Reliability of nucleotide sequence information of full-length flagellin A gene (flaA) and flaA short variable region (SVR) for molecular discrimination of Campylobacter lari organisms

Folia Microbiologica

Volumn 56, Issue 2, 2011, Pages 103-109

  Hirayama, J ^a   Tazumi, A ^a   Nakanishi, S ^a   Tasaki, E ^a   Hayashi, K ^a   Moore, J E ^b,c   Ueno, H ^a   Millar, B C ^c   Kuribayashi, T ^a   Matsuda, M ^a  

^a AZABU UNIVERSITY   (Japan)

^b UNIVERSITY OF ULSTER   (United Kingdom)

^c BELFAST CITY HOSPITAL   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; FLAA PROTEIN, BACTERIA; FLAGELLIN;

ANIMAL; ARTICLE; CAMPYLOBACTER JEJUNI; CAMPYLOBACTER LARI; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETIC POLYMORPHISM; GENETICS; GENOTYPE; HUMAN; ISOLATION AND PURIFICATION; MOLECULAR GENETICS;

ANIMALS; CAMPYLOBACTER JEJUNI; CAMPYLOBACTER LARI; CLUSTER ANALYSIS; DNA, BACTERIAL; FLAGELLIN; GENOTYPE; HUMANS; MOLECULAR SEQUENCE DATA; POLYMORPHISM, GENETIC; SEQUENCE ANALYSIS, DNA;

CAMPYLOBACTER; CAMPYLOBACTER JEJUNI; CAMPYLOBACTER LARI;

EID: 79958103417     PISSN: 00155632     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12223-011-0026-0     Document Type: Article

References (21)

1. Benjamin J, Leaper S, Owen RJ, Skirrow MB (1983) Description of Campylobacter laridis, a new species comprising the nalidixic acid resistant thermophilic Campylobacter (NARTC) group. Curr Microbiol 8: 231-238.
2. Bolton FJ, Holt AV, Hutchinson DN (1985) Urease-positive thermophilic campylobacters. Lancet I: 1217-1218.
3. Debruyne L, On SW, De Brandt E, Vandamme P (2009) Novel Campylobacter lari-like bacteria from humans and molluscs: description of Campylobacter peloridis sp. nov., Campylobacter lari subsp. concheus subsp. nov. and Campylobacter lari subsp. lari subsp. nov. Int J Syst Evol Microbiol 59: 1126-1132.
4. Gondo T, Sekizuka T, Manaka N, Murayama O, Millar BC, Moore JE, Matsuda M (2006) Demonstration of the shorter flagellin (flaA) gene of urease-positive thermophilic Campylobacter isolated from the natural environment in Northern Ireland. Folia Microbiol 51: 183-190.
5. Lastovica AJ, Skirrow MB (2000) Clinical significance of Campylobacter and related species other than Campylobacter jejuni and C. coli. In: Nachamkin I, Blaser MJ (eds) Campylobacter. ASM Press, Washington, pp 89-120.
6. Lawson AJ, Logan JM, O'Neill GL, Desai M, Stanley J (1999) Large-scale survey of Campylobacter species in human gastroenteritis by PCR and PCR-enzyme-linked immunosorbent assay. J Clin Microbiol 37: 3860-3864.
7. Leatherbarrow AJH, Griffiths R, Hart CA, Kemp R, Williams NJ, Diggle PJ, Wright EJ, Sutherst J, Houghton P, French NP (2007) Campylobacter lari: genotype and antibiotic resistance of isolates from cattle, wildlife and water in an area of mixed dairy farmland in the United Kingdom. Environ Microbiol 9: 1772-1779.
8. Matsuda M, Moore JE (2004) Urease-positive thermophilic Campylobacter species. Appl Environ Microbiol 70: 4415-4418.
9. Matsuda M, Kaneko A, Stanley T, Millar BC, Miyajima M, Murphy PG, Moore JE (2003) Characterization of urease-positive thermophilic Campylobacter subspecies by multilocus enzyme electrophoresis typing. Appl Environ Microbiol 69: 3308-3310.
10. Meinersmann RJ, Helsel LO, Fields PI, Hiett KL (1997) Discrimination of Campylobacter jejuni isolates by fla gene sequencing. J Clin Microbiol 35: 2810-2814.
11. Meinersmann RJ, Phillips RW, Hiett KL, Fedorka-Cray P (2005) Differentiation of Campylobacter populations as demonstrated by flagellin short variable region sequences. Appl Environ Microbiol 71: 6368-6374.
12. Moore JE, Corcoran D, Dooley JSG, Fanning S, Lucey B, Matsuda M, McDowell DA, Megarud F, Millar BC, O'Mahony R, O'Riordan L, O'Rourke M, Rao JR, Rooney PJ, Sails A, Whyte P (2005) Campylobacter Vet Res 36: 351-382.
13. Nachamkin I, Bohachick K, Patton CM (1993) Flagellin gene typing of Campylobacter jejuni by restriction fragment length polymorphism analysis. J Clin Microbiol 31: 1531-1536.
14. Nuijten PJM, van Asten FJAM, Gasstra W, van der Zeijst BAM (1990) Structural and functional analysis of two Campylobacter jejuni flagellin genes. J Biol Chem 265: 17798-17804.
15. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic tree. Mol Biol Evol 4: 406-425.
16. Sekizuka T, Gondo T, Murayama O, Moore JE, Millar BC, Matsuda M (2002) flaA-like sequences containing internal termination codons (TAG) in urease-positive thermophilic Campylobacter isolated in Japan. Lett Appl Microbiol 35: 185-189.
17. Sekizuka T, Gondo T, Murayama O, Kato Y, Moore JE, Millar BC, Matsuda M (2004a) Molecular cloning, nucleotide sequencing and characterization of the flagellin gene from isolates of urease-positive thermophilic Campylobacter. Res Microbiol 155: 185-191.
18. Sekizuka T, Seki K, Hayakawa T, Moore JE, Murayama O, Matsuda M (2004b) Phenotypic characterisation of flagellin and flagella of urease-positive thermophilic campylobacters. Br J Biomed Sci 61: 186-189.
19. Sekizuka T, Yokoi T, Murayama O, Millar BC, Moore JE, Matsuda M (2005) A newly constructed primer pair for the PCR amplification, cloning and sequencing of the flagellin (flaA) gene from isolates of urease-negaive Campylobacter lari. Antonie Leeuwenhoek 88: 113-120.
20. Sekizuka T, Murayama O, Moore JE, Millar BC, Matsuda M (2007) Flagellin gene structure of flaA and flaB and adjacent gene loci in urease-positive thermophilic Campylobacter (UPTC). J Basic Microbiol 47: 63-73.
21. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl Acids Res 22: 4672-4680.