DNA amplification on chromosome 13q31.1 correlated with poor prognosis in colorectal cancer

Clinical and Experimental Medicine

Volumn 11, Issue 2, 2011, Pages 97-103

  Sareeboot, Tawiwan ^a   Punyarit, Phaibul ^b   Petmitr, Songsak ^a  

^a MAHIDOL UNIVERSITY   (Thailand)

^b Institute of Pathology   (Thailand)

Author keywords

13q31.1; Colorectal cancer; Prognostic value

Indexed keywords

ADULT; AGED; ARTICLE; CANCER SURVIVAL; CHROMOSOME 10Q; CHROMOSOME 11Q; CHROMOSOME 13Q; CHROMOSOME 1Q; CHROMOSOME 4Q; CHROMOSOME 9Q; CLINICAL ARTICLE; COLORECTAL CANCER; DNA EXTRACTION; DNA SEQUENCE; FEMALE; GENE AMPLIFICATION; GENE IDENTIFICATION; HUMAN; HUMAN TISSUE; MALE; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROGNOSIS; REAL TIME POLYMERASE CHAIN REACTION; SURVIVAL TIME;

ADULT; AGED; AGED, 80 AND OVER; CHROMOSOMES, HUMAN, PAIR 13; COLORECTAL NEOPLASMS; FEMALE; GENETIC MARKERS; HUMANS; MALE; MIDDLE AGED; POLYMORPHISM, GENETIC; PROGNOSIS; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; SURVIVAL ANALYSIS;

EID: 79958135938     PISSN: 15918890     EISSN: 15919528     Source Type: Journal    
DOI: 10.1007/s10238-010-0107-4     Document Type: Article

References (28)

