-
1
-
-
31344448066
-
Guidelines for the next 10 years of proteomics
-
M. R. Wilkins, R. D. Appel, J. E. Van Eyk, M. C. M. Chung, A. Görg, M. Hecker, L. A. Huber, H. Langen, A. J. Link, Y.-K. Paik, S. D. Patterson, S. R. Pennington, T. Rabilloud, R. J. Simpson, W. Weiss, M. J. Dunn,. Guidelines for the next 10 years of proteomics. Proteomics 2006, 6, 4.
-
(2006)
Proteomics
, vol.6
, pp. 4
-
-
Wilkins, M.R.1
Appel, R.D.2
Van Eyk, J.E.3
Chung, M.C.M.4
Görg, A.5
Hecker, M.6
Huber, L.A.7
Langen, H.8
Link, A.J.9
Paik, Y.-K.10
Patterson, S.D.11
Pennington, S.R.12
Rabilloud, T.13
Simpson, R.J.14
Weiss, W.15
Dunn, M.J.16
-
2
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
J. E. Elias, S. P. Gygi,. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat. Methods 2007, 4, 207.
-
(2007)
Nat. Methods
, vol.4
, pp. 207
-
-
Elias, J.E.1
Gygi, S.P.2
-
3
-
-
77649244055
-
Proteomics out of the archive: Two-dimensional electrophoresis and mass spectrometry using HOPE-fixed, paraffin-embedded tissues
-
D. Kähler, C. Alexander, H. Schultz, M. Abdullah, D. Branscheid, B. Lindner, P. Zabel, E. Vollmer, T. Goldmann,. Proteomics out of the archive: two-dimensional electrophoresis and mass spectrometry using HOPE-fixed, paraffin-embedded tissues. J. Histochem. Cytochem. 2010, 58, 221.
-
(2010)
J. Histochem. Cytochem.
, vol.58
, pp. 221
-
-
Kähler, D.1
Alexander, C.2
Schultz, H.3
Abdullah, M.4
Branscheid, D.5
Lindner, B.6
Zabel, P.7
Vollmer, E.8
Goldmann, T.9
-
4
-
-
33645661897
-
Optimizing search conditions for the mass fingerprint-based identification of proteins
-
E. Ossipova, D. Fenyö, J. Eriksson,. Optimizing search conditions for the mass fingerprint-based identification of proteins. Proteomics 2006, 6, 2079.
-
(2006)
Proteomics
, vol.6
, pp. 2079
-
-
Ossipova, E.1
Fenyö, D.2
Eriksson, J.3
-
5
-
-
38949128416
-
Evaluating peptide mass fingerprinting-based protein identification
-
S. Damodaran, T. D. Wood, P. Nagarajan, R. A. Rabin,. Evaluating peptide mass fingerprinting-based protein identification. Genom. Prot. Bioinform. 2007, 5, 152.
-
(2007)
Genom. Prot. Bioinform.
, vol.5
, pp. 152
-
-
Damodaran, S.1
Wood, T.D.2
Nagarajan, P.3
Rabin, R.A.4
-
6
-
-
34548202704
-
Proteomics of integral membrane proteinstheory and application
-
A. E. Speers, C. C. Wu,. Proteomics of integral membrane proteinstheory and application. Chem. Rev. 2007, 107, 3687.
-
(2007)
Chem. Rev.
, vol.107
, pp. 3687
-
-
Speers, A.E.1
Wu, C.C.2
-
7
-
-
0042386240
-
Protein identification: The origins of peptide mass fingerprinting
-
W. J. Henzel, C. Watanabe, J. T. Stults,. Protein identification: the origins of peptide mass fingerprinting. J. Am. Soc. Mass Spectrom. 2003, 14, 931.
-
(2003)
J. Am. Soc. Mass Spectrom.
, vol.14
, pp. 931
-
-
Henzel, W.J.1
Watanabe, C.2
Stults, J.T.3
-
8
-
-
13844281502
-
Peptide mass fingerprinting
-
B. Thiede, W. Höhenwarter, A. Krah, J. Mattow, M. Schmid, F. Schmidt, P. R. Jungblut,. Peptide mass fingerprinting. Methods 2005, 35, 237.
-
(2005)
Methods
, vol.35
, pp. 237
-
-
Thiede, B.1
Höhenwarter, W.2
Krah, A.3
Mattow, J.4
Schmid, M.5
Schmidt, F.6
Jungblut, P.R.7
-
9
-
-
0024289037
-
Laser desorption ionization of proteins with molecular masses exceeding 10 000 daltons
-
M. Karas, F. Hillenkamp,. Laser desorption ionization of proteins with molecular masses exceeding 10 000 daltons. Anal. Chem. 1988, 60, 2299.
-
(1988)
Anal. Chem.
