메뉴 건너뛰기




Volumn 409, Issue 2, 2011, Pages 333-337

Connected cavity structure enables prenyl elongation across the dimer interface in mutated geranylfarnesyl diphosphate synthase from Methanosarcina mazei

Author keywords

Archaea; Geranylfarnesyl diphosphate synthase; Homology modeling; Isoprenoid; Mutagenesis; Prenyltransferase

Indexed keywords

DIMER; DIMETHYLALLYLTRANSFERASE; GERANYLFARNESYL DIPHOSPHATE SYNTHASE; ISOLEUCINE; UNCLASSIFIED DRUG;

EID: 79957897289     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2011.05.018     Document Type: Article
Times cited : (5)

References (28)
  • 1
    • 11544324496 scopus 로고    scopus 로고
    • Enzymatic aspects of isoprenoid chain elongation
    • Ogura K., Koyama T. Enzymatic aspects of isoprenoid chain elongation. Chem. Rev. 1998, 98:1263-1276.
    • (1998) Chem. Rev. , vol.98 , pp. 1263-1276
    • Ogura, K.1    Koyama, T.2
  • 2
    • 0031046036 scopus 로고    scopus 로고
    • Two cistrons of the gerC operon of Bacillus subtilis encode the two subunits of heptaprenyl diphosphate synthase
    • Zhang Y.W., Koyama T., Ogura K. Two cistrons of the gerC operon of Bacillus subtilis encode the two subunits of heptaprenyl diphosphate synthase. J. Bacteriol. 1997, 179:1417-1419.
    • (1997) J. Bacteriol. , vol.179 , pp. 1417-1419
    • Zhang, Y.W.1    Koyama, T.2    Ogura, K.3
  • 3
    • 0031916619 scopus 로고    scopus 로고
    • Molecular cloning, expression, and characterization of the genes encoding the two essential protein components of Micrococcus luteus B-P 26 hexaprenyl diphosphate synthase
    • Shimizu N., Koyama T., Ogura K. Molecular cloning, expression, and characterization of the genes encoding the two essential protein components of Micrococcus luteus B-P 26 hexaprenyl diphosphate synthase. J. Bacteriol. 1998, 180:1578-1581.
    • (1998) J. Bacteriol. , vol.180 , pp. 1578-1581
    • Shimizu, N.1    Koyama, T.2    Ogura, K.3
  • 4
    • 0142025150 scopus 로고    scopus 로고
    • Fission yeast decaprenyl diphosphate synthase consists of Dps1 and the newly characterized Dlp1 protein in a novel heterotetrameric structure
    • Saiki R., Nagata A., Uchida N., Kainou T., Matsuda H., Kawamukai M. Fission yeast decaprenyl diphosphate synthase consists of Dps1 and the newly characterized Dlp1 protein in a novel heterotetrameric structure. Eur. J. Biochem. 2003, 270:4113-4121.
    • (2003) Eur. J. Biochem. , vol.270 , pp. 4113-4121
    • Saiki, R.1    Nagata, A.2    Uchida, N.3    Kainou, T.4    Matsuda, H.5    Kawamukai, M.6
  • 5
    • 33746836518 scopus 로고    scopus 로고
    • The crystal structure of human geranylgeranyl pyrophosphate synthase reveals a novel hexameric arrangement and inhibitory product binding
    • Kavanagh K.L., Dunford J.E., Bunkoczi G., Russell R.G., Oppermann U. The crystal structure of human geranylgeranyl pyrophosphate synthase reveals a novel hexameric arrangement and inhibitory product binding. J. Biol. Chem. 2006, 281:22004-22012.
    • (2006) J. Biol. Chem. , vol.281 , pp. 22004-22012
    • Kavanagh, K.L.1    Dunford, J.E.2    Bunkoczi, G.3    Russell, R.G.4    Oppermann, U.5
  • 6
    • 77950362771 scopus 로고    scopus 로고
    • Structure of a heterotetrameric geranyl pyrophosphate synthase from mint (Mentha piperita) reveals intersubunit regulation
    • Chang T.H., Hsieh F.L., Ko T.P., Teng K.H., Liang P.H., Wang A.H.J. Structure of a heterotetrameric geranyl pyrophosphate synthase from mint (Mentha piperita) reveals intersubunit regulation. Plant Cell 2010, 22:454-467.
    • (2010) Plant Cell , vol.22 , pp. 454-467
    • Chang, T.H.1    Hsieh, F.L.2    Ko, T.P.3    Teng, K.H.4    Liang, P.H.5    Wang, A.H.J.6
  • 7
