu-Madi BA El PD Banos A Piriz J Fickel XQ Zhu, Vet Parasitol 2011 179 266 271 10.1016/j.vetpar.2011.01.059 21334813
55. Prevalence of Fasciola hepatica in the intermediate host Lymnaea truncatula detected by real time TaqMan PCR in populations from 70 Swiss farms with cattle husbandry. G Schweizer ML Meli PR Torgerson H Lutz P Deplazes U Braun, Vet Parasitol 2007 150 164 169 10.1016/j.vetpar.2007.08.006 17935887 (Pubitemid 350026674)
56. Loop-mediated isothermal amplification of DNA. T Notomi H Okayama H Masubuchi T Yonekawa K Watanabe N Amino T Hase, Nucleic Acids Res 2000 28 63 10.1093/nar/28.12.e63 10871386
57. Accelerated reaction by loop-mediated isothermal amplification using loop primers. K Nagamine T Hase T Notomi, Mol Cell Probes 2002 16 223 229 10.1006/mcpr.2002.0415 12144774
58. Rapid identification and differentiation of Fasciola hepatica and Fasciola gigantica by a loop-mediated isothermal amplification (LAMP) assay. L Ai C Li HM Elsheikha SJ Hong JX Chen SH Chen X Li XQ Cai MX Chen XQ Zhu, Vet Parasitol 2010 174 228 233 10.1016/j.vetpar.2010.09.005 20933335
59. Isolation and characterization of microsatellite markers in the liver fluke (Fasciola hepatica). S Hurtrez-Boussés P Durand R Jabbour-Zahabr JF Guegan C Meunier MD Bargues S Mas-Coma F Renaud, Mol Ecol Notes 2004 4 689 690 10.1111/j.1471-8286.2004.00786.x (Pubitemid 39569209)
60. A portrait of the transcriptome of the neglected trematode, Fasciola gigantica-biological and biotechnological implications. ND Young AR Jex C Cantacessi RS Hall BE Campbell TW Spithill S Tangkawattana P Tangkawattana T Laha RB Gasser, PLoS Negl Trop Dis 2011 5 1004 10.1371/journal.pntd.0001004 21408104
61. An integrated transcriptomics and proteomics analysis of the secretome of the helminth pathogen Fasciola hepatica: proteins associated with invasion and infection of the mammalian host. MW Robinson R Menon SM Donnelly JP Dalton S Ranganathan, Mol Cell Proteomics 2009 8 1891 1907 10.1074/mcp.M900045-MCP200 19443417
62. Proteomic analysis of embryonic Fasciola hepatica: characterization and antigenic potential of a developmentally regulated heat shock protein. JV Moxon EJ LaCourse HA Wright S Perally MC Prescott JL Gillard J Barrett JV Hamilton PM Brophy, Vet Parasitol 2010 169 62 75 10.1016/j.vetpar.2009.12.031 20089359