1. DM Parkin F Bray J Ferlay P Pisani 2005 (2002) Global cancer statistics, CA cancer J Clin 55 74 108
2. Srisukho S, Srivatanakul P, Sumitsawan Y (2007) Colon and rectum. In: Khuhaprema T et al (eds) Cancer in Thailand vol IV, 1998-2000. Bangkok Medical Publisher, Bangkok, pp 34-35
3. M Ilyas J Straub IPM Tomlinson WF Bodmer 1999 Genetic pathways in colorectal and other cancers Eur J Cancer 35 1986 2002 10711241 10.1016/S0959-8049(99)00298-1 1:CAS:528:DC%2BD3cXjtVyntA%3D%3D (Pubitemid 30026220)
4. SJ Baker AC Preisinger JM Jessup, et al. 1990 p53 Mutations occur in combination with 17p allelic deletions as late events in colorectal tumorigenesis Cancer Res 50 7717 7722 2253215 1:CAS:528:DyaK3MXhvVOnsQ%3D%3D
5. P Galiatsatos WD Foulkes 2006 Familial adenomatous polyposis Am J Gastroenterol 101 385 398 16454848 10.1111/j.1572-0241.2006.00375.x (Pubitemid 43381685)
6. DC Chung 2000 The genetic basis of colorectal cancer: insights into critical pathways of tumorigenesis Gastroenterol 119 854 865 10.1053/gast.2000.16507 1:CAS:528:DC%2BD3cXmslSrs7o%3D
7. P Chaksangchaichot P Punyarit S Petmitr 2007 Novel hMSH2, hMSH6 and hMLH1 gene mutations and microsatellite instability in sporadic colorectal cancer J Cancer Res Clin Oncol 133 65 70 16902769 10.1007/s00432-006-0147-z 1:CAS:528:DC%2BD28Xht1elsbvF (Pubitemid 44832781)
8. RJ Micthell SM Farrington MG Dunlop H Campbell 2002 Mismatch repair genes hMLH1 and hMSH2 and colorectal cancer: a HuGE review Am J Epidemiol 156 885 902 10.1093/aje/kwf139 (Pubitemid 35304069)
9. J Welsh M McClelland 1990 Fingerprinting genomes using PCR with arbitrary primers Nucleic Acids Res 18 7213 7218 2259619 10.1093/nar/18.24.7213 1:CAS:528:DyaK3MXls12jsQ%3D%3D (Pubitemid 120006020)
10. JG Williams AR Kubelik KJ Livak JA Rafalski SV Tingey 1990 DNA polymorphisms amplified by arbitrary primers are useful as genetic markers Nucleic Acids Res 18 6531 6535 1979162 10.1093/nar/18.22.6531 1:CAS:528:DyaK3MXjslWmsA%3D%3D (Pubitemid 20386578)
11. JM Navarro JL Jorcano 1999 The use of arbitrarily primed polymerase chain reaction in cancer research Electrophoresis 20 283 290 10197435 10.1002/(SICI)1522-2683(19990201)20:2<283::AID-ELPS283>3.0.CO;2-N 1:CAS:528:DyaK1MXit1ansLc%3D (Pubitemid 29125015)
12. Rosai J (1996) Ackerman's surgical pathology, 8th edn, vol II, Mosby Year Book Inc. USA
13. SA Miller DD Dykes HF Polesky 1988 A simple salting out procedure for extracting DNA from human nucleated cells Nucleic Acids Res 16 1215 3344216 10.1093/nar/16.3.1215 1:CAS:528:DyaL1cXhsVKlsrs%3D
14. P Sealee S Wongkham V Bhudhisawasdi B Sripa S Chariyalertsak S Petmitr 2008 Loss on chromosome 5q34 is associated with poor prognosis in hepatocellular carcinoma J Cancer Res Clin Oncol 134 1135 1141 10.1007/s00432-008-0379-1
15. KJ Livak TD Schmittgen 2001 Analysis of relative gene expression data using real- time quantitative PCR and the 2(Delta Delta C(T)) method Methods 25 402 408 11846609 10.1006/meth.2001.1262 1:CAS:528:DC%2BD38XhtFelt7s%3D (Pubitemid 34164012)
16. JR Jass 2006 Colorectal cancer: a multipathway diseases Crit Rev Oncog 12 273 287 17425506
17. A Kallioniemi OP Kallioniemi D Sudar, et al. 1992 Comparative genomic hybridization for molecular cytogenetic analysis in solid tumors Science 258 818 821 1359641 10.1126/science.1359641 1:CAS:528:DyaK3sXhs1Gn
18. A Oga S Kawauchi H Izumi LX Ping T Furuya K Susuki 2002 New perspectives for tumor pathology provided by comparative genomic hybridization In J Clin Oncol 7 133 137 10.1007/s101470200019 1:CAS:528:DC%2BD38XlslKru7Y%3D (Pubitemid 34733477)
19. XP Liu S Kawauchi A Oga T Sato K Ikemoto E Ikeda K Sasaki 2007 Chromosomal aberrations detected by comparative chromosomal hybridization predict outcome in patients with colorectal carcinoma Oncol Rep 17 261 267 17143507 1:CAS:528:DC%2BD2sXhtFagur4%3D
20. C de Juan P Iniesta FJ Vega, et al. 1998 Prognostic value of genomic damage in non-small-cell lung cancer Br J Cancer 77 1971 1977 9667677 10.1038/bjc.1998.327 (Pubitemid 28254642)
21. T Maeda A Jikko H Hiranuma H Fuchihata 1999 Analysis of genome instability in squamous cell carcinoma of the head and neck using the random amplified polymorphic DNA method Cancer Lett 138 183 188 10378791 10.1016/S0304-3835(99)00004-X 1:CAS:528:DyaK1MXjtFWnu74%3D (Pubitemid 29189202)
22. U Chuensumran S Wongkham C Pairojkul S Chauin S Petmitr 2007 Prognostic value of DNA alterations on chromosome 17p13.2 for intrahepatic cholangiocarcinoma World J Gastroenterol 13 2986 2991 17589952 1:CAS:528:DC%2BD2sXot1Squrg%3D (Pubitemid 47028889)
23. Y-W Lin J-C Sheu C-H Chen, et al. 1999 Loss of heterozygosity at chromosome 13q in hepatocellular carcinoma: identification of three independent regions Eur J Cancer 35 1730 1734 10674021 10.1016/S0959-8049(99)00205-1 1:STN:280:DC%2BD3c7jvV2ktA%3D%3D (Pubitemid 30050648)
24. MG Sabbir A Roy S Mandal A Dam S Roychoudhury CK Panda 2006 Deletion mapping of chromosome 13q in head and neck squamous cell carcinoma in Indian patients: correlation with prognosis of the tumour Int J Exp Path 87 151 161 10.1111/j.0959-9673.2006.00467.x 1:CAS:528:DC%2BD28XkvVOktb4%3D
25. AT Gordon C Brinkschmidt J Anderson, et al. 2000 A novel and consistent amplicon at 13q31 associated with alveolar rhabdomyosarcoma Genes Chromosomes Cancer 28 220 226 10825007 10.1002/(SICI)1098-2264(200006)28:2<220::AID- GCC11>3.0.CO;2-T 1:CAS:528:DC%2BD3cXjsV2ru7Y%3D (Pubitemid 30247000)
26. H Schmidt F Bartel M Kappler, et al. 2005 Gains of 13q are correlated with a poor prognosis in liposarcoma Mod Pathol 18 638 644 15540119 10.1038/modpathol.3800326 1:CAS:528:DC%2BD2MXktlajtLg%3D (Pubitemid 40676374)
27. W Yu J Inoue I Imoto Y Matsuo A Karpas J Inazawa 2003 GPC5 is a possible target for the 13q31-32 amplification detected in lymphoma cell line J Hum Genet 48 331 335 12721791 1:CAS:528:DC%2BD3sXltVWgs7k%3D (Pubitemid 36834363)
28. A Ota H Tagawa S Karnan S Tsuzuki A Karpas S Kira Y Yoshida M Seto 2004 Identification and characterization of a novel gene, C13orf25, as a target for 13q31-32 amplification in malignant lymphoma Cancer Res 64 3087 3095 15126345 10.1158/0008-5472.CAN-03-3773 1:CAS:528:DC%2BD2cXjs1ehtr0%3D (Pubitemid 38581408)