    • 0028145239 scopus 로고
    • Crystal structure of recombinant farnesyl diphosphate synthase at 2.6-A resolution
    • Tarshis L.C., Yan M., Poulter C.D., Sacchettini J.C. Crystal structure of recombinant farnesyl diphosphate synthase at 2.6-A resolution. Biochemistry 1994, 33:10871-10877.
    • (1994) Biochemistry , vol.33 , pp. 10871-10877
    • Tarshis, L.C.1    Yan, M.2    Poulter, C.D.3    Sacchettini, J.C.4
  • 8
    • 0029804201 scopus 로고    scopus 로고
    • A role of the amino acid residue located on the fifth position before the first aspartate-rich motif of farnesyl diphosphate synthase on determination of the final product
    • Ohnuma S., Narita K., Nakazawa T., Ishida C., Takeuchi Y., Ohto C., Nishino T. A role of the amino acid residue located on the fifth position before the first aspartate-rich motif of farnesyl diphosphate synthase on determination of the final product. J. Biol. Chem. 1996, 271:30748-30754.
    • (1996) J. Biol. Chem. , vol.271 , pp. 30748-30754
    • Ohnuma, S.1    Narita, K.2    Nakazawa, T.3    Ishida, C.4    Takeuchi, Y.5    Ohto, C.6    Nishino, T.7
  • 9
    • 0029880618 scopus 로고    scopus 로고
    • Conversion from farnesyl diphosphate synthase to geranylgeranyl diphosphate synthase by random chemical mutagenesis
    • Ohnuma S.I., Nakazawa T., Hemmi H., Hallberg A.M., Koyama T., Ogura K., Nishino T. Conversion from farnesyl diphosphate synthase to geranylgeranyl diphosphate synthase by random chemical mutagenesis. J. Biol. Chem. 1996, 271:10087-10095.
    • (1996) J. Biol. Chem. , vol.271 , pp. 10087-10095
    • Ohnuma, S.I.1    Nakazawa, T.2    Hemmi, H.3    Hallberg, A.M.4    Koyama, T.5    Ogura, K.6    Nishino, T.7
  • 10
    • 0029785708 scopus 로고    scopus 로고
    • Conversion of product specificity of archaebacterial geranylgeranyl-diphosphate synthase. Identification of essential amino acid residues for chain length determination of prenyltransferase reaction
    • Ohnuma S., Hirooka K., Hemmi H., Ishida C., Ohto C., Nishino T. Conversion of product specificity of archaebacterial geranylgeranyl-diphosphate synthase. Identification of essential amino acid residues for chain length determination of prenyltransferase reaction. J. Biol. Chem. 1996, 271:18831-18837.
    • (1996) J. Biol. Chem. , vol.271 , pp. 18831-18837
    • Ohnuma, S.1    Hirooka, K.2    Hemmi, H.3    Ishida, C.4    Ohto, C.5    Nishino, T.6
  • 12
    • 0034680340 scopus 로고    scopus 로고
    • Chain length determination of prenyltransferases: both heteromeric subunits of medium-chain (E)-prenyl diphosphate synthase are involved in the product chain length determination
    • Zhang Y.W., Li X.Y., Koyama T. Chain length determination of prenyltransferases: both heteromeric subunits of medium-chain (E)-prenyl diphosphate synthase are involved in the product chain length determination. Biochemistry 2000, 39:12717-12722.
    • (2000) Biochemistry , vol.39 , pp. 12717-12722
    • Zhang, Y.W.1    Li, X.Y.2    Koyama, T.3
  • 14
    • 61349196343 scopus 로고    scopus 로고
    • Effect of mutagenesis at the region upstream from the G(Q/E) motif of three types of geranylgeranyl diphosphate synthase on product chain-length
    • Noike M., Katagiri T., Nakayama T., Nishino T., Hemmi H. Effect of mutagenesis at the region upstream from the G(Q/E) motif of three types of geranylgeranyl diphosphate synthase on product chain-length. J. Biosci. Bioeng. 2009, 107:235-239.
    • (2009) J. Biosci. Bioeng. , vol.107 , pp. 235-239
    • Noike, M.1    Katagiri, T.2    Nakayama, T.3    Nishino, T.4    Hemmi, H.5
  • 15
    • 0038531133 scopus 로고    scopus 로고
