-
1
-
-
25844448847
-
-
3rd ed., international student version Wiley, New York
-
Voet, D., Voet, J. G., and Pratt, C. W. (2008) Principles of Biochemistry, 3rd ed., international student version, pp 817-847, Wiley, New York.
-
(2008)
Principles of Biochemistry
, pp. 817-847
-
-
Voet, D.1
Voet, J.G.2
Pratt, C.W.3
-
2
-
-
0014853092
-
Pyrimidine metabolism in microorganisms
-
O'Donovan, G., and Neuhard, J. (1970)Pyrimidine metabolism in microorganisms. Bacteriol. Rev. 34, 278-343.
-
(1970)
Bacteriol. Rev.
, vol.34
, pp. 278-343
-
-
O'Donovan, G.1
Neuhard, J.2
-
3
-
-
44949214942
-
Regulation of pyrimidine biosynthetic gene expression in bacteria: Repression without repressors
-
DOI 10.1128/MMBR.00001-08
-
Turnbough, C. L. J., and Switzer, R. L. (2008)Regulation of pyrimidine biosynthetic gene expression in bacteria: Repression without repressors. Microbiol. Mol. Biol. Rev. 72, 266-300. (Pubitemid 351822293)
-
(2008)
Microbiology and Molecular Biology Reviews
, vol.72
, Issue.2
, pp. 266-300
-
-
Turnbough Jr., C.L.1
Switzer, R.L.2
-
4
-
-
0004988673
-
Feedback onhibition of uridine kinase by cytidine triphosphate and uridine triphosphate
-
Anderson, E. P., and Brockman, R. W. (1964)Feedback onhibition of uridine kinase by cytidine triphosphate and uridine triphosphate. Biochim. Biophys. Acta 91, 380-386.
-
(1964)
Biochim. Biophys. Acta
, vol.91
, pp. 380-386
-
-
Anderson, E.P.1
Brockman, R.W.2
-
5
-
-
0014531691
-
Relationship between uridine kinase activity and rate of incorporation of uridine into acid-soluble pool and into RNA during growth cycle of rat hepatoma cells
-
Plagemann, P. G., Ward, G. A., Mahy, B. W., and Korbecki, M. (1969)Relationship between uridine kinase activity and rate of incorporation of uridine into acid-soluble pool and into RNA during growth cycle of rat hepatoma cells. J. Cell. Physiol. 73, 233-249.
-
(1969)
J. Cell. Physiol.
, vol.73
, pp. 233-249
-
-
Plagemann, P.G.1
Ward, G.A.2
Mahy, B.W.3
Korbecki, M.4
-
6
-
-
0010625436
-
Enzymes of uracil metabolism in tissues with different growth characteristics
-
Sköld, O. (1960)Enzymes of uracil metabolism in tissues with different growth characteristics. Biochim. Biophys. Acta 44, 1-12.
-
(1960)
Biochim. Biophys. Acta
, vol.44
, pp. 1-12
-
-
Sköld, O.1
-
7
-
-
33846129777
-
The phosphofructokinase-B (MJ0406) from Methanocaldococcus jannaschii represents a nucleoside kinase with a broad substrate specificity
-
DOI 10.1007/s00792-006-0018-1
-
Hansen, T., Arnfors, L., Ladenstein, R., and Schönheit, P. (2007) The phosphofructokinase-B (MJ0406) from Methanocaldococcus jannaschii represents a nucleoside kinase with a broad substrate specificity. Extremophiles 11, 105-114. (Pubitemid 46089634)
-
(2007)
Extremophiles
, vol.11
, Issue.1
, pp. 105-114
-
-
Hansen, T.1
Arnfors, L.2
Ladenstein, R.3
Schonheit, P.4
-
8
-
-
64349104090
-
Extending thymidine kinase activity to the catalytic repertoire of human deoxycytidine kinase
-
Hazra, S., Sabini, E., Ort, S., Konrad, M., and Lavie, A. (2009) Extending thymidine kinase activity to the catalytic repertoire of human deoxycytidine kinase. Biochemistry 48, 1256-1263.
