RuleBender: A visual interface for rule-based modeling

Bioinformatics

Volumn 27, Issue 12, 2011, Pages 1721-1722

  Xu, Wen ^a   Smith, Adam M ^a   Faeder, James R ^b   Marai, G Elisabeta ^a  

^a University of Pittsburgh   (United States)

^b UNIVERSITY OF PITTSBURGH SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOCHEMISTRY; BIOLOGICAL MODEL; COMPUTER GRAPHICS; COMPUTER INTERFACE; COMPUTER PROGRAM;

BIOCHEMICAL PROCESSES; COMPUTER GRAPHICS; MODELS, BIOLOGICAL; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 79958124076     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr197     Document Type: Article

References (6)

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2. Colvin,J. et al. (2010) RuleMonkey: software for stochastic simulation of rule-based models. BMC Bioinformatics, 11, 404.
3. Danos,V. et al. (2007) Scalable simulation of cellular signaling networks. Lect. Notes Comput. Sci., 4807, 139-157.
4. Faeder,J.R. et al. (2009) Rule-based modeling of biochemical systems with BioNetGen. Methods Mol. Biol., 500, 113-168.
5. Feret,J. et al. (2009) Internal coarse-graining of molecular systems. Proc. Natl Acad. Sci. USA, 106, 6453-6458.
6. Sneddon,M.W. et al. (2011) Efficient modeling, simulation and coarse-graining of biological complexity with NFsim. Nat. Methods, 8, 177-183.