, vol.60
, pp. 2299
-
-
Karas, M.1
Hillenkamp, F.2
-
10
-
-
0028028837
-
A method to increase contaminant tolerance in protein matrix-assisted laser desorption/ionization by the fabrication of thin protein-doped polycrystalline films
-
F. Xiang, R. C. Beavis, W. Ens,. A method to increase contaminant tolerance in protein matrix-assisted laser desorption/ionization by the fabrication of thin protein-doped polycrystalline films. Rapid Commun. Mass Spectrom. 1994, 8, 199.
-
(1994)
Rapid Commun. Mass Spectrom.
, vol.8
, pp. 199
-
-
Xiang, F.1
Beavis, R.C.2
Ens, W.3
-
11
-
-
15144343751
-
Matrix-assisted laser desorption/ionization mass spectrometry sample preparation techniques designed for various peptide and protein analytes
-
M. Kussmann, E. Nordhoff, H. Rahbek-Nielsen, S. Haebel, M. Rossel-Larsen, L. Jakobsen, J. Gobom, E. Mirgorodskaya, A. Kroll-Kristensen, L. Palm, P. Roepstorff,. Matrix-assisted laser desorption/ionization mass spectrometry sample preparation techniques designed for various peptide and protein analytes. J. Mass Spectrom. 1997, 32, 593.
-
(1997)
J. Mass Spectrom.
, vol.32
, pp. 593
-
-
Kussmann, M.1
Nordhoff, E.2
Rahbek-Nielsen, H.3
Haebel, S.4
Rossel-Larsen, M.5
Jakobsen, L.6
Gobom, J.7
Mirgorodskaya, E.8
Kroll-Kristensen, A.9
Palm, L.10
Roepstorff, P.11
-
12
-
-
0042386147
-
Combination of two matrices results in improved performance of maldi ms for peptide mass mapping and protein analysis
-
S. Laugesen, P. Roepstorff,. Combination of two matrices results in improved performance of maldi ms for peptide mass mapping and protein analysis. J. Am. Soc. Mass Spectrom. 2003, 14, 992.
-
(2003)
J. Am. Soc. Mass Spectrom.
, vol.14
, pp. 992
-
-
Laugesen, S.1
Roepstorff, P.2
-
13
-
-
0029979976
-
Influence of matrix solution conditions on the MALDI-MS analysis of peptides and proteins
-
S. L. Cohen, B. T. Chait,. Influence of matrix solution conditions on the MALDI-MS analysis of peptides and proteins. Anal. Chem. 1996, 68, 31.
-
(1996)
Anal. Chem.
, vol.68
, pp. 31
-
-
Cohen, S.L.1
Chait, B.T.2
-
14
-
-
47249106077
-
Matrix layer sample preparation: An improved MALDI-MS peptide analysis method for proteomic studies
-
I. Garaguso, J. Borlak,. Matrix layer sample preparation: An improved MALDI-MS peptide analysis method for proteomic studies. Proteomics 2008, 8, 2583.
-
(2008)
Proteomics
, vol.8
, pp. 2583
-
-
Garaguso, I.1
Borlak, J.2
-
15
-
-
53549111633
-
A simple and reliable protocol for mouse serum proteome profiling studies by use of two-dimensional electrophoresis and MALDI TOF/TOF mass spectrometry
-
M. Ritorto, J. Borlak,. A simple and reliable protocol for mouse serum proteome profiling studies by use of two-dimensional electrophoresis and MALDI TOF/TOF mass spectrometry. Proteome Science 2008, 6, 25.
-
(2008)
Proteome Science
, vol.6
, pp. 25
-
-
Ritorto, M.1
Borlak, J.2
-
16
-
-
3042561601
-
MALDI/MS peptide mass fingerprinting for proteome analysis: Identification of hydrophobic proteins attached to eucaryote keratinocyte cytoplasmic membrane using different matrices in concert
-
F. Gonnet, G. Lemaitre, G. Waksman, J. Tortajada,. MALDI/MS peptide mass fingerprinting for proteome analysis: identification of hydrophobic proteins attached to eucaryote keratinocyte cytoplasmic membrane using different matrices in concert. Proteome Sci. 2003, 1, 2.
-
(2003)
Proteome Sci.
, vol.1
, pp. 2
-
-
Gonnet, F.1
Lemaitre, G.2
Waksman, G.3
Tortajada, J.4
-
17
-
-
0033565832
-
Role of accurate mass measurement (±10 ppm) in protein identification strategies employing MS or MS/MS and database searching
-
K. R. Clauser, P. Baker, A. L. Burlingame,. Role of accurate mass measurement (±10 ppm) in protein identification strategies employing MS or MS/MS and database searching. Anal. Chem. 1999, 71, 2871.
-
(1999)
Anal. Chem.