-
(2009)
Biochemistry
, vol.48
, pp. 1256-1263
-
-
Hazra, S.1
Sabini, E.2
Ort, S.3
Konrad, M.4
Lavie, A.5
-
9
-
-
42349087011
-
Systematic exploration of active site mutations on human deoxycytidine kinase substrate specificity
-
DOI 10.1021/bi800157e
-
Iyidogan, P., and Lutz, S. (2008)Systematic exploration of active site mutations on human deoxycytidine kinase substrate specificity. Biochemistry 47, 4711-4720. (Pubitemid 351555492)
-
(2008)
Biochemistry
, vol.47
, Issue.16
, pp. 4711-4720
-
-
Iyidogan, P.1
Lutz, S.2
-
10
-
-
0037007213
-
A few amino acid substitutions can convert deoxyribonucleoside kinase specificity from pyrimidines to purines
-
DOI 10.1093/emboj/21.7.1873
-
Knecht, W., Sandrini, M., Johansson, K., Eklund, H., Munch- Petersen, B., and Piskur, J. (2002)A few amino acid substitutions can convert deoxyribonucleoside kinase specificity from pyrimidines to purines. EMBO J. 21, 1873-1880. (Pubitemid 34614643)
-
(2002)
EMBO Journal
, vol.21
, Issue.7
, pp. 1873-1880
-
-
Knecht, W.1
Sandrini, M.P.B.2
Johansson, K.3
Eklund, H.4
Munch-Petersen, B.5
Piskur, J.6
-
11
-
-
0033762813
-
Structural genomics projects in Japan
-
Yokoyama, S., Hirota, H., Kigawa, T., Yabuki, T., Shirouzu, M., Terada, T., Ito, Y., Matsuo, Y., Kuroda, Y., Nishimura, Y., Kyogoku, Y., Miki, K., Masui, R., and Kuramitsu, S. (2000)Structural genomics projects in Japan. Nat. Struct. Biol. 7, 943-945.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 943-945
-
-
Yokoyama, S.1
Hirota, H.2
Kigawa, T.3
Yabuki, T.4
Shirouzu, M.5
Terada, T.6
Ito, Y.7
Matsuo, Y.8
Kuroda, Y.9
Nishimura, Y.10
Kyogoku, Y.11
Miki, K.12
Masui, R.13
Kuramitsu, S.14
-
12
-
-
2342600247
-
Structural basis for the specificity, catalysis, and regulation of human uridine-cytidine kinase
-
DOI 10.1016/j.str.2004.02.038, PII S0969212604001212
-
Suzuki, N. N., Koizumi, K., Fukushima, M., Matsuda, A., and Inagaki, F. (2004)Structural basis for the specificity, catalysis, and regulation of human uridine-cytidine kinase. Structure 12, 751-764. (Pubitemid 38595764)
-
(2004)
Structure
, vol.12
, Issue.5
, pp. 751-764
-
-
Suzuki, N.N.1
Koizumi, K.2
Fukushima, M.3
Matsuda, A.4
Inagaki, F.5
-
13
-
-
24044484438
-
Structure of human uridine-cytidine kinase 2 determined by SIRAS using a rotating-anode X-ray generator and a single samarium derivative
-
DOI 10.1107/S0907444904032937
-
Appleby, T., Larson, G., Cheney, I., Walker, H., Wu, J., Zhong, W., Hong, Z., and Yao, N. (2005)Structure of human uridine-cytidine kinase 2 determined by SIRAS using a rotating-anode X-ray generator and a single samarium derivative. Acta Crystallogr. Sect. D Biol. Crystallogr. 61, 278-284. (Pubitemid 43970056)
-
(2005)
Acta Crystallographica Section D: Biological Crystallography
, vol.61
, Issue.3
, pp. 278-284
-
-
Appleby, T.C.1
Larson, G.2
Cheney, I.W.3
Walker, H.4
Wu, J.Z.5
Zhong, W.6
Hong, Z.7
Yao, N.8
-
14
-
-
0025366034
-
Pre-steady-state kinetics of Escherichia coli aspartate aminotransferase catalyzed reactions and thermodynamic aspects of its substrate specificity
-
DOI 10.1021/bi00475a010
-
Kuramitsu, S., Hiromi, K., Hayashi, H., Morino, Y., and Kagamiyama, H. (1990)Pre-steady-state kinetics of Escherichia coli aspartate aminotransferase catalyzed reactions and thermodynamic aspects of its substrate specificity. Biochemistry 29, 5469-5476. (Pubitemid 20202271)
-
(1990)
Biochemistry
, vol.29
, Issue.23
, pp. 5469-5476
-
-
Kuramitsu, S.1
Hiromi, K.2
Hayashi, H.3
Morino, Y.4
Kagamiyama, H.5
-
15
-
-
0028794108
-
An ion-pairing highperformance liquid chromatographic method for the direct simultaneous determination of nucleotides, deoxynucleotides, nicotinic coenzymes, oxypurines, nucleosides, and bases in perchloric acid cell extracts
-
Di Pierro, D., Tavazzi, B., Perno, C. F., Bartolini, M., Balestra, E., Calió, R., Giardina, B., and Lazzarino, G. (1995)An ion-pairing highperformance liquid chromatographic method for the direct simultaneous determination of nucleotides, deoxynucleotides, nicotinic coenzymes, oxypurines, nucleosides, and bases in perchloric acid cell extracts. Anal. Biochem. 231, 407-412.