    • An alternative mechanism of product chain-length determination in type III geranylgeranyl diphosphate synthase
    • Hemmi H., Noike M., Nakayama T., Nishino T. An alternative mechanism of product chain-length determination in type III geranylgeranyl diphosphate synthase. Eur. J. Biochem. 2003, 270:2186-2194.
    • (2003) Eur. J. Biochem. , vol.270 , pp. 2186-2194
    • Hemmi, H.1    Noike, M.2    Nakayama, T.3    Nishino, T.4
  • 16
    • 33744950176 scopus 로고    scopus 로고
    • Crystal structure of type-III geranylgeranyl pyrophosphate synthase from Saccharomyces cerevisiae and the mechanism of product chain length determination
    • Chang T.H., Guo R.T., Ko T.P., Wang A.H.J., Liang P.H. Crystal structure of type-III geranylgeranyl pyrophosphate synthase from Saccharomyces cerevisiae and the mechanism of product chain length determination. J. Biol. Chem. 2006, 281:14991-15000.
    • (2006) J. Biol. Chem. , vol.281 , pp. 14991-15000
    • Chang, T.H.1    Guo, R.T.2    Ko, T.P.3    Wang, A.H.J.4    Liang, P.H.5
  • 17
    • 13844297445 scopus 로고    scopus 로고
    • Directed evolution of Escherichia coli farnesyl diphosphate synthase (IspA) reveals novel structural determinants of chain length specificity
    • Lee P.C., Petri R., Mijts B.N., Watts K.T., Schmidt-Dannert C. Directed evolution of Escherichia coli farnesyl diphosphate synthase (IspA) reveals novel structural determinants of chain length specificity. Metab. Eng. 2005, 7:18-26.
    • (2005) Metab. Eng. , vol.7 , pp. 18-26
    • Lee, P.C.1    Petri, R.2    Mijts, B.N.3    Watts, K.T.4    Schmidt-Dannert, C.5
  • 18
    • 2942709821 scopus 로고    scopus 로고
    • A molecular ruler for chain elongation catalyzed by octaprenyl pyrophosphate synthase and its structure-based engineering to produce unprecedented long chain trans-prenyl products
    • Guo R.T., Kuo C.J., Ko T.P., Chou C.C., Liang P.H., Wang A.H.J. A molecular ruler for chain elongation catalyzed by octaprenyl pyrophosphate synthase and its structure-based engineering to produce unprecedented long chain trans-prenyl products. Biochemistry 2004, 43:7678-7686.
    • (2004) Biochemistry , vol.43 , pp. 7678-7686
    • Guo, R.T.1    Kuo, C.J.2    Ko, T.P.3    Chou, C.C.4    Liang, P.H.5    Wang, A.H.J.6
  • 19
    • 47249088353 scopus 로고    scopus 로고
    • The product chain length determination mechanism of type II geranylgeranyl diphosphate synthase requires subunit interaction
    • Noike M., Katagiri T., Nakayama T., Koyama T., Nishino T., Hemmi H. The product chain length determination mechanism of type II geranylgeranyl diphosphate synthase requires subunit interaction. FEBS J. 2008, 275:3921-3933.
    • (2008) FEBS J. , vol.275 , pp. 3921-3933
    • Noike, M.1    Katagiri, T.2    Nakayama, T.3    Koyama, T.4    Nishino, T.5    Hemmi, H.6
  • 20
    • 79952797864 scopus 로고    scopus 로고
    • Crystal structure of heterodimeric hexaprenyl diphosphate synthase from Micrococcus luteus B-P 26 reveals that the small subunit is directly involved in the product chain-length regulation
    • Sasaki D., Fujihashi M., Okuyama N., Kobayashi Y., Noike M., Koyama T., Miki K. Crystal structure of heterodimeric hexaprenyl diphosphate synthase from Micrococcus luteus B-P 26 reveals that the small subunit is directly involved in the product chain-length regulation. J. Biol. Chem. 2010, 3729-3740.
    • (2010) J. Biol. Chem. , pp. 3729-3740
    • Sasaki, D.1    Fujihashi, M.2    Okuyama, N.3    Kobayashi, Y.4    Noike, M.5    Koyama, T.6    Miki, K.7
  • 21
    • 77249158769 scopus 로고    scopus 로고
    • Geranylfarnesyl diphosphate synthase from Methanosarcina mazei: different role, different evolution