, vol.71
, pp. 2871
-
-
Clauser, K.R.1
Baker, P.2
Burlingame, A.L.3
-
18
-
-
14744304574
-
Proteomics by FTICR mass spectrometry: Top down and bottom up
-
B. Bogdanov, R. D. Smith,. Proteomics by FTICR mass spectrometry: top down and bottom up. Mass Spectrom. Rev. 2005, 24, 168.
-
(2005)
Mass Spectrom. Rev.
, vol.24
, pp. 168
-
-
Bogdanov, B.1
Smith, R.D.2
-
19
-
-
0031623267
-
Fourier transform ion cyclotron resonance mass spectrometry: A primer
-
A. G. Marshall, C. L. Hendrickson, G. S. Jackson,. Fourier transform ion cyclotron resonance mass spectrometry: a primer. Mass Spectrom. Rev. 1998, 17, 1.
-
(1998)
Mass Spectrom. Rev.
, vol.17
, pp. 1
-
-
Marshall, A.G.1
Hendrickson, C.L.2
Jackson, G.S.3
-
20
-
-
0242670001
-
An automated matrix-assisted laser desorption/ionization quadrupole fourier transform ion cyclotron resonance mass spectrometer for "bottom-up" proteomics
-
A. Brock, D. M. Horn, E. C. Peters, C. M. Shaw, C. Ericson, Q. T. Phung, A. R. Salomon,. An automated matrix-assisted laser desorption/ionization quadrupole fourier transform ion cyclotron resonance mass spectrometer for "bottom-up" proteomics. Anal. Chem. 2003, 75, 3419.
-
(2003)
Anal. Chem.
, vol.75
, pp. 3419
-
-
Brock, A.1
Horn, D.M.2
Peters, E.C.3
Shaw, C.M.4
Ericson, C.5
Phung, Q.T.6
Salomon, A.R.7
-
21
-
-
0037108961
-
Accurate mass measurements for peptide and protein mixtures by using matrix-assisted laser desorption/ionization Fourier transform mass spectrometry
-
T. W. D. Chan, L. Duan, T. P. E. Sze,. Accurate mass measurements for peptide and protein mixtures by using matrix-assisted laser desorption/ ionization Fourier transform mass spectrometry. Anal. Chem. 2002, 74, 5282.
-
(2002)
Anal. Chem.
, vol.74
, pp. 5282
-
-
Chan, T.W.D.1
Duan, L.2
Sze, T.P.E.3
-
22
-
-
0033230052
-
Mass accuracy and sequence requirements for protein database searching
-
M. K. Green, M. V. Johnston, B. S. Larsen,. Mass accuracy and sequence requirements for protein database searching. Anal. Biochem. 1999, 275, 39.
-
(1999)
Anal. Biochem.
, vol.275
, pp. 39
-
-
Green, M.K.1
Johnston, M.V.2
Larsen, B.S.3
-
23
-
-
8444229270
-
Improved protein identification using automated high mass measurement accuracy MALDI FT-ICR MS peptide mass fingerprinting
-
D. M. Horn, E. C. Peters, H. Klock, A. Meyers, A. Brock,. Improved protein identification using automated high mass measurement accuracy MALDI FT-ICR MS peptide mass fingerprinting. Int. J. Mass Spectrom. 2004, 238, 189.
-
(2004)
Int. J. Mass Spectrom.
, vol.238
, pp. 189
-
-
Horn, D.M.1
Peters, E.C.2
Klock, H.3
Meyers, A.4
Brock, A.5
-
24
-
-
0038149492
-
Fourier transform ion cyclotron resonance mass spectrometry with nanoLC/microelectrospray ionization and matrix-assisted laser desorption/ionization: Analytical performance in peptide mass fingerprint analysis
-
M. Witt, J. Fuchser, G. Baykut,. Fourier transform ion cyclotron resonance mass spectrometry with nanoLC/microelectrospray ionization and matrix-assisted laser desorption/ionization: analytical performance in peptide mass fingerprint analysis. J. Am. Soc. Mass Spectrom. 2003, 14, 553.
-
(2003)
J. Am. Soc. Mass Spectrom.
, vol.14
, pp. 553
-
-
Witt, M.1
Fuchser, J.2
Baykut, G.3
-
25
-
-
26844511377
-
MALDI-TOF mass spectrometry analysis of cerebrospinal fluid tryptic peptide profiles to diagnose leptomeningeal metastases in patients with breast cancer
-
L. J. Dekker, W. Boogerd, G. Stockhammer, J. C. Dalebout, I. Siccama, P. Zheng, J. M. Bonfrer, J. J. Verschuuren, G. Jenster, M. M. Verbeek, T. M. Luider, P. A. S. Smitt,. MALDI-TOF mass spectrometry analysis of cerebrospinal fluid tryptic peptide profiles to diagnose leptomeningeal metastases in patients with breast cancer. Mol. Cell. Proteomics 2005, 4, 1341.