-
(1995)
Anal. Biochem.
, vol.231
, pp. 407-412
-
-
Di Pierro, D.1
Tavazzi, B.2
Perno, C.F.3
Bartolini, M.4
Balestra, E.5
Calió, R.6
Giardina, B.7
Lazzarino, G.8
-
16
-
-
0017869256
-
Guanylate kinases from human erythrocytes, hog brain, and rat liver
-
Agarwal, K. C., Miech, R. P., and Parks, R. E., Jr. (1978) Guanylate kinases from human erythrocytes, hog brain, and rat liver. Methods Enzymol. 51, 483-490.
-
(1978)
Methods Enzymol.
, vol.51
, pp. 483-490
-
-
Agarwal, K.C.1
Miech, R.P.2
Parks Jr., R.E.3
-
17
-
-
46249107131
-
Crystallization screening test for the whole-cell project on Thermus thermophilus HB8
-
DOI 10.1107/S1744309108013572, PII S1744309108013572
-
Iino, H., Naitow, H., Nakamura, Y., Nakagawa, N., Agari, Y., Kanagawa,M., Ebihara, A., Shinkai, A., Sugahara,M., Miyano,M., Kamiya, N., Yokoyama, S., Hirotsu, K., and Kuramitsu, S. (2008)Crystallization screening test for the whole-cell project on Thermus thermophilus HB8. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 64, 487-491. (Pubitemid 351999134)
-
(2008)
Acta Crystallographica Section F: Structural Biology and Crystallization Communications
, vol.64
, Issue.6
, pp. 487-491
-
-
Iino, H.1
Naitow, H.2
Nakamura, Y.3
Nakagawa, N.4
Agari, Y.5
Kanagawa, M.6
Ebihara, A.7
Shinkai, A.8
Sugahara, M.9
Miyano, M.10
Kamiya, N.11
Yokoyama, S.12
Hirotsu, K.13
Kuramitsu, S.14
-
18
-
-
33747670167
-
RIKEN structural genomics beamlines at the SPring-8; high throughput protein crystallography with automated beamline operation
-
DOI 10.1007/s10969-005-9005-5
-
Ueno, G., Kanda, H., Hirose, R., Ida, K., Kumasaka, T., and Yamamoto, M. (2006)RIKEN structural genomics beamlines at the SPring-8; high throughput protein crystallography with automated beamline operation. J. Struct. Funct. Genomics 7, 15-22. (Pubitemid 44273859)
-
(2006)
Journal of Structural and Functional Genomics
, vol.7
, Issue.1
, pp. 15-22
-
-
Ueno, G.1
Kanda, H.2
Hirose, R.3
Ida, K.4
Kumasaka, T.5
Yamamoto, M.6
-
19
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
DOI 10.1016/S0076-6879(97)76066-X
-
Otwinowski, Z., and Minor, W. (1997)Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326. (Pubitemid 27085611)
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
20
-
-
0000560808
-
MOLREP: An Automated Program for Molecular Replacement
-
Vagin, A., and Teplyakov, A. (1997)MOLREP: An Automated Program for Molecular Replacement. J. Appl. Crystallogr. 30, 1022-1025. (Pubitemid 127485985)
-
(1997)
Journal of Applied Crystallography
, vol.30
, Issue.6
, pp. 1022-1025
-
-
Vagin, A.1
Teplyakov, A.2
-
21
-
-
0002705842
-
A visual protein crystallographic software system for X11/Xview
-
McRee, D. E. (1992)A visual protein crystallographic software system for X11/Xview. J. Mol. Graph. 10, 44-46.
-
(1992)
J. Mol. Graph.
, vol.10
, pp. 44-46
-
-
McRee, D.E.1
-
22
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998)Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921.
-
(1998)
Acta Crystallogr. Sect. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
23
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993)PROCHECK: A program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26, 283-291.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
24
-
-
2542446144
-
The Nudix hydrolase Ndx1 from Thermus thermophilus HB8 is a diadenosine hexaphosphate hydrolase with a novel activity
-
DOI 10.1074/jbc.M312018200
-
Iwai, T., Kuramitsu, S., and Masui, R. (2004)The Nudix hydrolase Ndx1 from Thermus thermophilus HB8 is a diadenosine hexaphosphate hydrolase with a novel activity. J. Biol. Chem. 279, 21732-21739. (Pubitemid 38679359)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.21
, pp. 21732-21739
-
-
Iwai, T.1
Kuramitsu, S.2
Masui, R.3
-
25
-
-
0017795679
-
Uridine-cytidine kinase from Escherichia coli
-
Valentin-Hansen, P. (1978)Uridine-cytidine kinase from Escherichia coli. Methods Enzymol. 51, 308-314.
-
(1978)
Methods Enzymol.