    • Ogawa T., Yoshimura T., Hemmi H. Geranylfarnesyl diphosphate synthase from Methanosarcina mazei: different role, different evolution. Biochem. Biophys. Res. Commun. 2010, 393:16-20.
    • (2010) Biochem. Biophys. Res. Commun. , vol.393 , pp. 16-20
    • Ogawa, T.1    Yoshimura, T.2    Hemmi, H.3
  • 22
    • 0031921345 scopus 로고    scopus 로고
    • Isolation and characterization of methanophenazine and function of phenazines in membrane-bound electron transport of Methanosarcina mazei Gö1
    • Abken H.J., Tietze M., Brodersen J., Bäumer S., Beifuss U., Deppenmeier U. Isolation and characterization of methanophenazine and function of phenazines in membrane-bound electron transport of Methanosarcina mazei Gö1. J. Bacteriol. 1998, 180:2027-2032.
    • (1998) J. Bacteriol. , vol.180 , pp. 2027-2032
    • Abken, H.J.1    Tietze, M.2    Brodersen, J.3    Bäumer, S.4    Beifuss, U.5    Deppenmeier, U.6
  • 23
    • 0004136246 scopus 로고
    • Molecular Cloning, a Laboratory Manual, second ed., Cold Spring Harbor Laboratory Press
    • Cold Spring Harbor, NY.
    • J. Sambrook, E.F. Fritsch, T. Maniatis, Molecular Cloning, a Laboratory Manual, second ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1989.
    • (1989)
    • Sambrook, J.1    Fritsch, E.F.2    Maniatis, T.3
  • 24
    • 0020482354 scopus 로고
    • Efficient enzymatic hydrolysis of polyprenyl pyrophosphates
    • Fujii H., Koyama T., Ogura K. Efficient enzymatic hydrolysis of polyprenyl pyrophosphates. Biochim. Biophys. Acta 1982, 712:716-718.
    • (1982) Biochim. Biophys. Acta , vol.712 , pp. 716-718
    • Fujii, H.1    Koyama, T.2    Ogura, K.3
  • 25
    • 0032500606 scopus 로고    scopus 로고
    • A pathway where polyprenyl diphosphate elongates in prenyltransferase - insight into a common mechanism of chain length determination of prenyltransferases
    • Ohnuma S., Hirooka K., Tsuruoka N., Yano M., Ohto C., Nakane H., Nishino T. A pathway where polyprenyl diphosphate elongates in prenyltransferase - insight into a common mechanism of chain length determination of prenyltransferases. J. Biol. Chem. 1998, 273:26705-26713.
    • (1998) J. Biol. Chem. , vol.273 , pp. 26705-26713
    • Ohnuma, S.1    Hirooka, K.2    Tsuruoka, N.3    Yano, M.4    Ohto, C.5    Nakane, H.6    Nishino, T.7
  • 26
    • 0027136282 scopus 로고
    • Comparative protein modelling by satisfaction of spatial restraints
    • Sali A., Blundell T.L. Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol. 1993, 234:779-815.
    • (1993) J. Mol. Biol. , vol.234 , pp. 779-815
    • Sali, A.1    Blundell, T.L.2
  • 27
    • 33845917081 scopus 로고    scopus 로고
    • Structure and reaction geometry of geranylgeranyl diphosphate synthase from Sinapis alba
    • Kloer D.P., Welsch R., Beyer P., Schulz G.E. Structure and reaction geometry of geranylgeranyl diphosphate synthase from Sinapis alba. Biochemistry 2006, 45:15197-15204.
    • (2006) Biochemistry , vol.45 , pp. 15197-15204
    • Kloer, D.P.1    Welsch, R.2    Beyer, P.3    Schulz, G.E.4
  • 28
    • 1042301374 scopus 로고    scopus 로고
    • Crystal structure of octaprenyl pyrophosphate synthase from hyperthermophilic Thermotoga maritima and mechanism of product chain length determination
    • Guo R.T., Kuo C.J., Chou C.C., Ko T.P., Shr H.L., Liang P.H., Wang A.H.J. Crystal structure of octaprenyl pyrophosphate synthase from hyperthermophilic Thermotoga maritima and mechanism of product chain length determination. J. Biol. Chem. 2004, 279:4903-4912.
    • (2004) J. Biol. Chem. , vol.279 , pp. 4903-4912
    • Guo, R.T.1    Kuo, C.J.2    Chou, C.C.3    Ko, T.P.4    Shr, H.L.5    Liang, P.H.6    Wang, A.H.J.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.