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 1341
-
-
Dekker, L.J.1
Boogerd, W.2
Stockhammer, G.3
Dalebout, J.C.4
Siccama, I.5
Zheng, P.6
Bonfrer, J.M.7
Verschuuren, J.J.8
Jenster, G.9
Verbeek, M.M.10
Luider, T.M.11
Smitt, P.A.S.12
-
26
-
-
33847114732
-
Identification of leptomeningeal metastasis-related proteins in cerebrospinal fluid of patients with breast cancer by a combination of MALDI-TOF, MALDI-FTICR and nanoLC-FTICR MS
-
A. Römpp, L. Dekker, I. Taban, G. Jenster, W. Boogerd, H. Bonfrer, B. Spengler, R. Heeren, P.S. Smitt, T.M. Luider,. Identification of leptomeningeal metastasis-related proteins in cerebrospinal fluid of patients with breast cancer by a combination of MALDI-TOF, MALDI-FTICR and nanoLC-FTICR MS. Proteomics 2007, 7, 474.
-
(2007)
Proteomics
, vol.7
, pp. 474
-
-
Römpp, A.1
Dekker, L.2
Taban, I.3
Jenster, G.4
Boogerd, W.5
Bonfrer, H.6
Spengler, B.7
Heeren, R.8
Smitt, P.S.9
Luider, T.M.10
-
27
-
-
51249106671
-
Improved peptide mass fingerprinting matches via optimized sample preparation in MALDI mass spectrometry
-
N. D. Padliya, T. D. Wood,. Improved peptide mass fingerprinting matches via optimized sample preparation in MALDI mass spectrometry. Anal. Chim. Acta 2008, 627, 162.
-
(2008)
Anal. Chim. Acta
, vol.627
, pp. 162
-
-
Padliya, N.D.1
Wood, T.D.2
-
28
-
-
0033105179
-
-
Two-layer sample preparation: a method for MALDI-MS analysis of complex peptide and protein mixtures.
-
Y. Dai, R. M. Whittal, L. Li,. Two-layer sample preparation: a method for MALDI-MS analysis of complex peptide and protein mixtures. Anal. Chem. 1999, 71, 1087.
-
(1999)
Anal. Chem.
, vol.71
, pp. 1087
-
-
Dai, Y.1
Whittal, R.M.2
Li, L.3
-
29
-
-
58149389516
-
An optimized MALDI mass spectrometry method for improved detection of lysine/arginine/histidine free peptides
-
M. Argentini, J.-M. Strub, C. Carapito, S. Sanglier, A. Van-Dorsselaer,. An optimized MALDI mass spectrometry method for improved detection of lysine/arginine/histidine free peptides. J. Proteome Res. 2008, 7, 5062.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 5062
-
-
Argentini, M.1
Strub, J.-M.2
Carapito, C.3
Sanglier, S.4
Van-Dorsselaer, A.5
-
30
-
-
0037445412
-
The initial-ion velocity as a marker for different desorption-ionization mechanisms in MALDI
-
M. Karas, U. Bahr, I. Fournier, M. Glückmann, A. Pfenninger,. The initial-ion velocity as a marker for different desorption-ionization mechanisms in MALDI. Int. J. Mass Spectrom. 2003, 226, 239.
-
(2003)
Int. J. Mass Spectrom.
, vol.226
, pp. 239
-
-
Karas, M.1
Bahr, U.2
Fournier, I.3
Glückmann, M.4
Pfenninger, A.5
-
31
-
-
0034815122
-
A high-pressure matrix-assisted laser desorption/ionization Fourier transform mass spectrometry ion source for thermal stabilization of labile biomolecules
-
P. B. O'Connor, C. E. Costello,. A high-pressure matrix-assisted laser desorption/ionization Fourier transform mass spectrometry ion source for thermal stabilization of labile biomolecules. Rapid Commun. Mass Spectrom. 2001, 15, 1862.
-
(2001)
Rapid Commun. Mass Spectrom.
, vol.15
, pp. 1862
-
-
O'Connor, P.B.1
Costello, C.E.2
-
32
-
-
4344712157
-
Laser pulse length dependence of internal energy transfer in UV-MALDI-MS
-
A. Vertes, G. Luo, L. Ye, Y. Chen, I. Marginean,. Laser pulse length dependence of internal energy transfer in UV-MALDI-MS. Appl. Phys. A: Mater. Sci. Process. 2004, 79, 823.
-
(2004)
Appl. Phys. A: Mater. Sci. Process.
, vol.79
, pp. 823
-
-
Vertes, A.1
Luo, G.2
Ye, L.3
Chen, Y.4
Marginean, I.5
|