, vol.51
, pp. 308-314
-
-
Valentin-Hansen, P.1
-
26
-
-
0016771960
-
Uridine cytidine kinase. Kinetic studies and reaction mechanism
-
Liacouras, A. S.,Garvey,T.Q., III,Millar, and Anderson, F. K. E. P. (1975)Uridine cytidine kinase. Kinetic studies and reaction mechanism. Arch. Biochem. Biophys. 168, 74-80.
-
(1975)
Arch. Biochem. Biophys.
, vol.168
, pp. 74-80
-
-
Liacouras, A.S.1
Garvey III, T.Q.2
Millar3
Anderson, F.K.E.P.4
-
27
-
-
40349106220
-
Insights into different dependence of dNTP triphosphohydrolase on metal ion species from intracellular ion concentrations in Thermus thermophilus
-
Kondo,N.,Nishikubo, T.,Wakamatsu,T., Ishikawa,H.,Nakagawa, N., Kuramitsu, S., andMasui, R. (2008)Insights into different dependence of dNTP triphosphohydrolase on metal ion species from intracellular ion concentrations in Thermus thermophilus. Extremophiles 12, 217-223.
-
(2008)
Extremophiles
, vol.12
, pp. 217-223
-
-
Kondo, N.1
Nishikubo, T.2
Wakamatsu, T.3
Ishikawa, H.4
Nakagawa, N.5
Kuramitsu, S.6
Masui, R.7
-
28
-
-
0035040209
-
Phosphorylation of uridine and cytidine nucleoside analogs by two human uridine-cytidine kinases
-
Van Rompay, A. R., Norda, A., Lindén, K., Johansson, M., and Karlsson, A. (2001)Phosphorylation of uridine and cytidine nucleoside analogs by two human uridine-cytidine kinases. Mol. Pharmacol. 59, 1181-1186. (Pubitemid 32381598)
-
(2001)
Molecular Pharmacology
, vol.59
, Issue.5
, pp. 1181-1186
-
-
Van Rompay, A.R.1
Norda, A.2
Linden, K.3
Johansson, M.4
Karlsson, A.5
-
29
-
-
50549159930
-
The kinetics of enzyme-catalyzed reactions with two or more substrates or products. I. Nomenclature and rate equations
-
Cleland, W. W. (1963)The kinetics of enzyme-catalyzed reactions with two or more substrates or products. I. Nomenclature and rate equations. Biochim. Biophys. Acta 67, 104-137.
-
(1963)
Biochim. Biophys. Acta
, vol.67
, pp. 104-137
-
-
Cleland, W.W.1
-
30
-
-
0016424267
-
Non allosteric regulation of the uridine kinase from seeds of Zea mays
-
Deng, Q., and Ives, D. H. (1975)Non allosteric regulation of the uridine kinase from seeds of Zea mays. Biochim. Biophys. Acta 377, 84-94.
-
(1975)
Biochim. Biophys. Acta
, vol.377
, pp. 84-94
-
-
Deng, Q.1
Ives, D.H.2
-
31
-
-
0016812652
-
Purification and properties of thymidine phosphorylase from Salmonella typhimurium
-
Blank, J. G., and Hoffee, P. A. (1975)Purification and properties of thymidine phosphorylase from Salmonella typhimurium. Arch. Biochem. Biophys. 168, 259-265.
-
(1975)
Arch. Biochem. Biophys.
, vol.168
, pp. 259-265
-
-
Blank, J.G.1
Hoffee, P.A.2
-
32
-
-
0019404119
-
Catabolism of thymidine in human blood platelets. Purification and properties of thymidine phosphorylase
-
Desgranges, C., Razaka, G., Raboud, M., and Bricaud, H. (1981)Catabolism of thymidine in human blood platelets. Purification and properties of thymidine phosphorylase. Biochim. Biophys. Acta 654, 211-218. (Pubitemid 11058078)
-
(1981)
Biochimica et Biophysica Acta
, vol.654
, Issue.2
, pp. 211-218
-
-
Desgranges, C.1
Razaka, G.2
Raboud, M.3
Bricaud, H.4
-
33
-
-
67650136762
-
Degradation of ppGpp by nudix pyrophosphatase modulates the transition of growth phase in the bacterium Thermus thermophilus
-
Ooga, T., Ohashi, Y., Kuramitsu, S., Koyama, Y., Tomita, M., Soga, T., and Masui, R. (2009)Degradation of ppGpp by nudix pyrophosphatase modulates the transition of growth phase in the bacterium Thermus thermophilus. J. Biol. Chem. 284, 15549-15556.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 15549-15556
-
-
Ooga, T.1
Ohashi, Y.2
Kuramitsu, S.3
Koyama, Y.4
Tomita, M.5
Soga, T.6
Masui, R.7
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